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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070877 ID=TCONS_00070877|Name=TCONS_00070877|organism=Clytia hemisphaerica|type=transcript|length=1120bp
CTTAGATAAACATGACAAACACATTGTTAGAAATGAGTTACTTATATCGC
CACTTATACAAACTGAAATTGGAAATGCAAAATACTAAATCGAGAAAGAT
GTTACTTTACCGTCAATTGATGGATTGTTTACTTGGTTTGGTGTTATATT
TGGTATTGAAAAGAACGATAGATGGGTTGGATATTGATTCGAATTTTACA
GATTTCGTATTACTGGTTCAAGATGATCTAACGAAGCTTTTGCAATGGTT
GATGGGAGCACCTGCTGGTCTGAAACTGAACGAAGAACTTTCATTTTTCC
TTGGAAATGTGTTCCTTTACCACGTCAACGTGTGGGTTGCTTACGTTCTC
ACCATCAAAACTTTCCTTCCACAAATCATACAGATTCTCATGATGTCCAA
TATTCTCGGTCTCGGcatttttttctgtttgatCAATGACGTTATCAGTA
TTTTGAGCGTCCACCTTCACTGTTTTTACTTCTATGCTTCCAATCTTTAT
CGGATACAATTGAAATCATTGATGACACTTGCAAGACTTTTCAGAGgtaa
gAAATGGAATGTGCTTCGCCTTCGTGTGGATTCTTTATCATACAATGCAG
ACCAACTCATCTTGGGAACAGTGCTCTTCACCATTCTCTTGTTCTTACTA
CCAACAGTGGCTTTGTATTACTTCGTTTTCATCATCATTCGACTCCTCAT
TTCTTTGCTACAAATGTTCTTTCAATTGATGGCTAATAGTTTGTTGAATA
AATTACACTCTTTGGTATGCTCAAATGAGAATAGCATAGGTTAGTTTACG
AAGATACCAAGATAATATACttgacgttctctaattcgaaatttgatttt
tataagtTAGAATATCGAGCAGtagactttcaatattatcaattaATGGA
gcgtactttaggcgtagaaactttcgcgagcagaaactttcgcgattttc
gcgaattttggcccttttcgcgaaagtaaatgtctttaaaaattctagga
agactaataagtcaaaggacaaatgtttcaagccaacccaagaagtatct
gtgtctctaagccattttttcatgtgaaaattctcaattttacgtcttga
ttcgagaaagtttatgcttg Run BLAST on NCBI transcript from alignment at scaffold_58:1199384..1201070+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070877 ID=TCONS_00070877|Name=TCONS_00070877|organism=Clytia hemisphaerica|type=transcript|length=1687bp|location=Sequence derived from alignment at scaffold_58:1199384..1201070+ (Clytia hemisphaerica)
CTTAGATAAACATGACAAACACATTGTTAGAAATGAGTTACTTATATCGC
CACTTATACAAACTGAAATTGGAAATGCAAAATACTAAATCGAGAAAGAT
GTTACTTTACCGTCAATTGATGGATTGTTTACTTGGTTTGGTGTTATATT
TGGTATTGAAAAGAACGATAGATGGGTTGGATATTGATTCGAATTTTACA
GATTTCGTATTACTGGTTCAAGATGATCTAACGAAGCTTTTGCAATGGTT
GATGGGAGCACCTGCTGGTCTGAAACTGAACGAAGAACTTTCATTTTTCC
TTGGAAATGTGTTCCTTTACCACGTCAACGTGTGGGTTGCTTACGTTCTC
ACCATCAAAACTTTCCTTCCACAAATCATACAGATTCTCATGATGTCCAA
TATTCTCGGTCTCGGcatttttttctgtttgatCAATGACGTTATCAGTA
TTTTGAGCGTCCACCTTCACTGTTTTTACTTCTATGCTTCCAATCTTTAT
CGGATACAATTGAAATCATTGATGACACTTGCAAGACTTTTCAGAGGTAA
CTGTATTCCTTTGTAAAGATGATGTTGATAATTTATAAAGTCCTTTTCCG
CTTGAAAAACCTTTTAATGTCCCGTATCTTTAAAATTTGACGTAATTTTC
TACAAGAGTTTCTGAAAATATCCGTTCCTGAACGAAATATTAACATTGGT
AGCTCTAATTTAGACTGTCGACTTTCTAATataccttatcggagtttttt
atttttctaaaaaagtgatgcattgtgggattgtttcgagtgtattacaa
tagaattccctcgaggaattcctaagagatttctattgtaatacactcga
aacaatcccacaatgcatcacttttttagaaaaataaaaaactccgataa
ggtctattgttaCAGTGGGCAAAAAAGTGGGTAGAAAGTTggtagttaaa
atctttgcttgaagaagattgaaagaagacaatgcattgactttagacag
ccaactttcTACCCATTTCAATTGAAAATCGTCCGAATAAACCAGAAGTG
AAGAAGGTTTAAAGCGCATCTCTGCACAAATGTAGCTTGTTTtattcgtg
ttttttttttcaggtaagAAATGGAATGTGCTTCGCCTTCGTGTGGATTC
TTTATCATACAATGCAGACCAACTCATCTTGGGAACAGTGCTCTTCACCA
TTCTCTTGTTCTTACTACCAACAGTGGCTTTGTATTACTTCGTTTTCATC
ATCATTCGACTCCTCATTTCTTTGCTACAAATGTTCTTTCAATTGATGGC
TAATAGTTTGTTGAATAAATTACACTCTTTGGTATGCTCAAATGAGAATA
GCATAGGTTAGTTTACGAAGATACCAAGATAATATACttgacgttctcta
attcgaaatttgatttttataagtTAGAATATCGAGCAGtagactttcaa
tattatcaattaATGGAgcgtactttaggcgtagaaactttcgcgagcag
aaactttcgcgattttcgcgaattttggcccttttcgcgaaagtaaatgt
ctttaaaaattctaggaagactaataagtcaaaggacaaatgtttcaagc
caacccaagaagtatctgtgtctctaagccattttttcatgtgaaaattc
tcaattttacgtcttgattcgagaaagtttatgcttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070877-exon-scaffold_58-1491911889:1199384..1199929 | TCONS_00070877-exon-scaffold_58-1491911889:1199384..1199929 | Clytia hemisphaerica | exon |
| TCONS_00070877-exon-scaffold_58-1510915933:1199384..1199929 | TCONS_00070877-exon-scaffold_58-1510915933:1199384..1199929 | Clytia hemisphaerica | exon |
| TCONS_00070877-exon-scaffold_58-1575043694:1199384..1199929 | TCONS_00070877-exon-scaffold_58-1575043694:1199384..1199929 | Clytia hemisphaerica | exon |
| TCONS_00070877-exon-scaffold_58-1491911889:1200497..1201070 | TCONS_00070877-exon-scaffold_58-1491911889:1200497..1201070 | Clytia hemisphaerica | exon |
| TCONS_00070877-exon-scaffold_58-1510915933:1200497..1201070 | TCONS_00070877-exon-scaffold_58-1510915933:1200497..1201070 | Clytia hemisphaerica | exon |
| TCONS_00070877-exon-scaffold_58-1575043694:1200497..1201070 | TCONS_00070877-exon-scaffold_58-1575043694:1200497..1201070 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:1199384..1201070 + |
Blast
BLAST of TCONS_00070877 vs. Swiss-Prot (Human)
Match: PIGQ (Phosphatidylinositol N-acetylglucosaminyltransferase subunit Q OS=Homo sapiens GN=PIGQ PE=1 SV=3) HSP 1 Score: 168.703 bits (426), Expect = 4.139e-46 Identity = 92/180 (51.11%), Postives = 130/180 (72.22%), Query Frame = 3
Query: 216 VQDDLTKLLQWLMGAPAGLKLNEELSFFLGNVFLYHVNVWVAYVLTIKTFLPQIIQILMMSNILGLGIFFCLINDVISILSVHLHCFYFYASNLYRIQLKSLMTLARLFRGKKWNVLRLRVDSLSYNADQLILGTVLFTILLFLLPTVALYYFVFIIIRLLISLLQMFFQLMANSLLNKL 755
V ++L LLQWLMGAPAGLK+N L LG FLYH+++W++Y+ + F+ I+ + +S LGL + L++D+I++L+ H++CFY Y + LY +++ L +L RLFRGKKWNVLR RVDS SY+ DQL +GT+LFTILLFLLPT ALYY VF ++RLL+ +Q L+ + L+N L
Sbjct: 316 VAEELQHLLQWLMGAPAGLKMNRALDQVLGRFFLYHIHLWISYIHLMSPFVEHILWHVGLSACLGLTVALSLLSDIIALLTFHIYCFYVYGARLYCLKIHGLSSLWRLFRGKKWNVLRQRVDSCSYDLDQLFIGTLLFTILLFLLPTTALYYLVFTLLRLLVVAVQGLIHLLVD-LINSL 494
The following BLAST results are available for this feature:
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