TCONS_00070901 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070901
Unique NameTCONS_00070901
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length678

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070901 ID=TCONS_00070901|Name=TCONS_00070901|organism=Clytia hemisphaerica|type=transcript|length=678bp
GTCCACTCTATAGCAATTTAGACTCATGCCTCTTTAATGTACAAAAGACG
AAAAATTACTTTAACAATATATTTAGAagtaaatttacaaaaatacaacC
CGAGATAACCTACACCAATAGTGAAAATGGCCGAAGCACCGCCACCCTAC
GATGTTGACCCTCAACCGACACAAGGATCAAGTGATGAAGGTATCAGATT
GAACCCTGGCTTCATAAGAACACCTCCTGGTTTGTTACTCGTCATCAATC
TTGTTCTGTTATTTTTGTCATGGTGCATAATGGCAGGCTGGAGAGGGGAA
GTACATTGGACTGTGGAAATTCACTTTGAAGGAGGAAGTGGATTTTATTT
GGCCACAACACTTATTCCATGGTTTATCCTTCTCGTTGTTTTTGTTCTCA
TGTTGTTCAATATCCACAAGAAAATTCCAATCAATTTTCCTGTAACGTTG
ATGATTAACTGTCTTCTGTGGGCAGTATTGTTGTTTATTGCATCATGTGT
GGTAGCTGATAAAGCTCGTAAATGGAATGTGAATGGAGACGCTTGCGATT
TTTACAGTTGCAATCATCTTGGTGCTGCAGCGGCTTTTGGGTTTTTCTCA
GTGGTTGGATTAGGAGCACAAGCATTTTTACACTTCCGAGAATGGAGAAG
TCCTTAAATTTTGGCACAAAAATCAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_58:118642..121780-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070901 ID=TCONS_00070901|Name=TCONS_00070901|organism=Clytia hemisphaerica|type=transcript|length=3139bp|location=Sequence derived from alignment at scaffold_58:118642..121780- (Clytia hemisphaerica)
GTCCACTCTATAGCAATTTAGACTCATGCCTCTTTAATGTACAAAAGACG
AAAAATTACTTTAACAATATATTTAGAAGTAAATTTACAAAAATACAACC
CGAGATAACCTACACCAATAGTGAAAATGGCCGAAGCACCGCCACCCTAC
GATGTTGACCCTCAACCGACACAAGGATCAAGTGATGAAGGTATCAGATT
GAACCCTGGCTTCATAAGAACACCTCCTGGTTTGTTACTCGTCATCAATC
TTGTAAGTCTTTTTTATATAAGAACATTAGTCTCAATTTTGACGATTCTA
ACAGAAAATATTTTGAATGATCGAAAGGGCTATGAGGATTTGACTTCAAA
AAATGACTATAAAAATCTTGACTTCATATATTTTTTTAATCAAATGTTCA
TTTGCTCTCAAGGTCCTAAAGCCTATACAGTATCTGGACACTTACCTATT
TTAAAAATTTCTCAGTGCGCATTGACGCTACTATGAGACACCCCTGTGTC
ACAGACCTGCTGGACACTAGAAAATTTTGCCAAAATCGCATCCCAGTTGG
GATTGACTTTGATTTTATCTCTATTCGAAATTCAATGTAAAAATTTGCAC
TCCAAAACCATCCCCATTGGACTTTTTTAGCTTTAAAACTATAGAATTTC
CCCATTGGGATTTCGATAGAAATTTTCTATCACTTCTATGTTCCAAAGCC
GGGTGTTATAAGATATTTCTAAGGAGAATAATCTAAAGGATAAAAGACTT
GGAAAATGGAAAAGAAAAATGTGACGAACAAGCTACAGGCTGAATGGACC
TACCTGAAGATTGATGTAATAAGAAGATGGGAAAAAATGACAACAATAGC
AAAAAAAGGCAGACTAAAAATCAAGAGAGATACAAAAGATCTGAACGCAG
GTTTAAAATCATCAAGGTGATTATTCTCCTTGGAAATATCAACGATGCAG
AGCTTATTTCTATATGGCTTTGTACCGCTGTGGGGGACTTTCGAGGGTGT
AAAAAGGACCCTTTTCACAGACCCGGTAGGAATTTTGGGAATTTCCGCTG
GGAGTTTGATTTCCATAGTTTGCAGTGAGGGGGTCCCACCAGGTCTGTGA
GAAAGGGGTGTCTAATTGCTCGCACATATGCGGCACCATCTAAGTACCCA
CCTCCCCCCAGGGAAAGCTGGTGTCCTCATTGAAATTCTTATAGAGAGTG
ACCATAATTTCCAGTTCACACAGCAGTACACTTAGAAGTTTGAATTCTGT
TGAAGATTTTCAAATTTGATTTCTCAGGTTCTGTTATTTTTGTCATGGTG
CATAATGGCAGGCTGGAGAGGGGAAGTACATTGGACTGTGGAAATTCACT
TTGAAGGAGGAAGTGGATTTTATTTGGCCACAACACTTATTCCATGGTTT
ATCCTTCTCGTTGTTTTTGTTCTCATGTTGTTCAATATCCACAAGAAAAT
TCCAATCAATTTTCCTGTAACGGTGAGTGTGTCATAAGTTTTTTATTCAA
ACAAAAATGAGGAACTTTTTCGCGTACAACTCCTTCAAGGAGTGTCGCTT
TATTGACAGACATTTTGACCAAAATGACATCATTAATTTTGGCATGTACT
ATTATTTTAGGATCGCTGTTGAAAAAGAAAGAAACTGTATTCTAATTCGT
AATCAATTTGAGTTGCTTATAATAAACTTATAAAACTATCGATAAGGATC
TGCAACATACCTTAGGGGAAGAAATTTTGGTGGATATGGCGGATGTTTCC
CGTCATTTACTAAATTTAAATTATTGTATTCCTTCCCTCAAATATGTCCT
ACCTTAAGAGAACTTTTTTTTTTGGCGAGAACTAATTTTGACGAACGGTC
GATTGAAATTCTTTTTTTCAATTTTGGCGAGAACTAATTTTGGCGAATCA
ACGACTTATTAAATTTTGACGATAACTTATTTTGGCGAATGACAGCGTAA
ATCTGTTCTATTTTGCCTTATTTGAAGCTTTTTTTGTGAAGTTATTTAGG
CAAAATACCAAAATTCTTAATTTTGGCGAGAACTAATTTTGGCGAACCAG
GATTTTTTTCAATTTTAGCGAGAACTATATTTGGCGAATGGCCTAAAAAA
TTAATTTTGGTGGGAACTAAATTTGGCGAATTTCGAGTTCGCCCGCCAAT
TTCGCCAAAACTAGTTCTCACCAAAATAAGTTCCTTTAAGGTATTTCAGA
TATTTAATGGCGGATTTTGCTAAAAGTATCCTTCATCCGCCAAATTTAAT
TTTTCAAGCCATCCACCAAATGANTTTCGCCAAAACTAGTTCTCACCGAA
ATAAGTTCGCTTAAGGTATTTCAGATATTTAATGGCGGATTTTGCTAAAA
GTATCCTCTTCATCCGCCAAATTTAATTTTTCAAGCCATCCACCAAATGA
AATCCCTCCAAAAAAATGCAGTATATACAGTATATATATATCGAGTAGTA
TACAGTATCCATATCGAACACACTCAATTAACTGTACTAAATGAATCTTC
AACTTCACTGTTATAGTTGATGATTAACTGTCTTCTGTGGGCAGTATTGT
TGTTTATTGCATCATGTGTGGTAGCTGATAAAGCTCGTAAATGGAATGTG
AATGGAGACGCTTGCGATTTTTACAGTTGCAATCATCTTGGTGCTGCAGC
GGTAAGTCGTTCACTGATAGAATCAAATTACCCACACCTCCTGCATAAGA
TTGTAAGCGCTTGCTATAGTCATTTGTAATTTTACTGCAACAATTTTATT
GCATTGCAAAAGCATTTTAGAATTTGCCGTGTTGAAATATTAAAATTTCT
TACGCACTTGCAACGCAATGTAAATTGCATTGTAACCGTCTTTAAAATCT
TTTCAGTGTAGCCTTAGCTTTATCAGAAAAATTTAAAAACTAGTATCAAC
TACCCCGAAGTGGGGTTGAATCTGTTTTTACTCTGCAAAGTAAAACGATA
TCAAATGTATCTGCCACTTAGACAATAAAAACGTTTACAAATCACTAACC
CAACTAAACGCATTGCATTAATTAGTTTTTTTCTCTTTTACAGGCTTTTG
GGTTTTTCTCAGTGGTTGGATTAGGAGCACAAGCATTTTTACACTTCCGA
GAATGGAGAAGTCCTTAAATTTTGGCACAAAAATCAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044087XLOC_044087Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070901-exon-scaffold_58-1575043694:121529..121780TCONS_00070901-exon-scaffold_58-1575043694:121529..121780Clytia hemisphaericaexon
TCONS_00070901-exon-scaffold_58-1575043694:120309..120503TCONS_00070901-exon-scaffold_58-1575043694:120309..120503Clytia hemisphaericaexon
TCONS_00070901-exon-scaffold_58-1575043694:119130..119264TCONS_00070901-exon-scaffold_58-1575043694:119130..119264Clytia hemisphaericaexon
TCONS_00070901-exon-scaffold_58-1575043694:118642..118737TCONS_00070901-exon-scaffold_58-1575043694:118642..118737Clytia hemisphaericaexon
TCONS_00070901-exon-scaffold_58-1510915933:121529..121780TCONS_00070901-exon-scaffold_58-1510915933:121529..121780Clytia hemisphaericaexon
TCONS_00070901-exon-scaffold_58-1510915933:120309..120503TCONS_00070901-exon-scaffold_58-1510915933:120309..120503Clytia hemisphaericaexon
TCONS_00070901-exon-scaffold_58-1510915933:119130..119264TCONS_00070901-exon-scaffold_58-1510915933:119130..119264Clytia hemisphaericaexon
TCONS_00070901-exon-scaffold_58-1510915933:118642..118737TCONS_00070901-exon-scaffold_58-1510915933:118642..118737Clytia hemisphaericaexon
TCONS_00070901-exon-scaffold_58-1491911889:121529..121780TCONS_00070901-exon-scaffold_58-1491911889:121529..121780Clytia hemisphaericaexon
TCONS_00070901-exon-scaffold_58-1491911889:120309..120503TCONS_00070901-exon-scaffold_58-1491911889:120309..120503Clytia hemisphaericaexon
TCONS_00070901-exon-scaffold_58-1491911889:119130..119264TCONS_00070901-exon-scaffold_58-1491911889:119130..119264Clytia hemisphaericaexon
TCONS_00070901-exon-scaffold_58-1491911889:118642..118737TCONS_00070901-exon-scaffold_58-1491911889:118642..118737Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:118642..121780 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
75.7494	81.5425	43.0007	38.6453	2.51126	0.587194	24.3429	19.9529	87.6111	97.5487	55.3586	57.3105	69.599	67.872	21.6504	24.7572	15.2754	14.7296	32.8269	40.2363	4.60536	6.1906	45.5246	31.2654	5.51563	4.05485	2.2594	2.39762	11.4817	18.0614
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070901 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top