TCONS_00070802-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00070802-protein
Unique NameTCONS_00070802-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length505

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00070802-protein ID=TCONS_00070802-protein|Name=TCONS_00070802-protein|organism=Clytia hemisphaerica|type=polypeptide|length=505bp
MRDAARIILMALSLCSFCTSTVYERCGKEFDVIGCFTQTTKAERFNKTLS
HVDWWRYDHKSFEMLLCKCSAKAREKGYIAFTFHDYVECHGTDDYKEYTD
LITNEDRASDECINEEYEMCDNGQKYCMGGPYEQYIYKLNYTGSGIFTQW
SSFGNCSKPCGGGIQYRTRECASGGNDCVGSTREERECNMEKCPPPPLTP
IPPKTCRWGNWTKYSSCSQSCGEGFQKRTRKCDGGPQVPGKEQCVAESEQ
IESCFVRDCPDVNHWGPWSSYTTCSKTCDEGKKSRKRVCIQANPPNKDKS
KDTCHGDQMEYATCNLRLCLMKLTCYHKYTPWSLDESGNPEALSYHKIHC
ADWHVLNRVRLERNMFKNRYRYYYRCCHSQLPCDDSQTKNKPTLNNGTMA
SLNQQPVHCGKFGVSYLKLNTIMDKKQYLSYTFECCKPRNELAGTICYKG
NTGFKKEKALDEHSISCTKDDRYFIANFNLKINHTQDSVRYDYECCRIDP
TVKNF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044051XLOC_044051Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00070802TCONS_00070802Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 147..194
e-value: 7.7E-11
score: 52.0
coord: 265..320
e-value: 2.8E-10
score: 50.1
coord: 208..260
e-value: 8.4E-11
score: 51.9
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 141..194
e-value: 2.2E-12
score: 46.7
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 149..193
e-value: 1.2E-8
score: 35.0
coord: 266..319
e-value: 3.0E-6
score: 27.2
coord: 209..259
e-value: 6.8E-8
score: 32.5
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 263..319
e-value: 1.6E-10
score: 40.6
coord: 204..259
e-value: 4.7E-12
score: 45.5
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 205..260
score: 12.028
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 144..194
score: 12.68
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 262..320
score: 11.265
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 145..190
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 203..259
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 264..319

Blast
[Close]
BLAST of TCONS_00070802-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.848e-30
Identity = 69/212 (32.55%), Postives = 97/212 (45.75%), Query Frame = 0 
Query:  119 MCDN-----GQKYCMGGPYE-QYIYKLNYTGSGIFTQWSSFGNCSKPCGGGIQYRTRECAS-----GGNDCVGSTREERECNMEKCPPPPLTPIPPKTCRWGNWTKYSSCSQSCGEGFQKRTRKCDGGPQVPGKEQCVAESEQIESCFVRDCPDVNHWGPWSSYTTCSKTCDEGKKSRKRVCIQANPPNKDKSKDTCHGDQMEYATCNLRLC 319
            +C+N     G  YC G   + Q   + N    G +  W+S+  CS  CGGG + RTR C+      GG  C GS  +   CN + CP             W  W+ + +CS++C  G  +R R CD  P   G   C     QI+ C    CP    WG W S++ CS +C  G+K+RKR+C   + P   K    C GD  +   CN++ C
Sbjct: 4669 LCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCP---------THGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLC---DHPVPVKGGRPCPGDTTQVTRCNVQAC 4868

HSP 2 Score: 122.865 bits (307), Expect = 2.390e-29
Identity = 65/194 (33.51%), Postives = 92/194 (47.42%), Query Frame = 0 
Query:  145 GIFTQWSSFGNCSKPCGGGIQYRTREC-----ASGGNDCVGSTREERECNMEKCPPPPLTPIPPKTCRWGNWTKYSSCSQSCGEGFQKRTRKCDGGPQVPGKEQCVAESEQIESCFVRDCPDVNHWGPWSSYTTCSKTCDEGKKSRKRVCIQANPPNKDKSKDTCHGDQMEYATCNLRLCLMKLTCYHKYTPWS 333
            G F+QWS++  CS  CG GIQ R+R C     A+GG  C GS  E R C  + CP             W  W+ +  C++SCG G Q RTR C+      G   C   + +I  C +R CP    W  W  + TCS++C +G ++R R+C   N P        C G + +   CN R C +    + K+  W+
Sbjct: 4530 GGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCP---------VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLC---NNPPPAFGGSYCDGAETQMQVCNERNCPI----HGKWATWA 4707

HSP 3 Score: 120.553 bits (301), Expect = 1.549e-28
Identity = 64/181 (35.36%), Postives = 89/181 (49.17%), Query Frame = 0 
Query:  145 GIFTQWSSFGNCSKPCGGGIQYRTREC-----ASGGNDCVGSTREERECNMEKCPPPPLTPIPPKTCRWGNWTKYSSCSQSCGEGFQKRTRKC-DGGPQVPGKEQCVAESEQIESCFVRDCPDVNHWGPWSSYTTCSKTCDEGKKSRKRVCIQANPPNKDKSKDTCHGDQMEYATCNLRLC 319
            G ++ W  +G CS+ CG G Q R R C     A GG+ C G+  + + CN   CP            +W  W  +S+CS SCG G ++RTR C D  PQ  G+ +C     Q + C    CP   +W PWS + TCS+TC+ G+  R R C   NPP  +  +  C G   +   CN  +C
Sbjct: 4644 GAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCP---------IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGR-KCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTC--DNPPPSNGGR-ACGGPDSQIQRCNTDMC 4811

HSP 4 Score: 84.3445 bits (207), Expect = 5.715e-17
Identity = 42/121 (34.71%), Postives = 58/121 (47.93%), Query Frame = 0 
Query:  145 GIFTQWSSFGNCSKPCGGGIQYRTREC-----ASGGNDCVGSTREERECNMEKCPPPPLTPIPPKTCRWGNWTKYSSCSQSCGEGFQKRTRKCDGGPQVPGKEQCVAESEQIESCFVRDCP 260
            G ++ WS +G CS+ C GG   R R C     ++GG  C G   + + CN + CP             WG+W  +S CS SCG G + R R CD    V G   C  ++ Q+  C V+ CP
Sbjct: 4758 GNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP---------VDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869
The following BLAST results are available for this feature:
BLAST of TCONS_00070802-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN12.848e-3032.55Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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