TCONS_00070889 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070889
Unique NameTCONS_00070889
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length436

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070889 ID=TCONS_00070889|Name=TCONS_00070889|organism=Clytia hemisphaerica|type=transcript|length=436bp
GCTGAAATAAAGATGATGTAATCTTATAACCATTTAATAATTGATTTGAC
CATTTCTTTCCGAAATAAGCTTTTCGTGGGAAGTTCTAAAGATTGATGAT
TTCTATTCGAAGATGGAGTGCAGTTTACAGGTAGCTTACTAATCTTTTCA
GGACAAATCCATGTCTCCTAAGTAgaggttaaaaacttttttcgaaTAAA
GAACGCCTCTCATTGCTTCTTAATACTGACTCTTGCCTTTTTCATCATTC
AGTTTTAATCCTAAGCATTTATTTTAATTACTCTCTCATTAATCAGCGTA
CAATGCAACCCACATTAACCTCTATACAACTTATTAATCGAATTATTCTC
CTAGGTTCATATACAAACTATTGATTAGTTAATTAAAGGCTATTATATCC
CTACAAATCTGTGAACTTTATGTTTTTAAGAATGCT
Run BLAST on NCBI

transcript from alignment at scaffold_58:1417534..1417969+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070889 ID=TCONS_00070889|Name=TCONS_00070889|organism=Clytia hemisphaerica|type=transcript|length=436bp|location=Sequence derived from alignment at scaffold_58:1417534..1417969+ (Clytia hemisphaerica)
GCTGAAATAAAGATGATGTAATCTTATAACCATTTAATAATTGATTTGAC
CATTTCTTTCCGAAATAAGCTTTTCGTGGGAAGTTCTAAAGATTGATGAT
TTCTATTCGAAGATGGAGTGCAGTTTACAGGTAGCTTACTAATCTTTTCA
GGACAAATCCATGTCTCCTAAGTAgaggttaaaaacttttttcgaaTAAA
GAACGCCTCTCATTGCTTCTTAATACTGACTCTTGCCTTTTTCATCATTC
AGTTTTAATCCTAAGCATTTATTTTAATTACTCTCTCATTAATCAGCGTA
CAATGCAACCCACATTAACCTCTATACAACTTATTAATCGAATTATTCTC
CTAGGTTCATATACAAACTATTGATTAGTTAATTAAAGGCTATTATATCC
CTACAAATCTGTGAACTTTATGTTTTTAAGAATGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044081XLOC_044081Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070889-exon-scaffold_58-1491911889:1417534..1417969TCONS_00070889-exon-scaffold_58-1491911889:1417534..1417969Clytia hemisphaericaexon
TCONS_00070889-exon-scaffold_58-1510915933:1417534..1417969TCONS_00070889-exon-scaffold_58-1510915933:1417534..1417969Clytia hemisphaericaexon
TCONS_00070889-exon-scaffold_58-1575043694:1417534..1417969TCONS_00070889-exon-scaffold_58-1575043694:1417534..1417969Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:1417534..1417969 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.468869	0	0	0	0	0	0.602805	0.188113	0	0	0.475027	0.624528	0.103943	0.107946	0.268495	0.190477	0.236595	0.481022	0.332279	0.173853	0.760531	0.884472	0	0.327089	0.335602	0.599034	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070889 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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