TCONS_00070959 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070959
Unique NameTCONS_00070959
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2572

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070959 ID=TCONS_00070959|Name=TCONS_00070959|organism=Clytia hemisphaerica|type=transcript|length=2572bp
CGACGACAACAACTTTTTCACCGCCGAAAACAACTTTTCCACCGACAACA
ACTTTTCCACCGACGACAACTTCTCCACCGACGACAACTTCTCCACCTAC
GACAACAACTTTTCCACAACCACAACCGACAACCACTCCACCGACGACAA
CCACAGCAACAACTGAACCAGATGGCTATTACTTTTGGAGTGGATGGACA
GCGTGGGGTTCTTGCAATGGACATTTAAAGACGAGATACCGATAttgctt
tcactttcactttagCTCCTCTCAAACAACCCTAGCACCTTCGCAAGCAC
CGTTTGAAAACTGCCCAGgctttttttatgaatattctAGCCATGGATGT
ACAACAACCACTCCATCGACGACAACAACTTTTCCACCGACGACAACAAC
TTTTCCACCGACGACAACAACTTTTCCACCGACGACAACAACTTTCCCAC
CGACGACAACAACTACTGCCGCTCCACCAACAACTACCGCCTATCCACCA
ACAACTACTGCCGCTCCAACAACAACTACCGCCTATCCACAAACAACTAC
TGTCTATCCACAAACAACTACTGCCTATCCAACAACAAGTACTGCCTATC
CACAAACAACTACTGCCGCTCCAACAACAACTACTGCCTATCCACAAACA
ACTACTGCCTATCCACCAACAACTACCGCCTATCCACCAACAACTACTGC
CTATCCACAAACAACTACTGCCTATCCACAAACAACTACTGCCTATCCAC
AAACAACTACTGCCTATCCAACAACAAGTACTGCCTATCCACAAACAACT
ACTGCCGCTCCAACAACAACTACTGCCTATCCACAAACAACTACTGCCTA
TCCACAAACAACTACTGCCTATCCACCAACAACTACCGCCTATCCACCAA
CAACTACTGCCTATCCACCAACAACTACTGCCTATCCACAAACAACTACT
GCCGCTCCACCAACAACTACTGCCTATCCACCAACAACTACTGCCTATCC
ACAAACAACTACTGCCTATCCACCAACAACTACCGCCTATCCACCAACAA
CTACTGCCTATCCACCAACAACTACTGCCTATCCACAAACAACTACTGCC
GCTCCACCAACAACTACTGCCTATCCACCAACAACTACTGCCTATCCACA
AACAACTACTGCCTATCCACCAACAACTACCGCCTATCCACCAACAACTA
CTGCCGCTCCAACAACAACAGTTGCACCTCCAGATGTAGTAGATTTACAA
TGCAATCCAGATGGATTTAAAGCTGGATTCCTTTTGACCAACTTCGAAGA
CAGTTATTACAATGTCACAAAAATCCACTTCGGTGATAGTTCATGTATTA
CAAACGACATCAACGGAAACATTAATATTCAACGACAGACCGTCAATGGC
AGAGTTTGGGTGGACttgaatttcaatgactgtGGATTCCGAAGCTACGA
AGACGGGTTTAAAATGGTACACGAGCAAACTGTTCGCATCCAAAGCAGTT
TCTTGCAAAACTCGGCAACATTTCAGAGAGATTTTGATACAACATACATC
ATGAAATGTGTATTCGATCGTAGACTAAATGAAACATTGAGCATCTTTGT
CACTGATAGAGCAAATGAAACAAAGGAGGACGACTCCGTGTACAAGTTAG
GCTTCAAAGCAACAGAAGTGACAGAATTTGGTACAGGCAAAGAAGTCGAG
GGACTTATTCGTATTGGAGACCGACTCAAAATGGAGATTAACATGGTCAA
CAACTTTACATCTGTTAAAACATCACCTCAAAGTTGTTACGCAACCAGAT
TAGATGGAACTggaaaaaaagactttattAAAAACAGATGCTCGGTTGAT
TTTGGCACAAGAATCCTATCACCAAGCAATGCTATCCACATATTTGAATG
GGAGTTGGTTGTCGGCCGATTCTTCGATGATTCTGATGGcatcaaaatca
tttgtgaAGTGTCCATCTGTAACAATGCACCTTATGGAGACCTGAATGAA
GAGTGTAAAAGATGTGGACAAacaaccaaaaaacgtaaacgaAGGAATAT
CGATGacgaaaaagagaaaatcacaaaagaaacaGCTACCCGTACATTCT
ATATTATAGACAAAGAGACCCCGCCAGCAACATCGGCACCAAGCACTGAT
GGTTTCGCCAAAAAGCCTGAAGGGATTACGGTCATCGTTTTATCGGCCTT
GTTAATACTGCTTTGTGTTGTTCTGgtcaaaaaaatgttctttggtACCA
AACGaagaaatgagaaaaacaaaGCTCGTGCGATTGAATTGGAGCGTGGG
ACTAATGAGTGATTGTTCTCTGGCAAAAGAAAACTGAAGGCCAGTATCAT
CAGAGTatgaaaaacaaagttttatttaatttctacaccattttaaggct
ttaataAAACGTAATTTTATTTCCAATACTTATTCATTATTGTAAGCACA
TTTTATAAAGATATTCTAAATTACTTCAAATAGCCCATAGTTTCTTTGAC
TTATCCTCAAcatgaaaagtgaaattttatgattagaaagaaatattttt
catttcgtttgCAATACACTAC
Run BLAST on NCBI

transcript from alignment at scaffold_58:525117..529399-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070959 ID=TCONS_00070959|Name=TCONS_00070959|organism=Clytia hemisphaerica|type=transcript|length=4283bp|location=Sequence derived from alignment at scaffold_58:525117..529399- (Clytia hemisphaerica)
CGACGACAACAACTTTTTCACCGCCGAAAACAACTTTTCCACCGACAACA
ACTTTTCCACCGACGACAACTTCTCCACCGACGACAACTTCTCCACCTAC
GACAACAACTTTTCCACAACCACAACCGACAACCACTCCACCGACGACAA
CCACAGCAACAAGTAAGTCGGTACCTAGACTTTTAAGAAGTGTTTTTCAG
GGATGTAAATTTTTTTTTGGCAAAAATCTGCTTGAGCCATCTTTTACCTA
CGATGATACCCTACTTTCGTGCAAAAAAATCAAAAAAAATAATGATGCAA
TATTTCACAAAGTCCAAAAACCCATTTTTCAGCATTTTTTGGCCAAATTT
AACCAAAAAGTTTTTTTCCGAAAATCAGACTGCGTTACATTCGAGGGTTT
ATAGTCATGCAGCTTTGTGCCAAAAATCAGAAAATTTGAATGAGCCAATC
TCGAGAAAAGCTGATAACTAAAGCACAAACCCACGAACGCACGAACGCAC
GAACGAACATGGGTTAATTTATAGGACCTCCACCGGGGTAGGTCCAAAAG
ACTTAAAAATATTACATCCACTCACTTTTTATGTACCTTCCAAACTAATT
CATTTTTCTTCACTTCCAGCTGAACCAGATGGCTATTACTTTTGGAGTGG
ATGGACAGCGTGGGGTTCTTGCAATGGACATTTAAAGACGAGATACCGAT
ATTGCTTTCACTTTCACTTTAGCTCCTCTCAAACAACCCTAGCACCTTCG
CAAGCACCGTTTGAAAACTGCCCAGGCTTTTTTTATGAATATTCTAGCCA
TGGATGTAGTAAGTAACTTTAATTAATTTTTTACTCAATCGTTAAAAGAT
TATTTAAACCAGACAAAACAAGTAGAATAAAGCAACAAACAAATTATTCA
CTACCCGTTTTTTATGGTTTATAAATACGGAAGATATAATCATACATCTC
TTCAACATTAGCAACAACCACTCCATCGACGACAACAACTTTTCCACCGA
CGACAACAACTTTTCCACCGACGACAACAACTTTTCCACCGACGACAACA
ACTTTCCCACCGACGACAACAACTACTGCCGCTCCACCAACAACTACCGC
CTATCCACCAACAACTACTGCCGCTCCAACAACAACTACCGCCTATCCAC
AAACAACTACTGTCTATCCACAAACAACTACTGCCTATCCAACAACAAGT
ACTGCCTATCCACAAACAACTACTGCCGCTCCAACAACAACTACTGCCTA
TCCACAAACAACTACTGCCTATCCACCAACAACTACCGCCTATCCACCAA
CAACTACTGCCTATCCACAAACAACTACTGCCTATCCACAAACAACTACT
GCCTATCCACAAACAACTACTGCCTATCCAACAACAAGTACTGCCTATCC
ACAAACAACTACTGCCGCTCCAACAACAACTACTGCCTATCCACAAACAA
CTACTGCCTATCCACAAACAACTACTGCCTATCCACCAACAACTACCGCC
TATCCACCAACAACTACTGCCTATCCACCAACAACTACTGCCTATCCACA
AACAACTACTGCCGCTCCACCAACAACTACTGCCTATCCACCAACAACTA
CTGCCTATCCACAAACAACTACTGCCTATCCACCAACAACTACCGCCTAT
CCACCAACAACTACTGCCTATCCACCAACAACTACTGCCTATCCACAAAC
AACTACTGCCGCTCCACCAACAACTACTGCCTATCCACCAACAACTACTG
CCTATCCACAAACAACTACTGCCTATCCACCAACAACTACCGCCTATCCA
CCAACAACTACTGCCGCTCCAACAACAACAGTTGCACCTCCAGATGTAGT
AGATTTACAATGCAATCCAGATGGATTTAAAGCTGGATTCCTTTTGACCA
ACTTCGAAGACAGTTATTACAATGTCACAAAAATCCACTTCGGTGATAGT
TCATGTATTACAAACGACATCAACGGAAACATTAATATTCAACGACAGAC
CGTCAATGGCAGAGTTTGGGTGGACTTGAATTTCAATGACTGTGGATTCC
GAAGCTACGAAGACGGGTTTAAAATGGTACACGAGCAAACTGTTCGCATC
CAAAGCAGTTTCTTGCAAAACTCGGCAACATTTCAGAGAGATTTTGATAC
AACATACATCATGAAATGTGTATTCGATCGTAGACTAAATGAAACATTGA
GCATCTTTGTCACTGATAGAGCAAATGAAACAAAGGGTAGGTTCCTTTTA
AAACTTTAAATCGAGATATTTCGTTACTTTAGTAAAACCAGTGAATTTTT
AATGAGGCTCTGCTGTGCCTATTATTTTTTTCTCATCTTCTTGTTCATAC
TTCTAGGGCAAAACTAAGGTATTTTAGGTTAAATTCCACTAAGCACCGAG
ACAGAAATGTTCAATCTTTCTCATCGATTATTTCAGAGGACGACTCCGTG
TACAAGTTAGGCTTCAAAGCAACAGAAGTGACAGAATTTGGTACAGGCAA
AGAAGTCGAGGGACTTATTCGTATTGGAGACCGACTCAAAATGGAGATTA
ACATGGTCAACAACTTTACATCTGTTAAAACATCACCTCAAAGTTGTTAC
GCAACCAGATTAGATGGAACTGGAAAAAAAGACTTTATTAAAAACAGGTG
GGTTTATGTACTTTCACTTTTGGAACACATAAAAAACATACAGGGGGTTA
GCGAACCTTTTCAAGTCAAAAAGAAATTATTGAAAATGTGTAGATAACCC
CTTGAAAATGGCAAAATTTGCTTGGAAAAGTTCTCTTCGTACCTTAAAGC
GAGGGTGGACAAATTAAAGTCAATTTTTTAACTTTTAAAGTTTTAGAATA
ACTTTTTATCCCCTTGGAAAAATGAAAAAACACCCCCTGGAAATTTTTCT
CAGATTACCCTCTGGAAATGTTCGTCCACCCCATGTATAGATATAAAATG
GAATGGCCCTGTCGGTTTTGAAAATTGGCAAAGTAGATAATATGGTTGGA
AATATAGTCGATGAAGAAACTTCAGAATGGTGTGATTTTGACTGAGACTA
TTTTCCTTTAAATCCCCAAACCAAACCACTCCAATTTAGATGCTCGGTTG
ATTTTGGCACAAGAATCCTATCACCAAGCAATGCTATCCACATATTTGAA
TGGGAGTTGGTTGTCGGCCGATTCTTCGATGATTCTGATGGCATCAAAAT
CATTTGTGAAGTGTCCATCTGTAACAATGCACCTTATGGAGACCTGAATG
AAGAGTGTAAAAGATGTGGACAAACAACCAAAAAACGTAAACGAAGGAAT
ATCGATGACGAAAAAGAGAAAATCACAAAAGAAACAGCTACCCGTACATT
CTATATTATAGACAAAGGTACCTCCAATTTTATTAAGTTTTCTTTATAAA
CCAACAAACACTAGAGTACACTGAAAACATCTCCATAACAACATCTCTAA
AATTTAAAGCCAAATTGTGTCTCCAAATGGATTGCACTGTGACACCCCAT
TGATATTTCATTCGAAATTTTTATCCCCACTGTAGGAAAAAGTTTCACCG
GGGCTGCAAGACAGGGGTGTACTGTGTCTTAGAATGAAATGGAATCCACC
TACTAATTTGTGACTTCTTAAAAAATTCTACAGATGTCAATTTGAGTCTT
TTTTTCAAAATCTGCTAAACTAAACCTTTACATCAGTCCTTACATATAGG
GATTTTATAATGATGCTTTAACTAGACAAAATCAACCCATCGTATCTATG
GTTATCATTTTCGAAATAAAAAACACTGTTTCTATATTCCCTCTCTATCT
CCCCTTTTTATATTCTATTGTTATAGAGACCCCGCCAGCAACATCGGCAC
CAAGCACTGATGGTTTCGCCAAAAAGCCTGAAGGGATTACGGTCATCGTT
TTATCGGCCTTGTTAATACTGCTTTGTGTTGTTCTGGTCAAAAAAATGTT
CTTTGGTACCAAACGAAGAAATGAGAAAAACAAAGCTCGTGCGATTGAAT
TGGAGCGTGGGACTAATGAGTGATTGTTCTCTGGCAAAAGAAAACTGAAG
GCCAGTATCATCAGAGTATGAAAAACAAAGTTTTATTTAATTTCTACACC
ATTTTAAGGCTTTAATAAAACGTAATTTTATTTCCAATACTTATTCATTA
TTGTAAGCACATTTTATAAAGATATTCTAAATTACTTCAAATAGCCCATA
GTTTCTTTGACTTATCCTCAACATGAAAAGTGAAATTTTATGATTAGAAA
GAAATATTTTTCATTTCGTTTGCAATACACTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044104XLOC_044104Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070959-exon-scaffold_58-1575043694:529238..529399TCONS_00070959-exon-scaffold_58-1575043694:529238..529399Clytia hemisphaericaexon
TCONS_00070959-exon-scaffold_58-1575043694:528592..528780TCONS_00070959-exon-scaffold_58-1575043694:528592..528780Clytia hemisphaericaexon
TCONS_00070959-exon-scaffold_58-1575043694:527164..528438TCONS_00070959-exon-scaffold_58-1575043694:527164..528438Clytia hemisphaericaexon
TCONS_00070959-exon-scaffold_58-1575043694:526753..526963TCONS_00070959-exon-scaffold_58-1575043694:526753..526963Clytia hemisphaericaexon
TCONS_00070959-exon-scaffold_58-1575043694:526033..526310TCONS_00070959-exon-scaffold_58-1575043694:526033..526310Clytia hemisphaericaexon
TCONS_00070959-exon-scaffold_58-1575043694:525117..525573TCONS_00070959-exon-scaffold_58-1575043694:525117..525573Clytia hemisphaericaexon
TCONS_00070959-exon-scaffold_58-1510915933:529238..529399TCONS_00070959-exon-scaffold_58-1510915933:529238..529399Clytia hemisphaericaexon
TCONS_00070959-exon-scaffold_58-1510915933:528592..528780TCONS_00070959-exon-scaffold_58-1510915933:528592..528780Clytia hemisphaericaexon
TCONS_00070959-exon-scaffold_58-1510915933:527164..528438TCONS_00070959-exon-scaffold_58-1510915933:527164..528438Clytia hemisphaericaexon
TCONS_00070959-exon-scaffold_58-1510915933:526753..526963TCONS_00070959-exon-scaffold_58-1510915933:526753..526963Clytia hemisphaericaexon
TCONS_00070959-exon-scaffold_58-1510915933:526033..526310TCONS_00070959-exon-scaffold_58-1510915933:526033..526310Clytia hemisphaericaexon
TCONS_00070959-exon-scaffold_58-1510915933:525117..525573TCONS_00070959-exon-scaffold_58-1510915933:525117..525573Clytia hemisphaericaexon
TCONS_00070959-exon-scaffold_58-1491911889:529238..529399TCONS_00070959-exon-scaffold_58-1491911889:529238..529399Clytia hemisphaericaexon
TCONS_00070959-exon-scaffold_58-1491911889:528592..528780TCONS_00070959-exon-scaffold_58-1491911889:528592..528780Clytia hemisphaericaexon
TCONS_00070959-exon-scaffold_58-1491911889:527164..528438TCONS_00070959-exon-scaffold_58-1491911889:527164..528438Clytia hemisphaericaexon
TCONS_00070959-exon-scaffold_58-1491911889:526753..526963TCONS_00070959-exon-scaffold_58-1491911889:526753..526963Clytia hemisphaericaexon
TCONS_00070959-exon-scaffold_58-1491911889:526033..526310TCONS_00070959-exon-scaffold_58-1491911889:526033..526310Clytia hemisphaericaexon
TCONS_00070959-exon-scaffold_58-1491911889:525117..525573TCONS_00070959-exon-scaffold_58-1491911889:525117..525573Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:525117..529399 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0381071	0.0723578	0.0402488	0.0750502	0.345947	0.362379	0.293503	0.505986	0.383996	2.49142	0.270511	0.24564	11.7987	11.3762	0.0381517	0.157887	0.0444669	0.0438515	26.557	40.5561	0	0.0480486	0.0791976	0.0328419	0.448953	0.169635	0	0	0	0.0309081
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070959 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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