TCONS_00070964 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070964
Unique NameTCONS_00070964
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070964 ID=TCONS_00070964|Name=TCONS_00070964|organism=Clytia hemisphaerica|type=transcript|length=488bp
GAAGAAGCAAGCAAGTTGGTGACTTAACTCAGAGTAAATAATTTTGCTGC
TTGGGAGCATCAATTCAAAATGATGAGAGGATTTTTATTGATCCTGTTCC
TTGTGAGTTTGCAGCAGATATCCATCTTTGCGATCGGTGGTGATTGTTGG
CAAGGTGTGAGTTGTGGAACATGCGGCGGTTGGCAAGGCAGTATCAACGG
TGTTCCCGTGTGCTGTGCCTACTGCGAAAAGAGTGGAATGGCTTTAAGAT
CAACTTCTTGTAATTGCTTGCACAATGGTGATGACAAGCCAGAAATAAGT
GGTAACTCAACGATCATTGAAAATGAACAGCTGAAACTTAAATGTACTTC
CATTTGGGGTCGGTCGTTTACTTCATATAAATGGTTCCGCAATGGAATGG
TTATCAATGGTGCAACAAATGAAATATATCAAACAATCAACTTCGAAAGA
GACGGAGCTAGCAATTATTCTTGCCAGGTTTCAAATGG
Run BLAST on NCBI

protein sequence of TCONS_00070964-protein

>TCONS_00070964-protein ID=TCONS_00070964-protein|Name=TCONS_00070964-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MMRGFLLILFLVSLQQISIFAIGGDCWQGVSCGTCGGWQGSINGVPVCCA
YCEKSGMALRSTSCNCLHNGDDKPEISGNSTIIENEQLKLKCTSIWGRSF
TSYKWFRNGMVINGATNEIYQTINFERDGASNYSCQVSN
Run BLAST on NCBI

transcript from alignment at scaffold_58:530570..532735-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070964 ID=TCONS_00070964|Name=TCONS_00070964|organism=Clytia hemisphaerica|type=transcript|length=2166bp|location=Sequence derived from alignment at scaffold_58:530570..532735- (Clytia hemisphaerica)
GAAGAAGCAAGCAAGTTGGTGACTTAACTCAGAGTAAATAATTTTGCTGC
TTGGGAGCATCAATTCAAAATGATGAGAGGATTTTTATTGATCCTGTTCC
TTGTGAGTTTGCAGCAGATATCCATCTTTGGTAAGTAAGTTAGCCGACAA
ACCTGGCGATGAAAACCCGTTTGTTTTTTTAGCGTAATGACTTCACGTCA
AACGAAAACGAAAGTCTATAAAACTTCATCGAGATTGTTAAAAGTGCGAC
TCGAAATTCCATTTTATGAGCGTGGAAAAGACTTACTTAATGACTATATC
TTATTTTACAATTGACACCATGTTAGCCCAGAAAAAAGTATATCCTAGAC
TAAATATATTTCAATTTATCTGCACTTTTGAATTCTTGCACTTGTTAATT
TCGCATAGCGAAAGTATTACGATAGGCTTTCGCGGCGGTGGTCGGTGAGG
AATAAAGTTTAGAAAACGAAAGTAGTTGAAACTTCTAGAATATTCTCGAA
GGTTTAAAATATGGACTCACTTGCTAAGATAAAATCTAGCGTTTTGTTCC
ATCATTCCAGTGCACAAGTGCTAAGTAGGCGTAACCAAGGATTGGTAAAC
ATTGCTCGTTTTTTTTAATGACAGATTTCAGCATGCTGTCAGACTTGCTT
TGGTTGTTTGTATTTTTATCATGTTTTTGGTGTTTTAAGAGTATTAAAGA
GGTTAATATTTCTTTTAGCATATACTATTTTATGTTTGTATAGTTAGTAA
ACGAGTCTGCTAAATCGCGTGCCACGCGTGCCAGCGTGCTTTGGTGTGCC
AACGTGCCAGCGTGCCATCCAAATTTTGCGTACCATCCAAGTTTCGGCGT
GCCATCCGAATTTCGGCGTTTTCTTCAAGGGGTACATAGCAGGGATTCGA
ACCTAGGATCCATGGTTGGAGGTGTTAGTGTGAAGATGAGTCCTTAAAAA
GGAGGACCTCTTGCTCATTGTATTTCCCCTTATAATTATCTCATTATTAA
TTAGCGATCGGTGGTGATTGTTGGCAAGGTGTGAGTTGTGGAACATGCGG
CGGTTGGCAAGGCAGTATCAACGGTGTTCCCGTGTGCTGTGCCTACTGCG
AAAAGAGTGGAATGGCTTTAAGATCAACTTCTTGTAATTGCTTGCACAAT
GGTAGGTTTTGTAACCACGTGACCATTTTTTTTGTGAATTACGTGAATTC
TTTATGTTTACATTCCAATTAGGCTGCACGCATCCCCTCAAATATGGGTT
GATTTAGCAGATGCGTATTGTTTATAAAATCCGAGACTCCCCCTTCGTTG
TGTGTTTTAGCAACTTGATTAGCTTGATTGGGCTCTTCCAGAAAAAAACC
ATTCATGGGGGGTGGAGGATATATTGTCCAGGGGTATTGAAAAAAACCTG
AAAAACTGCCATGTCCATGGGGTGAATCAGCGATGTCCAGGGGTAAATAT
TTGTGTCCAAGGGGTCAATTTGATGCTTGTCCAGAGGTAACTGCCATGTC
CAGGGGGTGAAAAATCGAAATGTCCAGGGGTAGATCAAAGAAAAAATAAT
ATATCCTCCACCCCCCATGAACGAATTTTTTCTGGAAGAGCCCATTATGA
AGTTAATAGATTTTTAAATTTCATTAAAGATTTAGAGATAGCCAGAGGTT
AATACAATCATTACTTAGTTAGATTTTTAAACTTTTTTAAAGAAAATTGA
AACAGGTTGCCCCAAATTTTGGGTAATTTTTGGACGGGGATTCTATATAC
GATTTAGCATCCCCTATATCAAAACATATCAGAGGGGATGCGTGTGGCCT
ACATTCTACTTTAAGAGACCAATGTTTTGTTTCGGAGCATTTTTAACGTA
ATCTGTACCAGGGTGTACCTCAACGTTTATCGTCCTCGAGTGCTACAAAT
TCTTTTGTTGTTTCTGTTTTGTTTGCAATCAAACGAAGCGCTGTTTTTAT
CTCAGGTGATGACAAGCCAGAAATAAGTGGTAACTCAACGATCATTGAAA
ATGAACAGCTGAAACTTAAATGTACTTCCATTTGGGGTCGGTCGTTTACT
TCATATAAATGGTTCCGCAATGGAATGGTTATCAATGGTGCAACAAATGA
AATATATCAAACAATCAACTTCGAAAGAGACGGAGCTAGCAATTATTCTT
GCCAGGTTTCAAATGG

Coding sequence (CDS) from alignment at scaffold_58:530570..532735-

>TCONS_00070964 ID=TCONS_00070964|Name=TCONS_00070964|organism=Clytia hemisphaerica|type=CDS|length=1251bp|location=Sequence derived from alignment at scaffold_58:530570..532735- (Clytia hemisphaerica)
GTGATGACAAGCCAGAAATAAGTGGTAACTCAACGATCATTGAAAATGAA
CAGCTGAAACTTAAATGTACTTCCATTTGGGGTCGGTCGTTTACTTCATA
TAAATGGTTCCGCAATGGAATGGTTATCAATGGTGCAACAAATGAAATAT
ATCAAACAATCAACTTCGAAAGAGACGGAGCTAGCAATTATTCTTGCCAG
GTTTCAAATCGATCGGTGGTGATTGTTGGCAAGGTGTGAGTTGTGGAACA
TGCGGCGGTTGGCAAGGCAGTATCAACGGTGTTCCCGTGTGCTGTGCCTA
CTGCGAAAAGAGTGGAATGGCTTTAAGATCAACTTCTTGTAATTGCTTGC
ACAATGATGATGAGAGGATTTTTATTGATCCTGTTCCTTGTGAGTTTGCA
GCAGATATCCATCTTTGGTGATGACAAGCCAGAAATAAGTGGTAACTCAA
CGATCATTGAAAATGAACAGCTGAAACTTAAATGTACTTCCATTTGGGGT
CGGTCGTTTACTTCATATAAATGGTTCCGCAATGGAATGGTTATCAATGG
TGCAACAAATGAAATATATCAAACAATCAACTTCGAAAGAGACGGAGCTA
GCAATTATTCTTGCCAGGTTTCAAATCGATCGGTGGTGATTGTTGGCAAG
GTGTGAGTTGTGGAACATGCGGCGGTTGGCAAGGCAGTATCAACGGTGTT
CCCGTGTGCTGTGCCTACTGCGAAAAGAGTGGAATGGCTTTAAGATCAAC
TTCTTGTAATTGCTTGCACAATGATGATGAGAGGATTTTTATTGATCCTG
TTCCTTGTGAGTTTGCAGCAGATATCCATCTTTGGTGATGACAAGCCAGA
AATAAGTGGTAACTCAACGATCATTGAAAATGAACAGCTGAAACTTAAAT
GTACTTCCATTTGGGGTCGGTCGTTTACTTCATATAAATGGTTCCGCAAT
GGAATGGTTATCAATGGTGCAACAAATGAAATATATCAAACAATCAACTT
CGAAAGAGACGGAGCTAGCAATTATTCTTGCCAGGTTTCAAATCGATCGG
TGGTGATTGTTGGCAAGGTGTGAGTTGTGGAACATGCGGCGGTTGGCAAG
GCAGTATCAACGGTGTTCCCGTGTGCTGTGCCTACTGCGAAAAGAGTGGA
ATGGCTTTAAGATCAACTTCTTGTAATTGCTTGCACAATGATGATGAGAG
GATTTTTATTGATCCTGTTCCTTGTGAGTTTGCAGCAGATATCCATCTTT
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044105XLOC_044105Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070964-proteinTCONS_00070964-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070964-exon-scaffold_58-1575043694:532606..532735TCONS_00070964-exon-scaffold_58-1575043694:532606..532735Clytia hemisphaericaexon
TCONS_00070964-exon-scaffold_58-1575043694:531585..531731TCONS_00070964-exon-scaffold_58-1575043694:531585..531731Clytia hemisphaericaexon
TCONS_00070964-exon-scaffold_58-1575043694:530570..530780TCONS_00070964-exon-scaffold_58-1575043694:530570..530780Clytia hemisphaericaexon
TCONS_00070964-exon-scaffold_58-1510915933:532606..532735TCONS_00070964-exon-scaffold_58-1510915933:532606..532735Clytia hemisphaericaexon
TCONS_00070964-exon-scaffold_58-1510915933:531585..531731TCONS_00070964-exon-scaffold_58-1510915933:531585..531731Clytia hemisphaericaexon
TCONS_00070964-exon-scaffold_58-1510915933:530570..530780TCONS_00070964-exon-scaffold_58-1510915933:530570..530780Clytia hemisphaericaexon
TCONS_00070964-exon-scaffold_58-1491911889:532606..532735TCONS_00070964-exon-scaffold_58-1491911889:532606..532735Clytia hemisphaericaexon
TCONS_00070964-exon-scaffold_58-1491911889:531585..531731TCONS_00070964-exon-scaffold_58-1491911889:531585..531731Clytia hemisphaericaexon
TCONS_00070964-exon-scaffold_58-1491911889:530570..530780TCONS_00070964-exon-scaffold_58-1491911889:530570..530780Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:530570..532735 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.406524	0.608168	0	0.664032	1.34286	0	0.157521	4.91691	5.6538	0	0	0.0954588	0.489211	10.9745	14.0349	0	0.179906	0.1458	0	0.316368	0.127014	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007110Ig-like_dom
IPR013783Ig-like_fold
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070964 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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