TCONS_00070800 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070800
Unique NameTCONS_00070800
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2240

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070800 ID=TCONS_00070800|Name=TCONS_00070800|organism=Clytia hemisphaerica|type=transcript|length=2240bp
GAAGCCAACTCCTTGCAGCAAGTCATGTGGAGGTGGAACAACAACAAGGT
CAAGAAAATGCGACAACCCAGCTCCTGCTCATGGTGGGAAAGATTGTGAA
GGCTCCGATACCGAAACGAGAGAATGCAACGCTAAACAATGCGCAGTTGA
TGGTGGATTCGGAGAATGGTCAGGGTTTGGAGAATGCAGTGTAACATGTG
GTGTCGGTACCAAAACACGACGACGAGAATGTGATCAACCAAAACCTTCG
GGTGGTGGAAAGACATGTCAAGGAGAAACCACACAAACGGAAAATTGTGA
TACCCAAGTCAATTGTCCAGTGGATGGGAAGTGGGCAGAATGGTCAGAAT
GGGAATCGTGTGATAAATGTTGTGGTGGAGGGAGTCAACGAAGATACCGA
ACTTGTGATAATCCACCACCAGGACCCAATGGAAAGAAATGCCAAGGAGA
AAGAATCGATTCACGAAAATGCAACATTGACCCTTGTCGAGATCAGGATT
GCTTTTTTAAATACACCCCATTCACGCCAATCGACAAAGACGGAAAACCA
ATATTTTTGGACCACCACCAAATCAAATGCCCGGCCAGTCACGTCTTGAA
CTACATCAGACTCCAAAAGAACGAACAAGAAACCATGATCAGCTATGGAT
ATCGATGCTGCAAGACACAAGCTTGTGCAAACTTACCTAAAACAAACGAC
GAAACTTATAATGGAGGAGGTTATGGAAAAGTCTTCAATTTGGATCACCA
AACAGTCGCTTGCAAAAGTGACGGCTTGAGTTCCCTCAAACTTGACCGAG
ATATGACAAGATGGAACTACAAATATGATTGTTGCAAACTTGGCAACAAA
AATGCAGAGCTGGATTGTTACAATGCAAACAGTCAATTCTTAAGTGACAT
GGGTGGCAGTGTGTTATCTTTGTTGAACCAAGAAATTTCCTGCAAGTGCG
ATGATTATTATATCACTGATTTCAAAATGAATCGAAATTACAATGGAAAT
GAAGATCAGATCAGATATGATTTCCAATGTTGTAAAATTACTTCAGCGCC
ATGCAACACCGAAGAATGCCAAGTAGTTTCTAATGGTAATTGGGGCGAAT
GGACCTATTGGAGTGACTGTAGTGTCACATGTGCAAATGGAGTTCACAAA
CGAACAAGAAAATGTGACAATCCTCCCCGTCTTGGTAGTGGAAATGATTG
TGAAGGAGAAGCTGTCGAAACCAAGCCATGTAACACTGGCCGAAAGTGTC
CTGTGGATGGGAAGTGGGCAGAATGGTCAGAATGGGAATCGTGTGATAAA
TGTTGTGGTGGGGGAAGTCAACGAAGATACCGAACTTGTGATAATCCACC
ACCAGGACCCAATGGAAAGAAATGTCAAGGAGAGAGAATCGATTCACGAA
AATGCAATACACATTCCTGCCCAGATCCAAAGAATTGCTTTTTCAAGTAC
ACTCAATACACACCACTTGACAAAGATGGAAAACCAATATTTTTGGATCA
GCATCAAATCAAATGCCCGGCCAGTCACGTCTTGAACTACATCAGACTCC
AAAAGAACGAACAAGAAACCATGATCAGCTATGGATATCGATGCTGCAAG
ACACAAGCTTGCTTAAACTTACCTAAAACAAATGATGAAACTTATAATGG
AGGAGGTTATGGAAAAGTCTTCAATTTGGATCACCAAACAGTCGCTTGCA
AAAACGAAGGCTTGAATTCCCTCAAACTTGACCGAGATATGACAAGATGG
AACTACAAATATGATTGTTGCAAACTTGGCAACCAAAAGGCAGAGCTGGA
TTGTTACAATGCAAACAGTCAATTCTTAAGTGACATGGGCGGCAGTGTGT
TATCTTTGTTGAACCAAGAAATTTCCTGCAAGTGCGATGATTATTATATC
ACTGATTTCAAAATGAATCGAAATTACAATGGAAATGAGGATCAAATCAG
ATATGATTTCCAATGttgtaaaatcaaaaaataaattgagGGACTTTATC
CTATTTGGGTATAAGAATATTTGAAAGAGCATTTTAGTAGATGAGATGGG
TTATAGATAAGAATTTTATTGCTTTCAAATAATATTATGAAAATTATTGG
CTTTGAATAAAGATTTGTTTATTGAAAATGTTAGTTGTGCACTTTATTAT
TCAATTCTCAATACTTTAATTGCAATAGATTAAAACTTCTCAGAGCACAG
AGGACGCCATTTCCGGCGGTCAATTTACTCAAGTTACGAA
Run BLAST on NCBI

transcript from alignment at scaffold_58:448512..460510+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070800 ID=TCONS_00070800|Name=TCONS_00070800|organism=Clytia hemisphaerica|type=transcript|length=11999bp|location=Sequence derived from alignment at scaffold_58:448512..460510+ (Clytia hemisphaerica)
GAAGCCAACTCCTTGCAGCAAGTCATGTGGAGGTGGAACAACAACAAGGT CAAGAAAATGCGACAACCCAGCTCCTGCTAATGGAGGGTGGAATTGCGAA GGCTCTGGTACCGAAACCCAAAAATGCAACAGTAATGAATGCCCAAAGCA ACCAGGTATATTATCTAAGTTCGGCTGTTATATTTTTACTTAAACTGTTT ATTAGATGTGATTGTATTTTGTAGAATATCAATGAAGCTTCATTCAACTT TATCACGTCCTACTTgctaatttattttgaaaatatcgcATCCATAGGTA CCGAACCGAAAAATTGTCTGATAAAATACCATTAgttaaattattgaaaa tttatcagCAANTCACGTCTTACTTGCTAATTTATTCTGAAAATATCGCA TCCATAGGTACCAAACCGAAAAACTGTCTGATAAAATACCATTAgttaaa ttattgaaaatttatcaacaaagtttttaattttttctagtaAACGGTGG TTGGGGAGAATGGACGAAACCAACTCCTTGCAGCAAGTCATGTGGAGGCG GTAAAACTACAAGGTCAAGAAAATGCGACAACCCAGCTCCTGCTCATGGT GGGAAAGATTGTGAAGGCTCCGATACCGAAACGAGAGAATGCAACACTTT TGAATGCCCAAAGAAACCAGGTATATTTTTCTTGCTAAGAATGATTTTGT AAAACGCACGTTCGTAAACTCGACTATACCTATTTGGAACAATCCCCCTA ATGcaataaaacaaaccaaatgtctccttaatttCAAATCAGTTTTGAAA CGTCACATTTTCTGTCAGAACATGTTGTTACTAGTTCTTGTCctgttctt tttattcttgCTTAATTGCCGTATTActtaataaacgccccgggcgttaT GATCAAGAATTTGTAAAtatagaaacaacaaaatagcaattcccaaaatg tgatggagcccacTTTTCGACAGTAAACATTATTTCTTATCACCAGAtca agaaatgtcccaaaaaaagagGTTTTCCAGGAATTCCTCGCGATTTTCTC ATTAGCTTTAATTCtaaggtttttttaattttgaatttgaaatgtgGTTT TCTATTGATTAGGGCCATAAAAATAtcacttatttaaaaaaaaaaaatac tgtgTAATATTATCGGCTAATTATTGATTGATGTCAGttaattctttttc tttatccTCTCTTAAGTAAATCAATACTTTAATTATTGAAAGTAGAAAAC AAATTCCTTTTCTTTTCTAGTTAACGGTGGTTGGGGAGAATGGACGAAGC CAACTCCTTGCAGCAAGTCATGTGGAGGTGGAACAACAACAAGGTCAAGA AAATGTGACAACCCAGCTCCTGCTAATGGAGGGTGGAATTGCGAAGGCTC TAATACCGAAACCCAAAAATGCAACACTAAGGAATGCCCAAAGCAACCAG GTATATTATCTAAGTTCGGCTGTTATATTTTTACTCAAACTGTTTGATTA TTAGATGTGATTGTATTTTGTAGAATATCAATGAAGCTTCATTCAACTTA ATCACGTCTTACTTGCTAATTTATTCTGAAAATATCGCATCCATAGGTAC CAAACCGAAAAATTGCCTGATAAAATACTATTATTTAAATGAGtgaaaat ttatcaacaaagtttttaattttttttagtaaacgGTGGTTGGGGAGAAN tgtattttaactttttacttACTTGACTTgtgaaaatgaatttatttttt ggacATCTATTCTCCCTCTTTCTAGTTAACGGTGGTTGGGGAGAATGGAC GAAACCAACTCTTTGCAGCAAGTCATGTGGAGGCGGTAAAACTACAAGGT CAAGAAAATGCGACAACCCAGCTCCTGCTCATGGTGAGAAAGATTGTGAA GGCTCCGATACCGAAACGAGAGAATGCAACGCTAAACAATGCGCAGGTAG CTAGAGTTTATTATCGTCGGTTTTATCTTTGTTCGAGGGGACATTTAAGA AAAAGATGTTCTCGTTTATATTACAGGGGAAGAAAACCAAGTCTCTGAGA TAAAATATCTTGCCCCACTCCATCTCAGTGATCATAGTGCcctctttttt aaattctatgGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNGTTACGATACCAACTTTCATATCCAGGGTACAGTAATTTCCAATGAC TCTTTGAAAGTTTCTTTCTCTTCCAACCATAGGTTTGATCTTCTACTTGT TGCAACACACACCGAGCAAAGAGAACATCAACTACGTGTTGAACTTCATA GCTGCTGTAccaaaacatgaatatcttgaTGAAGTTCTGGATATGTTGGA CAACGCAACCAGGACTGGTGGACATGAACTTGTAACCACGATTTCAGGta ttagaattattttttttatttttcgctcGCGTCACAGCTATACTTGTCTT CGCTATTATGGTTTAGCTTCACATGATCTGACCGGTAGTTATGACCCTTC TAAGCCACGCAAACGCTATCTTTTTTATGCTCTGTAGTAACTTGCTGATT TGTTCCTTCTTTCACAGAATCAGGCAGTAACATTTTATACAGATGGTTGG TGCACGAAGTTTCCAACAAAATTCGTATCAAAATCCTCAGCTTGATAGTC TACCtcctaaaaaaaggaaaaatttcgGATGCTGGCAAAAAGAAGCTTTC TTTGGACGGGGATGGTTTATTTGACGGTATCGGTGAACTTCTATGCAAAC AAGACATCGATCGTGACGTCATTGTGCATCTACTCAAGTTAGGGATATCG GTTGATCGGACCAGTGATTTGAAATCCGATATCTATACCGATTTTGGTAA AGTATTGACAGTGTTCCATATCGTACAGTTTCATCCAAGACCTGTCAAAC TGGAAGTTGCAATCAAAGTGAGTTTTCCCTTAATCTGTATCTTCATTTGA ATGTTTAGGTTTTAAAAGGTTAAGTTCCTTGTAAAGCGAGGAATGATTAA TCGGGTCTGATTACGCGTAGATTTCCGCCTCATTCTCTTTGCTTTTTGAG CTACAACACAAATTTTAATCGCGTTCTTCAATGTGCGTTTTTCCATCTTC GTTTCATCACAATGTATATAGATTCTTTTTAAAACGAGGATTGATCGGGT ATGAATTCTCTCTAGGATTTTGACAACAACATGAAGTTTTACACCACGTG AATAATCTTGAAATTAACCACAAGTTTTGTACCTAACCGCAAGTTTTGTA CCTAACCGCAAGTTTTGTACCTAACCGCAAATTGTGTACTTGACCTTACA TATTTATTGCTTTACAGGTTCGAAATTCGCTCAAACTATCGGATATCAGT TCAGTGCGATGTGCGAACGAACCTGGTTGGTACGAACCGATCTGGCGATT AATTGTATCTGAAAACACACAACCCGAAGATCTTGAGGATGTGATGGAGG CAGAACTGGTGCACGTGGTGATTGAGATAATCCATATTGTGATGTGGACT GGAATCATAGGATCTGATATCGCAGCATGGACTGTAAGTGGCACTTTTTG GACTCCTCTCTAGAATGAGGggtataataataaaaatcatGAACGAAACT TTATCTAGATAAATAAGTTTCAATTTATCGACTTAGATTGAAAGTTAATC ATGGCTTGGATCACAAGATCAACAAAATCTTGTGATTGATCCAAGCTACG ATAAATTTCCAGAGTAACTCCCTATACTATCGGGGCATTAAGCAGTGGAA TAGTTTGCCTTCTAAAGAGTCAACTCATCCTCAGTGGAAGAATTTAAAGA GACCCTTAGTGTNTAAAGTAGTCAACTCATCCTCAGTGGAAGAATTTAAA GAGACCCTTAGTGTGGCCTGGAAAGCTAAAAAGTTTGAATATGATTGAAA GTGTCACTATTATTGCATACCTGTCTATAAACAATGTAAATAATTAACCc aaaatgtatgagcgattcatagaggcccatgtgtccgcacggtggcctgc gaatttgtaaaacaatattatatttattacatacTTGTGAGCAGAGTCTT TTGGtgagaaaattatttattgAAATCTTAAACCTTCCCCAATCATAAGT CAGGTTGTATAAGGAGCACGTGTTAGTGGATGTCAGTGGCCTACGAATCA TTAGGTGTGTATCATAATAGGCGTGTTCAGTTTGCTGGTCATTGCCTTCG AGCGTCCACAGATAGCATCTCCTCTCTCTTACTCTGGAAACCCAAGCGGC TGGTTCAAAGATCGAGAAAGTTAACTTNCACAGAAGTCATCTCCTCTCTC TTACTCTGGAAACCCAAGCGGCTGGTTCAAAGATCGAGAAAGTTAACTTT TACTGACGCAGTTAGCAGGGACACTGGGCTTCTTTATAGTGACCTGGAGA CTGCCATGCGCGACTGCGATTCTTGGCGCCAGAGGGTGGAATCCATCATC TCGACCGCGgtcgaaagatgatgatgatgatgatgacgaaTCATTAGAAT GAAATGAACATTTTGGTTAAGTGTGTCTTCCTTTTCGGTGTAACTATATG CTTCTGAAAAAGTTAATCATCATCTTCCCATATTTCAAACCATCTTAATT TGTACACCACCACTGAACAATCAAGCTTCTGTAATTAGTTTTGGGTGTAA GCATGGACAAGAGGGATGCGGGTTTCTTGCGAGAGACTTGAGTATTATTC AGCTACTATTTATAACCTACTACAGTTGATGGTGGATTCGGAGAATGGTC AGGGTTTGGAGAATGCAGTGTAACATGTGGTGTCGGTACCAAAACACGAC GACGAGAATGTGATCAACCAAAACCTTCGGGTGGTGGAAAGACATGTCAA GGAGAAACCACACAAACGGAAAATTGTGATACCCAAGTCAATTGTCCAGG TAACATTCATacgcgttttttttaagaaactagttttaccaagcagcctc aatgtttcttaagaaatcggccttgagccttaaatgtttcttccatgttt ctaaactttgtgaCATAATCAGTCTATTTTTCATGCAaggaaaaaacatt tgttttgattggaaggttcttaaaaaaaatgttattttctcattctcagc ctcagcatgtttcttaaatgtttcttagtttttaggcattctgagcctca tgtttcttaaaagtgtgtttcttaaaaaaagacgtgtatgtAACATAACA TTCATAAGTATCCTTCCATACAGAAATTATTGGCAAATTTCGGGATCAAT GTCGACTCTAGCCAATAGAATAGCTGAATTTCCTTTCGGAACTGTGTGGA GCAAAAGGAAGGGCAGTTTCATTCATTGTATTGCTTTTCGGAAAGTTTTC CTACACGTTGAATATTGATCATATGGCAAATTGATCCTAGCTTATTTTAC CTTGTATGACTCGGACATCTGGATCTGGTTCAATATTATAGAATCAATAT CTGCATAAATAAAGATGCTTAACGCTGCCAGAACGTGCTCACACGTCATT GTCCCttcatgaaaaagaaataaaaatacttcttaatacttaaaactttc ttctgTTTGGTGGATGggaaatctctttttaaatGGATGAGAGTTTAAGA GGAGCGTGAAAAGTGAGGAATCCAAGTATTAAGTGAGAACAAATTTTGCA TTGCTAAAATAATTCTTCTGTTTAGTGGATGGGAAGTGGGCAGAATGGTC AGAATGGGAATCGTGTGATAAATGTTGTGGTGGAGGGAGTCAACGAAGAT ACCGAACTTGTGATAATCCACCACCAGGACCCAATGGAAAGAAATGCCAA GGAGAAAGAATCGATTCACGAAAATGCAACATTGACCCTTGTCGAGGTAT CCCTAGACATTTTATTATAAGTGTAGGCAGATTGTTTAACTTATTTTAAC GGTTTGAATCTGccatatatatttttattactttaatgACTTCTCACCAA AGCCACATTTAATATAGTTTTAGTTTGTGATGAAACTCATTTACTCATTT CAGATCAGGATTGCTTTTTTAAATACACCCCATTCACGCCAATCGACAAA GACGGAAAACCAATATTTTTGGACCACCACCAAATCAAATGCCCGGCCAG TCACGTCTTGAACTACATCAGACTCCAAAAGAACGAACAAGAAACCATGA TCAGCTATGGATATCGATGCTGCAAGACACAAGCTTGTGCAAACTTACCT AAAACAAACGACGAAACTTATAATGGAGGAGGTTATGGAAAAGTCTTCAA TTTGGATCACCAAACAGTCGCTTGCAAAAGTGACGGCTTGAGTTCCCTCA AACTTGACCGAGATATGACAAGATGGAACTACAAATATGATTGTTGCAAA CTTGGCAACAAAAATGCAGAACTGGATTGTTACAATGCAAACAGTCAATT CTTAAGTGACATGGGCGGCAGTGTGTTATCTTTGTTGAACCAAGAAATTT CCTGCAAATGTGATGATTATTATATCACTGATTTCAAGATGAATCGAAAT TACAATGGAAATGAAAATCAGATCAGATATGATTTCCAATGTTGTAAAAT TACTTCAGCACCATGCAACACCAAAGAATGCCAAGTAGTTGGTAAGAATC AACCACCTTTCTTTCTTTACGCTCGTTTCTCCTTCTACCATCCTCTTCCT GCAATTGATCCCTCCTCTCCCACATCAATCTCAACCTGCTCTTTCCCTCC TTCTCATCCCTCTCACTCTATCTTCGTTCAATTCCTCCCTCCTCCTTATT ACGAACTACCTGCCCTCCTCACTTTTTCCCTTCCTCTCTCCGTTTCCTCT GTTCCGTTCCGCATTATCCCTCCTCATTCTAATTTATACTATTTTTCCAC CAAGAAATCCTTCCTCAATCGAATATTCCTTCAGCCAGCTCTCCactgtt ttttcttttctaggTAATGGTAATTGGGGTGAATGGACCTATTGGAGTGA CTGTAGTGCCACATGTGGAAATGGAGTTCACAAACGAACAAGAAAATGTG ACAATCCTCCCGCTGTTGGTGGTGGAAAAGATTGTCAAGGAGAAGCCGTC GAAACCAAACCATGTAACACTGGCCAAAAGTGTCCTGGTAAGAGAGTTTT TGCCTTAAGATTTAACTTTTTTCACCGTGAAAATCAATGATTCCTAACAT CCTCGTTTAACATATATTAAACGTCACTCTTTGAATGTGTCCACAAATTT TTGGTGTCCTTTTTTAAAGAGTTTAACGATGCTGTTTTATATTGTAGCTT TTTACATAATGTCAAATAAGcccattttctttttaaatggaTGAGAGTTT TAAGAGGTGCGTGAAAAGTGAGGAATCCAAGTATTGAGTGAAAACATATT TTGCATTGCTAGAATAATTTTTCTGTTTAGTGGATGGGAAGTGGGCAGAA TGGTCAGAATGGGAATCGTGTGATAAATGTTGTGGTGGAGGGAGTCAACG AAGATACCGAACTTGTGATAATCCACCACCAGGACCCAATGGAAAGAAAT GTCAAGGAGAGAGGATCGATTCACGAAAATGCAATACACATTCCTGTCCA GGTTCGAAAtctcaatttgttcttttgttgctctccattttaggtattgc aaaaaaaaattgtatcctATGGGGAAATCATTTTGGGGAAAGGTAGTGGA TTTTTTTtcctgtaattttttttctttttttctcttcttccttggttttt tttattcttcattttttagacCACTCTGGATTTTTGACCTCATTTTACTG TCTAATTTGGACTTAAACTCGAACCATACacctgaattttttattttcca acgCACCCTGAACGTCGAACCTCCCAAACATTGAGGGtttaaagttcttt ttttcttgaaatgaGCCAAGTTATAACAAGATTCTACTTTTTCTCAAAGG CAAAGTATATCTCTTTTACAGATCCAAAGAATTGCTTTTTCAAGTACACT CAATACACACCTCTTGACAAAGATGGAAAACCAATATTTTTGGACCACCA TCAAATCAAATGCCCGGCCAGTCACGTCTTGAACTACATCAGACTCCAAA AGAACGAACAAGAAACCATGATCAGCTATGGATATCGATGCTGCAAGACA CAAGCTTGTGCAAACTTACCTAAAACAAATGATGAAACTTATAATGGAGG AGGTTATGGAAAAGTCTTCAATTTGGATCACCAAACAGTCGCTTGCAAAA ACGAAGGTTTGAATTCTCTCAAATTGGACCGAGATATGACAAGATGGAAC TACAAATATGGTTGTTGCAAACTTGGTAACCAAAAGGCAGAGCTGGATTG TTACAATGCAAACAGTCAATTCTTAAGTGACATGGGTGGCAGTGTGTTAT CTTTGTTGAACCAAGAAATTTCCTGCAAGTGCGATGATTATTATATCACT GATTTCAAAATGAATCGAAATTACAATGGAAATGAAGATCAGATCAGATA TGATTTCCAATGTTGTAAAATTACTTCAGCGCCATGCAACACCGAAGAAT GCCAAGTAGTTTGTAAGAATCATTCTTCCCTCTTCACCTTCCGCCCTTAT TTATATTTCCACCTCTACGATCagtcaggaagaaaagacacttttttatt ctgctactggcagtttcatgccacttttATGACAATGTTCAGGCACcaac taaaaaatatttccagCTCTATGATCATTCCTTCTCTCTCCCTCCTCCCT ATTCTCTCTTTCTTCCCTCAGTCCTTCTTCCTTCCACCATCCTCCCTTAT TCATTCCTTCTCTTTTCGTCCCTTCTCTTTTACATTCTCTCTCCTCTTTC CATGTTTTTCTCACTAGCTAATGGTAATTGGGGCGAATGGACCTATTGGA GTGACTGTAGTGTCACATGTGCAAATGGAGTTCACAAACGAACAAGAAAA TGTGACAATCCTCCCCGTCTTGGTAGTGGAAATGATTGTGAAGGAGAAGC TGTCGAAACCAAGCCATGTAACACTGGCCGAAAGTGTCCTGGTAAGAGAG TTTTCCttttaaattaaactttttcacCGTGAAAATCAATGATTCCTTAC ATCCTCGTTTAACATTGATATTAAACGTCACTATTTGAATGTGTCCTCAA ATTTTTGCTGTCCTTTTTTAAAGAGTTTAACGATGCCGTTTTATTGAAGT CCATTAGTGCCATTTAGATTTTcctttaattttttaacgacgaaactgaa aataaattgttaCTTTGTTTCGTCGTCGAAAAAAATCTACAACGAAACTA AAGGAAattgaaaatggtggcccttGATGGTTGCAAAATGGAAATATCAT TGATTCTGGTGGATTCTGAAGATGGATTTGAATgctctggtgaatgcaat gctGGTGAAGATGGTTCTTATGAATAAAATAAGATGCTGGCGATAATGAA CCAGAATAAGGATGTGATGGTGGATATTGTTGGAATCACTGCTATCAATA GTgcaaatgatgaaatcaatggtgcaaatgatggaatcaatggttggTTC CATCTCCCGCACAATGGATTCCATCATCTCATCGTGCTACTGGTTTGATT CCATTATCGGTTCCATTGATTCTATCacttgcaccattgattccatcatt tgcaccattgatttcatcatttgcACTATTGATTAGTTCCAATGATTCCA TTGACACCGGTGATTCCGACAATATCCACCATCAGATCCTTTTTCTGGTT CATTATTGCCAGCATCTTATTTTATTCACAAGAACCATCTTCGCCagcat tgcattcaccagaacatTCAAATCCATCTTCAGAATTCACCAGAATTAAC AATATTTCCCTTTTGCAACCatcagggccaccattttcaaagatttttta atttcgttgttgattttttcgacgacgaaacgaagtaacaatttattttc agttttgtcGTCAGTTTTTTCGACGACGAAATGAAgtaacaatttatttt caagttcgtcgtcaattttttagtttcgtcATTAAAAGATTAAAGGAGAA TCTAAATGGCACTAATGGGCTTCCGTATGTTTTATACTGTAGCTTTTTAC ATAATGTCAAATAAAgccaatttctttttaaattgacGAGAGTTTAAGAG GAGCGTGAAAAGTGAGGAATCCAAGTATTAAGTGAAAACATATGCATTGC TAGAATAATTTTTCTGTTTAGTGGATGGGAAGTGGGCAGAATGGTCAGAA TGGGAATCGTGTGATAAATGTTGTGGTGGGGGAAGTCAACGAAGATACCG AACTTGTGATAATCCACCACCAGGACCCAATGGAAAGAAATGTCAAGGAG AGAGAATCGATTCACGAAAATGCAATACACATTCCTGCCCAGGTTCGAga tatcaatgttttcttttggaGCTTTCCGTTATGGGCTACTCCAGAAAAGA ATTTGTACTTCATTGGTTGAGGAGGTCATTTTTGGGAAAGGtgacccctg gattttttccactttttcagGACCccttagtttttattttattttttaga ccaccctggatttttacctCATTCTACTGAGAATACCCTGGATTTACACT CGAACCATACACCTggatttttattcttttcagaTCCCACAGGACGTCGA ACCTTCCCAACATAGGGGTTTTTGagttctttctttctttaattAAATGA TAAGCCCAGTTTTATCTTTCGAATTCAAGGTATAacaagattttactttt tttcaaacgCAAAATATGTTATCTCTTTTACAGATCCAAAGAATTGCTTT TTCAAGTACACTCAATACACACCACTTGACAAAGATGGAAAACCAATATT TTTGGATCAGCATCAAATCAAATGCCCGGCCAGTCACGTCTTGAACTACA TCAGACTCCAAAAGAACGAACAAGAAACCATGATCAGCTATGGATATCGA TGCTGCAAGACACAAGCTTGCTTAAACTTACCTAAAACAAATGATGAAAC TTATAATGGAGGAGGTTATGGAAAAGTCTTCAATTTGGATCACCAAACAG TCGCTTGCAAAAACGAAGGCTTGAATTCCCTCAAACTTGACCGAGATATG ACAAGATGGAACTACAAATATGATTGTTGCAAACTTGGCAACCAAAAGGC AGAGCTGGATTGTTACAATGCAAACAGTCAATTCTTAAGTGACATGGGCG GCAGTGTGTTATCTTTGTTGAACCAAGAAATTTCCTGCAAGTGCGATGAT TATTATATCACTGATTTCAAAATGAATCGAAATTACAATGGAAATGAGGA TCAAATCAGATATGATTTCCAATGttgtaaaatcaaaaaataaattgagG GACTTTATCCTATTTGGGTATAAGAATATTTGAAAGAGCATTTTAGTAGA TGAGATGGGTTATAGATAAGAATTTTATTGCTTTCAAATAATATTATGAA AATTATTGGCTTTGAATAAAGATTTGTTTATTGAAAATGTTAGTTGTGCA CTTTATTATTCAATTCTCAATACTTTAATTGCAATAGATTAAAACTTCTC AGAGCACAGAGGACGCCATTTCCGGCGGTCAATTTACTCAAGTTACGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044050XLOC_044050Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070800-exon-scaffold_58-1491911889:448512..448559TCONS_00070800-exon-scaffold_58-1491911889:448512..448559Clytia hemisphaericaexon
TCONS_00070800-exon-scaffold_58-1510915933:448512..448559TCONS_00070800-exon-scaffold_58-1510915933:448512..448559Clytia hemisphaericaexon
TCONS_00070800-exon-scaffold_58-1575043694:448512..448559TCONS_00070800-exon-scaffold_58-1575043694:448512..448559Clytia hemisphaericaexon
TCONS_00070800-exon-scaffold_58-1491911889:449075..449127TCONS_00070800-exon-scaffold_58-1491911889:449075..449127Clytia hemisphaericaexon
TCONS_00070800-exon-scaffold_58-1510915933:449075..449127TCONS_00070800-exon-scaffold_58-1510915933:449075..449127Clytia hemisphaericaexon
TCONS_00070800-exon-scaffold_58-1575043694:449075..449127TCONS_00070800-exon-scaffold_58-1575043694:449075..449127Clytia hemisphaericaexon
TCONS_00070800-exon-scaffold_58-1491911889:450413..450457TCONS_00070800-exon-scaffold_58-1491911889:450413..450457Clytia hemisphaericaexon
TCONS_00070800-exon-scaffold_58-1510915933:450413..450457TCONS_00070800-exon-scaffold_58-1510915933:450413..450457Clytia hemisphaericaexon
TCONS_00070800-exon-scaffold_58-1575043694:450413..450457TCONS_00070800-exon-scaffold_58-1575043694:450413..450457Clytia hemisphaericaexon
TCONS_00070800-exon-scaffold_58-1491911889:453687..453860TCONS_00070800-exon-scaffold_58-1491911889:453687..453860Clytia hemisphaericaexon
TCONS_00070800-exon-scaffold_58-1510915933:453687..453860TCONS_00070800-exon-scaffold_58-1510915933:453687..453860Clytia hemisphaericaexon
TCONS_00070800-exon-scaffold_58-1575043694:453687..453860TCONS_00070800-exon-scaffold_58-1575043694:453687..453860Clytia hemisphaericaexon
TCONS_00070800-exon-scaffold_58-1491911889:454637..454807TCONS_00070800-exon-scaffold_58-1491911889:454637..454807Clytia hemisphaericaexon
TCONS_00070800-exon-scaffold_58-1510915933:454637..454807TCONS_00070800-exon-scaffold_58-1510915933:454637..454807Clytia hemisphaericaexon
TCONS_00070800-exon-scaffold_58-1575043694:454637..454807TCONS_00070800-exon-scaffold_58-1575043694:454637..454807Clytia hemisphaericaexon
TCONS_00070800-exon-scaffold_58-1491911889:454965..455326TCONS_00070800-exon-scaffold_58-1491911889:454965..455326Clytia hemisphaericaexon
TCONS_00070800-exon-scaffold_58-1510915933:454965..455326TCONS_00070800-exon-scaffold_58-1510915933:454965..455326Clytia hemisphaericaexon
TCONS_00070800-exon-scaffold_58-1575043694:454965..455326TCONS_00070800-exon-scaffold_58-1575043694:454965..455326Clytia hemisphaericaexon
TCONS_00070800-exon-scaffold_58-1491911889:457248..457473TCONS_00070800-exon-scaffold_58-1491911889:457248..457473Clytia hemisphaericaexon
TCONS_00070800-exon-scaffold_58-1510915933:457248..457473TCONS_00070800-exon-scaffold_58-1510915933:457248..457473Clytia hemisphaericaexon
TCONS_00070800-exon-scaffold_58-1575043694:457248..457473TCONS_00070800-exon-scaffold_58-1575043694:457248..457473Clytia hemisphaericaexon
TCONS_00070800-exon-scaffold_58-1491911889:457779..457952TCONS_00070800-exon-scaffold_58-1491911889:457779..457952Clytia hemisphaericaexon
TCONS_00070800-exon-scaffold_58-1510915933:457779..457952TCONS_00070800-exon-scaffold_58-1510915933:457779..457952Clytia hemisphaericaexon
TCONS_00070800-exon-scaffold_58-1575043694:457779..457952TCONS_00070800-exon-scaffold_58-1575043694:457779..457952Clytia hemisphaericaexon
TCONS_00070800-exon-scaffold_58-1491911889:459133..459303TCONS_00070800-exon-scaffold_58-1491911889:459133..459303Clytia hemisphaericaexon
TCONS_00070800-exon-scaffold_58-1510915933:459133..459303TCONS_00070800-exon-scaffold_58-1510915933:459133..459303Clytia hemisphaericaexon
TCONS_00070800-exon-scaffold_58-1575043694:459133..459303TCONS_00070800-exon-scaffold_58-1575043694:459133..459303Clytia hemisphaericaexon
TCONS_00070800-exon-scaffold_58-1491911889:459695..460510TCONS_00070800-exon-scaffold_58-1491911889:459695..460510Clytia hemisphaericaexon
TCONS_00070800-exon-scaffold_58-1510915933:459695..460510TCONS_00070800-exon-scaffold_58-1510915933:459695..460510Clytia hemisphaericaexon
TCONS_00070800-exon-scaffold_58-1575043694:459695..460510TCONS_00070800-exon-scaffold_58-1575043694:459695..460510Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:448512..460510 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.581013 0.724845 0.153917 0.174192 1.22576 0.437916 2.3084 3.85547 10.3187 5.3178 7.34883 6.41739 1.17622 0.889098 4.51845 4.77543 0.311582 0.992765 1.44867 1.64053 0.456398 1.14183 0.528827 0.631881 2.22193 2.58469 1.91472 2.00237 1.24062 0.850236
Blast
BLAST of TCONS_00070800 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 2.778e-40
Identity = 73/158 (46.20%), Postives = 100/158 (63.29%), Query Frame = 2
Query:   14 CSKSCGGGTTTRSRKCDNPAPAHGGKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNIDPC 487
            C++SCG G  TR+R C+NP+  HGG+ CEG+  E   CN + C V G +  W  +G CS +CG GT+TR R C+ P P+ GG  C G  TQ + C+ + NCP+ GKWA W+ W +C   CGGG+++R R C +P P   G+KC+G  + S  CN DPC
Sbjct: 4598 CTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNER-NCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754          

HSP 2 Score: 157.532 bits (397), Expect = 2.812e-39
Identity = 71/158 (44.94%), Postives = 98/158 (62.03%), Query Frame = 2
Query:   14 CSKSCGGGTTTRSRKCDNPAPAHGGKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNIDPC 487
            CS+SCG GT TR+R C+NP PA GG  C+G++T+ + CN + C + G +  W+ +  CSV+CG G + R R C  P P  GG+ C+G   Q++ C++   CP  G W+ WS W +C + C GG  RRYRTCDNPPP   G+ C G     ++CN D C
Sbjct: 4655 CSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSD-PCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811          

HSP 3 Score: 153.295 bits (386), Expect = 5.217e-38
Identity = 71/158 (44.94%), Postives = 91/158 (57.59%), Query Frame = 2
Query:   14 CSKSCGGGTTTRSRKCDNPAPAHGGKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNIDPC 487
            CS SCGGG   R+R C +P P +GG+ CEGSD ++  CN+  C   G +  WSG+G CS TC  G   R R CD P PS GG+ C G  +Q + C+T + CPVDG W  W  W  C   CGGG + R R CD+P P   G+ C G+     +CN+  C
Sbjct: 4712 CSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM-CPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868          

HSP 4 Score: 147.132 bits (370), Expect = 5.598e-36
Identity = 69/154 (44.81%), Postives = 90/154 (58.44%), Query Frame = 2
Query:   14 CSKSCGGGTTTRSRKCDNPAPAHGGKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCN 475
            CS +CG G   RSR C+ P PA+GGK C+GSD E R C  K C VDG + EWS + EC+ +CG G +TR R C+ P    GG+ C+G   +   C+ +  CPV G W+ W  W +C + CG G+Q R R C+NPPP   G  C G     + CN
Sbjct: 4541 CSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIR-PCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCN 4693          

HSP 5 Score: 127.102 bits (318), Expect = 1.029e-29
Identity = 64/156 (41.03%), Postives = 84/156 (53.85%), Query Frame = 2
Query:   92 DCEGSDTETRECNAKQCA------------VDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNIDPCRDQDCFFKYTPF 523
            D +  DT   EC A+               V GGF +WS +  CSVTCG G + R R C+QP P+ GGK CQG   +  NC  +  CPVDG W+EWS WE C + CG G+Q R RTC+NP     G+ C+G  ++   CNI PC     +  + P+
Sbjct: 4498 DAQKEDTSEFECVARNLMGSVLVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNK-PCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPW 4652          

HSP 6 Score: 115.931 bits (289), Expect = 3.620e-26
Identity = 55/124 (44.35%), Postives = 69/124 (55.65%), Query Frame = 2
Query: 1052 CNTEECQVVSNGNWGEWTYWSDCSVTCANGVHKRTRKCDNPPRLGSGNDCEGEAVETKPCNTGRKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 1423
            CN   C +  +G W  W  WS CSV+C  G  +RTR C +P     G  CEG  V++  CN+   CP  G W+ WS W +C + C GG  RRYRTCDNPPP   G+ C G     ++CNT  CP
Sbjct: 4692 CNERNCPI--HGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSD-PCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP 4812          

HSP 7 Score: 110.923 bits (276), Expect = 1.318e-24
Identity = 51/124 (41.13%), Postives = 69/124 (55.65%), Query Frame = 2
Query: 1052 CNTEECQVVSNGNWGEWTYWSDCSVTCANGVHKRTRKCDNPPRLGSGNDCEGEAVETKPCNTGRKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 1423
            CN   C V  +G W  W  W  CS +C  G   R R C+NPP    G+ C+G   + + CN  R CP+ GKWA W+ W +C   CGGG+++R R C +P P   G+KC+G  + S  CN+  CP
Sbjct: 4635 CNIRPCPV--HGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNE-RNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCP 4755          

HSP 8 Score: 109.768 bits (273), Expect = 2.754e-24
Identity = 49/117 (41.88%), Postives = 68/117 (58.12%), Query Frame = 2
Query: 1073 VVSNGNWGEWTYWSDCSVTCANGVHKRTRKCDNPPRLGSGNDCEGEAVETKPCNTGRKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 1423
            V  +G + +W+ W  CSVTC  G+ KR+R C+ P     G  C+G  +E + C   + CPVDG W+EWS WE C + CG G+Q R RTC+NP     G+ C+G  ++   CN   CP
Sbjct: 4526 VQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQ-NKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCP 4641          

HSP 9 Score: 109.383 bits (272), Expect = 3.213e-24
Identity = 52/124 (41.94%), Postives = 66/124 (53.23%), Query Frame = 2
Query: 1052 CNTEECQVVSNGNWGEWTYWSDCSVTCANGVHKRTRKCDNPPRLGSGNDCEGEAVETKPCNTGRKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 1423
            CN++ C   ++GNW  W+ W  CS TC  G  +R R CDNPP    G  C G   + + CNT   CPVDG W  W  W  C   CGGG + R R CD+P P   G+ C G+     +CN  +CP
Sbjct: 4749 CNSDPCP--THGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM-CPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869          

HSP 10 Score: 108.612 bits (270), Expect = 5.657e-24
Identity = 49/102 (48.04%), Postives = 65/102 (63.73%), Query Frame = 2
Query:   14 CSKSCGGGTTTRSRKCDNPAPAHGGKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCP 319
            CS++C GG   R R CDNP P++GG+ C G D++ + CN   C VDG +G W  + +CS +CG G KTR+R CD P P  GG+ C G+TTQ   C+ Q  CP
Sbjct: 4769 CSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQA-CP 4869          
The following BLAST results are available for this feature:
BLAST of TCONS_00070800 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN12.778e-4046.20Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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