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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070802 ID=TCONS_00070802|Name=TCONS_00070802|organism=Clytia hemisphaerica|type=transcript|length=2033bpRun BLAST on NCBI protein sequence of TCONS_00070802-protein >TCONS_00070802-protein ID=TCONS_00070802-protein|Name=TCONS_00070802-protein|organism=Clytia hemisphaerica|type=polypeptide|length=505bp MRDAARIILMALSLCSFCTSTVYERCGKEFDVIGCFTQTTKAERFNKTLSRun BLAST on NCBI transcript from alignment at scaffold_58:461029..467900+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070802 ID=TCONS_00070802|Name=TCONS_00070802|organism=Clytia hemisphaerica|type=transcript|length=6872bp|location=Sequence derived from alignment at scaffold_58:461029..467900+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_58:461029..467900+ >TCONS_00070802 ID=TCONS_00070802|Name=TCONS_00070802|organism=Clytia hemisphaerica|type=CDS|length=10626bp|location=Sequence derived from alignment at scaffold_58:461029..467900+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00070802 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 124.02 bits (310), Expect = 6.954e-29 Identity = 69/212 (32.55%), Postives = 97/212 (45.75%), Query Frame = 3
Query: 495 MCDN-----GQKYCMGGPYE-QYIYKLNYTGSGIFTQWSSFGNCSKPCGGGIQYRTRECAS-----GGNDCVGSTREERECNMEKCXXXXXXXXXXKTCRWGNWTKYSSCSQSCGEGFQKRTRKCDGGPQVPGKEQCVAESEQIESCFVRDCPDVNHWGPWSSYTTCSKTCDEGKKSRKRVCIQANPPNKDKSKDTCHGDQMEYATCNLRLC 1097
+C+N G YC G + Q + N G + W+S+ CS CGGG + RTR C+ GG C GS + CN + CP W W+ + +CS++C G +R R CD P G C QI+ C CP WG W S++ CS +C G+K+RKR+C + P K C GD + CN++ C
Sbjct: 4669 LCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHG---------NWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLC---DHPVPVKGGRPCPGDTTQVTRCNVQAC 4868 HSP 2 Score: 121.324 bits (303), Expect = 5.442e-28 Identity = 65/194 (33.51%), Postives = 92/194 (47.42%), Query Frame = 3
Query: 573 GIFTQWSSFGNCSKPCGGGIQYRTREC-----ASGGNDCVGSTREERECNMEKCXXXXXXXXXXKTCRWGNWTKYSSCSQSCGEGFQKRTRKCDGGPQVPGKEQCVAESEQIESCFVRDCPDVNHWGPWSSYTTCSKTCDEGKKSRKRVCIQANPPNKDKSKDTCHGDQMEYATCNLRLCLMKLTCYHKYTPWS 1139
G F+QWS++ CS CG GIQ R+R C A+GG C GS E R C + CP W W+ + C++SCG G Q RTR C+ G C + +I C +R CP W W + TCS++C +G ++R R+C N P C G + + CN R C + + K+ W+
Sbjct: 4530 GGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGS---------WSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLC---NNPPPAFGGSYCDGAETQMQVCNERNCPI----HGKWATWA 4707 HSP 3 Score: 119.013 bits (297), Expect = 2.534e-27 Identity = 64/181 (35.36%), Postives = 89/181 (49.17%), Query Frame = 3
Query: 573 GIFTQWSSFGNCSKPCGGGIQYRTREC-----ASGGNDCVGSTREERECNMEKCXXXXXXXXXXKTCRWGNWTKYSSCSQSCGEGFQKRTRKC-DGGPQVPGKEQCVAESEQIESCFVRDCPDVNHWGPWSSYTTCSKTCDEGKKSRKRVCIQANPPNKDKSKDTCHGDQMEYATCNLRLC 1097
G ++ W +G CS+ CG G Q R R C A GG+ C G+ + + CN CP +W W +S+CS SCG G ++RTR C D PQ G+ +C Q + C CP +W PWS + TCS+TC+ G+ R R C NPP + + C G + CN +C
Sbjct: 4644 GAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHG---------KWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGR-KCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTC--DNPPPSNGGR-ACGGPDSQIQRCNTDMC 4811 HSP 4 Score: 82.4185 bits (202), Expect = 5.915e-16 Identity = 42/121 (34.71%), Postives = 58/121 (47.93%), Query Frame = 3
Query: 573 GIFTQWSSFGNCSKPCGGGIQYRTREC-----ASGGNDCVGSTREERECNMEKCXXXXXXXXXXKTCRWGNWTKYSSCSQSCGEGFQKRTRKCDGGPQVPGKEQCVAESEQIESCFVRDCP 920
G ++ WS +G CS+ C GG R R C ++GG C G + + CN + CP WG+W +S CS SCG G + R R CD V G C ++ Q+ C V+ CP
Sbjct: 4758 GNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGS---------WGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 The following BLAST results are available for this feature:
BLAST of TCONS_00070802 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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