|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070871 ID=TCONS_00070871|Name=TCONS_00070871|organism=Clytia hemisphaerica|type=transcript|length=497bp
GCGGAATACCGGCATGGCTGCTGATTGAAGAAGgcaattttttaatgatt
tttggtCGTAGGACTTTTTGGACTTTTGGTGGTTTTTGACTgtcattttg
gtgttttttgtaATACTCCTAGaGTCGCAAATAAGAGAAAATGAATCAAT
TAGCGGAACAGTCTTACATTCTGATGGCGAAACACGCTGACGTGCTCTGG
CTTATCCAAGTAANATTGTCtgtaagaccatgttcagacgttacggtttc
atATCGTTCCGGTACGATTTCTGTTACGGATCGATAGTGTTCATatttgg
tttcggaacgtttcggggCAAGAAAATGGAGCGGTTCCGTTCCAATGAAA
CCCTTTTGACCTGTTTTGCTTAGTaattgtaacgtcttcttttttgatgt
tTCAAATTTTGGCGCTCACAATTGTTTTGCAACCGGTCGTTTCGGAAcga
tacggaaccgtaacgtctgaacatggtctaaattattgttaaagaat Run BLAST on NCBI transcript from alignment at scaffold_58:1092221..1093822+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070871 ID=TCONS_00070871|Name=TCONS_00070871|organism=Clytia hemisphaerica|type=transcript|length=1602bp|location=Sequence derived from alignment at scaffold_58:1092221..1093822+ (Clytia hemisphaerica)
GCGGAATACCGGCATGGCTGCTGATTGAAGAAGgcaattttttaatgatt
tttggtCGTAGGACTTTTTGGACTTTTGGTGGTTTTTGACTgtcattttg
gtgttttttgtaATACTCCTAGGTAGGTTGATCTACATTTGATTTATTTA
GAGGTTAAGTCAGCTTTATACTGCTTTATATCAAGACTGTTAAATCTCTA
GTTTGCGCGATATCAACAAAGAAGTGtacgaccctgccggtgcacccgac
agtcgggtgttttgtcgggtgctgaaatttctaaatttgcgaaaacaccc
gacaaatagtgcacccgacagtcgggtgttttgtcgggtgctgaaatttc
taaatttgcgaaaacacccgacaaatagtgcacccgacagtcgggtgctt
aAATTCCTAACTTAGTAAAAACACCCGACGATCAACACCTGACATCGCCT
AATGGGCATTTTGCGGGTTTACGCCCTATACTATTTCCCGCTATCTTTGC
CATCTTTGCCGATGCCGTGGACGTCAGTCAAGGCGCTATTGTCACTGGGG
CATAAAAGGGCTGGCGTGTAAAATCGAATCTGCGATCGGAACTACCTGAG
GCTTTGTAGGGGTCTTCGATTCCTAATCGGTGAAAACAATTTCGGGGGCA
gaggaaagtgacgaaaattctaataagcttcggcgtaataagggccggtg
caTCTATCACCCAAACTCGAGTCGAACCTTAGTTTgcttttttgatttat
gatattCTGACAGCACTCTGTTGTTATCCGTGAAACGATTGTATCGCATC
CatcagtaaaattaaaaagtgcgaTGCAAGTGGTCCTGGGTACGATTTGG
GCGCGCAACCTCGTCCTGTGTATCCTAGGTTCTTTTACGATATTAATTAT
TACTGATCGATACGATAGAAAGGCCATACCTGACATTAACCTTTACCCCC
GGGAACCGACCTCCCATGTCAACTAAATCTCTCAATATCaatcattattt
tttcagaGTCGCAAATAAGAGAAAATGAATCAATTAGCGGAACAGGTGAT
CACTTTTAATTTGATATTTACATTTTAGTCGTAAAAAATTTGCTGTGTCT
TTCTTTCGATTCTGTACTTTGATCAAATATCAAATCAATGTTtcgatatt
cttaaattccagCCTGCACTCGATGGTCAATCTAGTTCTCCGTGTTTAGG
TTTGAGCATCGATGGTTTGAGGCATGACAATCCGTTCacttttttctctt
cttttcttcgTTTTAGTCTTACATTCTGATGGCGAAACACGCTGACGTGC
TCTGGCTTATCCAAGTAANATTGTCtgtaagaccatgttcagacgttacg
gtttcatATCGTTCCGGTACGATTTCTGTTACGGATCGATAGTGTTCATa
tttggtttcggaacgtttcggggCAAGAAAATGGAGCGGTTCCGTTCCAA
TGAAACCCTTTTGACCTGTTTTGCTTAGTaattgtaacgtcttctttttt
gatgttTCAAATTTTGGCGCTCACAATTGTTTTGCAACCGGTCGTTTCGG
AAcgatacggaaccgtaacgtctgaacatggtctaaattattgttaaaga
at
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070871-exon-scaffold_58-1491911889:1092221..1092342 | TCONS_00070871-exon-scaffold_58-1491911889:1092221..1092342 | Clytia hemisphaerica | exon |
| TCONS_00070871-exon-scaffold_58-1510915933:1092221..1092342 | TCONS_00070871-exon-scaffold_58-1510915933:1092221..1092342 | Clytia hemisphaerica | exon |
| TCONS_00070871-exon-scaffold_58-1575043694:1092221..1092342 | TCONS_00070871-exon-scaffold_58-1575043694:1092221..1092342 | Clytia hemisphaerica | exon |
| TCONS_00070871-exon-scaffold_58-1491911889:1093227..1093265 | TCONS_00070871-exon-scaffold_58-1491911889:1093227..1093265 | Clytia hemisphaerica | exon |
| TCONS_00070871-exon-scaffold_58-1510915933:1093227..1093265 | TCONS_00070871-exon-scaffold_58-1510915933:1093227..1093265 | Clytia hemisphaerica | exon |
| TCONS_00070871-exon-scaffold_58-1575043694:1093227..1093265 | TCONS_00070871-exon-scaffold_58-1575043694:1093227..1093265 | Clytia hemisphaerica | exon |
| TCONS_00070871-exon-scaffold_58-1491911889:1093487..1093822 | TCONS_00070871-exon-scaffold_58-1491911889:1093487..1093822 | Clytia hemisphaerica | exon |
| TCONS_00070871-exon-scaffold_58-1510915933:1093487..1093822 | TCONS_00070871-exon-scaffold_58-1510915933:1093487..1093822 | Clytia hemisphaerica | exon |
| TCONS_00070871-exon-scaffold_58-1575043694:1093487..1093822 | TCONS_00070871-exon-scaffold_58-1575043694:1093487..1093822 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:1092221..1093822 + |
Blast
The following BLAST results are available for this feature:
|
