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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070947 ID=TCONS_00070947|Name=TCONS_00070947|organism=Clytia hemisphaerica|type=transcript|length=2051bpRun BLAST on NCBI protein sequence of TCONS_00070947-protein >TCONS_00070947-protein ID=TCONS_00070947-protein|Name=TCONS_00070947-protein|organism=Clytia hemisphaerica|type=polypeptide|length=627bp MDSKSKVKKKYLDKGLAKLQRAAEADRQDNLTEALSLYVKGTGHLYNSLQRun BLAST on NCBI transcript from alignment at scaffold_58:310574..318496- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070947 ID=TCONS_00070947|Name=TCONS_00070947|organism=Clytia hemisphaerica|type=transcript|length=7923bp|location=Sequence derived from alignment at scaffold_58:310574..318496- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_58:310574..318496- >TCONS_00070947 ID=TCONS_00070947|Name=TCONS_00070947|organism=Clytia hemisphaerica|type=CDS|length=26334bp|location=Sequence derived from alignment at scaffold_58:310574..318496- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070947 vs. Swiss-Prot (Human)
Match: VPS4A (Vacuolar protein sorting-associated protein 4A OS=Homo sapiens GN=VPS4A PE=1 SV=1) HSP 1 Score: 231.876 bits (590), Expect = 7.535e-68 Identity = 136/356 (38.20%), Postives = 206/356 (57.87%), Query Frame = 1
Query: 1030 LANAQTIIAMATHEDLKGNYSEALLKYEDAVKLFYYILREYPAIAPASKESIRSHCVLYQDRIDTLKGMLAH--------LNPCQRSVSRDTSDIEFDKEYKE--------VITTEKPNTTLNTVAGHDQAKELMISTILSPIKFPQAFAVSNGQNP-RNILLYGPPGCGKTYLAKALACESKTAAYFYTKASNLVSKYLSNRERLIEVLFEKAREHSPSIIIVDDLEYLQHKGNESE-DSFWKPKQQLAAQITE-KSNVPGVYVIGVTNKPWNLDSTFKQSFDRCVGVTLPDLPSRIKILDSHLKMIQHSLNERQMLQLAHQTDGFSGADISTLLHDALMLPVYRLQNATHFRMV 2040
L A ++ AT ED NY EAL Y+ AV+ F + ++ Y A + +KESIR+ CV Y DR + LK L + Q SD E D K+ + EKPN N VAG + AKE + ++ PIKFP F + + P R ILL+GPPG GK+YLAKA+A E+ + +F +S+L+SK+L E+L++ LFE AR+H PSII +D+++ L NE+E ++ + K + Q+ +N G V+G TN PW LDS ++ F++ + + LP+ +R ++ HL H+L + + +LA +T+G+SGADIS ++ D+LM PV ++Q+ATHF+ V
Sbjct: 6 LQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIK-YEAHSDKAKESIRAKCVQYLDRAEKLKDYLRSKEKHGKKPVKENQSEGKGSDSDSEGDNPEKKKLQEQLMGAVVMEKPNIRWNDVAGLEGAKEALKEAVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRKVQSATHFKKV 358 The following BLAST results are available for this feature:
BLAST of TCONS_00070947 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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