|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070842 ID=TCONS_00070842|Name=TCONS_00070842|organism=Clytia hemisphaerica|type=transcript|length=4767bpRun BLAST on NCBI protein sequence of TCONS_00070842-protein >TCONS_00070842-protein ID=TCONS_00070842-protein|Name=TCONS_00070842-protein|organism=Clytia hemisphaerica|type=polypeptide|length=510bp MALEIKKVLISDKVDSSCQTVLEENSIEVDYKPGLSKDELKAIIKDYDGLRun BLAST on NCBI transcript from alignment at scaffold_58:827295..836751+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070842 ID=TCONS_00070842|Name=TCONS_00070842|organism=Clytia hemisphaerica|type=transcript|length=9457bp|location=Sequence derived from alignment at scaffold_58:827295..836751+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_58:827295..836751+ >TCONS_00070842 ID=TCONS_00070842|Name=TCONS_00070842|organism=Clytia hemisphaerica|type=CDS|length=16863bp|location=Sequence derived from alignment at scaffold_58:827295..836751+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070842 vs. Swiss-Prot (Human)
Match: SERA (D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4) HSP 1 Score: 422.935 bits (1086), Expect = 1.404e-131 Identity = 219/409 (53.55%), Postives = 289/409 (70.66%), Query Frame = 2
Query: 3005 IKKVLISDKVDSSCQTVLEENSIEVDYKPGLSKDELKAIIKDYDGLIVRSATKVTQDVYDCAERLKIIGRAGTGVDNIDQISASAKGVLVMNTPGGNTLSAAEHTCAMISALARHIGQGYASMLEGKWERSKFMGCELGGKTLAIIGLGRIGREVASRMQSYGMKTVGYDPLVSPEEAATFGVEYLQLKNIWPIADFVTVHVPLIKPTRGMINASVFEVCKPSMKVINVARGGIIDEKDLLNALNAGKCGGAALDVFETEPPKEGSVSMELVKHPKTLCTPHLGASTTEAQLRVAKEIAEQFVDAVNGKPMVGLVNAPALSQLANPLYAPWVELAQKXXXXXXXXXXXXXXTLHL--DGDELKPATRLLNTALCFGLAK--AKGLDCNMISAVSLLKEKNIVVVNSPTP 4219
++KVLISD +D C+ +L++ ++V K LSK+EL A ++D +GLIVRSATKVT DV + AE+L+++GRAGTGVDN+D +A+ KG+LVMNTP GN+LSAAE TC MI LAR I Q ASM +GKWER KFMG EL GKTL I+GLGRIGREVA+RMQS+GMKT+GYDP++SPE +A+FGV+ L L+ IWP+ DF+TVH PL+ T G++N + F CK ++V+N ARGGI+DE LL AL +G+C GAALDVF EPP++ + LV H + PHLGAST EAQ R +EIA QFVD V GK + G+VNA AL+ +P PW+ LA+ LG+L + S T+ + G LK A L+ A+ GL K +K D N+++A L+KE + V S +P
Sbjct: 6 LRKVLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRA----LVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTGVVNAQALTSAFSPHTKPWIGLAEALGTLMRAWAGSPKGTIQVITQGTSLKNAGNCLSPAVIVGLLKEASKQADVNLVNAKLLVKEAGLNVTTSHSP 410 The following BLAST results are available for this feature:
BLAST of TCONS_00070842 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.