TCONS_00070811 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070811
Unique NameTCONS_00070811
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1232

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070811 ID=TCONS_00070811|Name=TCONS_00070811|organism=Clytia hemisphaerica|type=transcript|length=1232bp
TGACAACTAACATACCTGTTTGTATTGGGGTCATATCTTTCCACATCATT
CAACCGTACGTTACCATCGAAACCGCCAATAGCATACAATTTCCCATCCA
AGATTGCCACACCCACTCTACTCCTTTGTATAGCCATTGGTAAAACCGGT
GTCCATTTCCCTAAGATTGTATCATACTTTTCGACAGTGGATAACGATTC
CCCAGAAGACGTTAAACCACCAACAATATAAATCAAACCAGCCGCCTCGC
TACAACGTCGAGGTAAAGTGCGTtcactttttaaatgttttctgcGTTCA
GGCATTAACATGAAGTCTTTTGCTTCATCGATTAGATCTCTACACACAAT
ATTGCTACGAATAATCTCCTCAGATAACACTCGATCACTTAAATATTGAG
GTGACAACAGTGGTAAACGGACGTATTTTAACAGTTCTGGTAAATGTCCT
TTCCGTCCTTCACAATCTGTTTTCACCCAAGAAAGCACAGCTTCGAAAAT
TTGCTCCTCAGACCGAATATTCAAATCATCTTTCTTGATCAGTTCAGCCA
AATCATCAAACTGCAACTGCAAAAATTCATTACATTGTGAAACATCCAca
aaatttttgtcaagaaaAGAATTAGCAGCTTGTAGAAGTTCAGCAGCCGA
ATACATATCTGCTAAATGGCGGACAGTTAAACAATTCTCTGGATGTAATT
TCTTCATTAGGAAGCTTACACAGGCATCTTTAACACATGTTATTTGTAAC
AGCGAAGCAGCCGACAATAAATTTTGTACATTCTCAGTCCTCACAATAAG
GTTTTCACCGTAAATAAAATTGACAAGTTCAACAATACATTGAGCATCGA
GTTCTTGGATAGTCACTTCTTGTAAAGAGCTCTCTAGCATCTGATTAGTA
AACATAGCATTGAAATAAGGTGTAGCTGCTGCAAGCACAATTTTATGAGC
TTTGATAGACGTGCTACCAACAATCAATGTAACGTCACATAATGACTCCT
CTTGTCTCAACGAGGAGAGTGATTTCATCATTCCATTTAAAATGTCTGGA
CGTGAAGACAAACAGAAGACTTCTGATTCAAGTATATCATGTTGATGAAG
CCCCGGTCCATTGACAGATAATTGTTGCAATGGTTTCTCAACCTTTGGTA
TCGCAACCACACTTTCTTCATTCtcattttccattttattttttttcaat
ctatgACGGGAACAGATATTGTCTTGAAAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_58:479092..480392+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070811 ID=TCONS_00070811|Name=TCONS_00070811|organism=Clytia hemisphaerica|type=transcript|length=1301bp|location=Sequence derived from alignment at scaffold_58:479092..480392+ (Clytia hemisphaerica)
TGACAACTAACATACCTGTTTGTATTGGGGTCATATCTTTCCACATCATT
CAACCGTACGTTACCATCGAAACCGCCAATAGCATACAATTTCCCATCCA
AGATTGCCACACCCACTCTACTCCTTTGTATAGCCATTGGTAAAACCGGT
GTCCATTTCCCTAAGATTGTATCATACTTTTCGACAGTGGATAACGATTC
CCCAGAAGACGTTAAACCACCAACAATATAAATCAAACCAGCCGCCTCGC
TACAACGTCGAGGTAAAGTGCGTtcactttttaaatgttttctgcGTTCA
GGCATTAACATGAAGTCTTTTGCTTCATCGATTAGATCTCTACACACAAT
ATTGCTACGAATAATCTCCTCAGATAACACTCGATCACTTAAATATTGAG
GTGACAACAGTGGTAAACGGACGTATTTTAACAGTTCTGGTAAATGTCCT
TTCCGTCCTTCACAATCTGTTTTCACCCAAGAAAGCACAGCTTCGAAAAT
TTGCTCCTCAGACCGAATATTCAAATCATCTTTCTTGATCAGTTCAGCCA
AATCATCAAACTGCAACTGCAAAAATTCATTACATTGTGAAACATCCAca
aaatttttgtcaagaaaAGAATTAGCAGCTTGTAGAAGTTCAGCAGCCGA
ATACATATCTGCTAAATGGCGGACAGTTAAACAATTCTCTGGATGTAATT
TCTTCATTAGGAAGCTTACACAGGCATCTTTAACACATGTTATTTGTAAC
AGCGAAGCAGCCGACAATAAATTTTGTACATTCTCAGTCCTCACAATAAG
GTTTTCACCGTAAATAAAATTGACAAGTTCAACAATACATTGAGCATCGA
GTTCTTGGATAGTCACTTCTTGTAAAGAGCTCTCTAGCATCTGATTAGTA
AACATAGCATTGAAATAAGGTGTAGCTGCTGCAAGCACAATTTTATGAGC
TTTGATAGACGTGCTACCAACAATCAATGTAACGTCACATAATGACTCAT
CTTGTCTCAACGNATGAGCTTTGATAGACGTGCTACCAACAATCAATGTA
ACGTCACATAATGACTCCTCTTGTCTCAACGAGGAGAGTGATTTCATCAT
TCCATTTAAAATGTCTGGACGTGAAGACAAACAGAAGACTTCTGATTCAA
GTATATCATGTTGATGAAGCCCCGGTCCATTGACAGATAATTGTTGCAAT
GGTTTCTCAACCTTTGGTATCGCAACCACACTTTCTTCATTCtcattttc
cattttattttttttcaatctatgACGGGAACAGATATTGTCTTGAAAAA
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044053XLOC_044053Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070811-exon-scaffold_58-1491911889:479092..480079TCONS_00070811-exon-scaffold_58-1491911889:479092..480079Clytia hemisphaericaexon
TCONS_00070811-exon-scaffold_58-1510915933:479092..480079TCONS_00070811-exon-scaffold_58-1510915933:479092..480079Clytia hemisphaericaexon
TCONS_00070811-exon-scaffold_58-1575043694:479092..480079TCONS_00070811-exon-scaffold_58-1575043694:479092..480079Clytia hemisphaericaexon
TCONS_00070811-exon-scaffold_58-1491911889:480149..480392TCONS_00070811-exon-scaffold_58-1491911889:480149..480392Clytia hemisphaericaexon
TCONS_00070811-exon-scaffold_58-1510915933:480149..480392TCONS_00070811-exon-scaffold_58-1510915933:480149..480392Clytia hemisphaericaexon
TCONS_00070811-exon-scaffold_58-1575043694:480149..480392TCONS_00070811-exon-scaffold_58-1575043694:480149..480392Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:479092..480392 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.9828	12.8956	10.0004	7.60008	9.52304	9.41269	9.92769	8.21022	6.25731	5.76857	4.83687	4.30969	4.63023	3.39318	2.86166	4.00913	5.17703	6.16813	3.49007	3.62721	9.04474	8.44686	9.47796	9.12939	4.36223	6.30818	4.78736	2.64316	6.23629	4.50803
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000210BTB/POZ_dom
IPR006652Kelch_1
IPR011705BACK
IPR015915Kelch-typ_b-propeller
IPR011333SKP1/BTB/POZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00070811 vs. Swiss-Prot (Human)
Match: KLH18 (Kelch-like protein 18 OS=Homo sapiens GN=KLHL18 PE=1 SV=3)

HSP 1 Score: 346.28 bits (887), Expect = 6.883e-113
Identity = 179/353 (50.71%), Postives = 243/353 (68.84%), Query Frame = -1 
Query:    9 FCLSSRPDILNGMMKSLSSLRQEESLCDVTLIVGSTSIKAHKIVLAAATPYFNAMFTNQMLESSLQEVTIQELDAQCIVELVNFIYGENLIVRTENVQNLLSAASLLQITCVKDACVSFLMKKLHPENCLTVRHLADMYSAAELLQAANSFLDKNFVDVSQCNEFLQLQFDDLAELIKKDDLNIRSEEQIFEAVLSWVKTDCEGRKGHLPELLKYVRLPLLSPQYLSDRVLSEEIIRSNIVCRDLIDEAKDFMLMPERRKHLKSERTLPRRCSEAAGLIYIXXXXXXXXXXXXXXEKYDTILGKWTPVLPMAIQRSRVGVAILDGKLYAIGGFDGNVRLNDVERYDPNTNRYV 1067
            F +S  P    G+M+ +   R++  LCDVTL +G     AH+IVLAA+ PYF+AMFTN M+E    E+ +Q +D   +  L+NF Y  NL +  +NVQ+LL  AS LQ+  +KDAC +FL ++LHP+NCL VR  A+    A L  AANSF+ ++FV+VS   EFL L  +D+ EL+ +D+LN++SEEQ+FEA L+WV+ D E R  +LPELL  +RLPL  PQ+LSDRV  ++++R    CRDL+DEAKD+ LMPERR HL + RT PR C+  AGLIY VGGL S+G+SL+ VE +D I   W    PM   RSRVGVA+++G LYAIGG+DG +RL+ VE Y+P T+ + 
Sbjct:   15 FSVSELPSRGYGVMEEI---RRQGKLCDVTLKIGDHKFSAHRIVLAASIPYFHAMFTNDMMECKQDEIVMQGMDPSALEALINFAYNGNLAIDQQNVQSLLMGASFLQLQSIKDACCTFLRERLHPKNCLGVRQFAETMMCAVLYDAANSFIHQHFVEVSMSEEFLALPLEDVLELVSRDELNVKSEEQVFEAALAWVRYDREQRGPYLPELLSNIRLPLCRPQFLSDRVQQDDLVRCCHKCRDLVDEAKDYHLMPERRPHLPAFRTRPRCCTSIAGLIYAVGGLNSAGDSLNVVEVFDPIANCWERCRPMTTARSRVGVAVVNGLLYAIGGYDGQLRLSTVEAYNPETDTWT 364
The following BLAST results are available for this feature:
BLAST of TCONS_00070811 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KLH186.883e-11350.71Kelch-like protein 18 OS=Homo sapiens GN=KLHL18 PE... [more]
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