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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070858 ID=TCONS_00070858|Name=TCONS_00070858|organism=Clytia hemisphaerica|type=transcript|length=1537bpRun BLAST on NCBI protein sequence of TCONS_00070858-protein >TCONS_00070858-protein ID=TCONS_00070858-protein|Name=TCONS_00070858-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp MVIKTEVILDIKPSSDRRDKQQFSLSNIFDYKMSETQKLIGCCVGIFVCYRun BLAST on NCBI transcript from alignment at scaffold_58:909674..928993+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070858 ID=TCONS_00070858|Name=TCONS_00070858|organism=Clytia hemisphaerica|type=transcript|length=19320bp|location=Sequence derived from alignment at scaffold_58:909674..928993+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_58:909674..928993+ >TCONS_00070858 ID=TCONS_00070858|Name=TCONS_00070858|organism=Clytia hemisphaerica|type=CDS|length=9126bp|location=Sequence derived from alignment at scaffold_58:909674..928993+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070858 vs. Swiss-Prot (Human)
Match: S35B1 (Solute carrier family 35 member B1 OS=Homo sapiens GN=SLC35B1 PE=1 SV=1) HSP 1 Score: 339.732 bits (870), Expect = 2.323e-112 Identity = 185/299 (61.87%), Postives = 237/299 (79.26%), Query Frame = 2
Query: 239 CCVGIFVCYFYYGILQEKITRTTYGD--EQEKFTYQQTLVWLQCVVNAAFAFLMLKR-TSSSLDNTPALMYIWCSISYMGAMLASNMALRYVNYPTQVLGKSCKPIPVMILGVLLARKRYPLMKYICVLFIVLGVALFFYKDKK--GKSTXXXXXXXXXXXXXXXXDGMTGASQDRMRGSYKTQAHAMMYNVNKYSILILGVMVLLTGEIFSFIAFIGRYPFVLWNMMLFSLTSALGQNFIFSTVASFGPLTCSVVTTTRKFFTILFSILFFGNPITSRQSFAVVLVFIGLGLDAKFGK 1120
C +G+FVCYFYYGILQEKITR YG+ +QE FT+ TLV++QCV+NA FA ++++ ++ +D T + +Y CSISY+GAM++SN AL++VNYPTQVLGKSCKPIPVM+LGV L +K+YPL KY+CVL IV GVALF YK KK G + GYGELLLLLSLTLDG+TG SQD MR Y+T ++ MM N+N +S L+LG+ +L TGE++ F++F RYP +++N++LF LTSALGQ+FIF TV FGPLTCS++TTTRKFFTIL S++ F NPI+ Q VLVF+GLGLDAKFGK
Sbjct: 17 CFLGVFVCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKILIQFFDTARVDRTRSWLYAACSISYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLKKKYPLAKYLCVLLIVAGVALFMYKPKKVVGIEEHTVGYGELLLLLSLTLDGLTGVSQDHMRAHYQTGSNHMMLNINLWSTLLLGMGILFTGELWEFLSFAERYPAIIYNILLFGLTSALGQSFIFMTVVYFGPLTCSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLGLGLDAKFGK 315 The following BLAST results are available for this feature:
BLAST of TCONS_00070858 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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