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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070800 ID=TCONS_00070800|Name=TCONS_00070800|organism=Clytia hemisphaerica|type=transcript|length=2240bpRun BLAST on NCBI transcript from alignment at scaffold_58:448512..460510+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070800 ID=TCONS_00070800|Name=TCONS_00070800|organism=Clytia hemisphaerica|type=transcript|length=11999bp|location=Sequence derived from alignment at scaffold_58:448512..460510+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00070800 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 160.614 bits (405), Expect = 2.778e-40 Identity = 73/158 (46.20%), Postives = 100/158 (63.29%), Query Frame = 2
Query: 14 CSKSCGGGTTTRSRKCDNPAPAHGGKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNIDPC 487
C++SCG G TR+R C+NP+ HGG+ CEG+ E CN + C V G + W +G CS +CG GT+TR R C+ P P+ GG C G TQ + C+ + NCP+ GKWA W+ W +C CGGG+++R R C +P P G+KC+G + S CN DPC
Sbjct: 4598 CTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNER-NCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754 HSP 2 Score: 157.532 bits (397), Expect = 2.812e-39 Identity = 71/158 (44.94%), Postives = 98/158 (62.03%), Query Frame = 2
Query: 14 CSKSCGGGTTTRSRKCDNPAPAHGGKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNIDPC 487
CS+SCG GT TR+R C+NP PA GG C+G++T+ + CN + C + G + W+ + CSV+CG G + R R C P P GG+ C+G Q++ C++ CP G W+ WS W +C + C GG RRYRTCDNPPP G+ C G ++CN D C
Sbjct: 4655 CSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSD-PCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811 HSP 3 Score: 153.295 bits (386), Expect = 5.217e-38 Identity = 71/158 (44.94%), Postives = 91/158 (57.59%), Query Frame = 2
Query: 14 CSKSCGGGTTTRSRKCDNPAPAHGGKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNIDPC 487
CS SCGGG R+R C +P P +GG+ CEGSD ++ CN+ C G + WSG+G CS TC G R R CD P PS GG+ C G +Q + C+T + CPVDG W W W C CGGG + R R CD+P P G+ C G+ +CN+ C
Sbjct: 4712 CSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM-CPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868 HSP 4 Score: 147.132 bits (370), Expect = 5.598e-36 Identity = 69/154 (44.81%), Postives = 90/154 (58.44%), Query Frame = 2
Query: 14 CSKSCGGGTTTRSRKCDNPAPAHGGKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCN 475
CS +CG G RSR C+ P PA+GGK C+GSD E R C K C VDG + EWS + EC+ +CG G +TR R C+ P GG+ C+G + C+ + CPV G W+ W W +C + CG G+Q R R C+NPPP G C G + CN
Sbjct: 4541 CSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIR-PCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCN 4693 HSP 5 Score: 127.102 bits (318), Expect = 1.029e-29 Identity = 64/156 (41.03%), Postives = 84/156 (53.85%), Query Frame = 2
Query: 92 DCEGSDTETRECNAKQCA------------VDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNIDPCRDQDCFFKYTPF 523
D + DT EC A+ V GGF +WS + CSVTCG G + R R C+QP P+ GGK CQG + NC + CPVDG W+EWS WE C + CG G+Q R RTC+NP G+ C+G ++ CNI PC + + P+
Sbjct: 4498 DAQKEDTSEFECVARNLMGSVLVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNK-PCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPW 4652 HSP 6 Score: 115.931 bits (289), Expect = 3.620e-26 Identity = 55/124 (44.35%), Postives = 69/124 (55.65%), Query Frame = 2
Query: 1052 CNTEECQVVSNGNWGEWTYWSDCSVTCANGVHKRTRKCDNPPRLGSGNDCEGEAVETKPCNTGRKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 1423
CN C + +G W W WS CSV+C G +RTR C +P G CEG V++ CN+ CP G W+ WS W +C + C GG RRYRTCDNPPP G+ C G ++CNT CP
Sbjct: 4692 CNERNCPI--HGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSD-PCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP 4812 HSP 7 Score: 110.923 bits (276), Expect = 1.318e-24 Identity = 51/124 (41.13%), Postives = 69/124 (55.65%), Query Frame = 2
Query: 1052 CNTEECQVVSNGNWGEWTYWSDCSVTCANGVHKRTRKCDNPPRLGSGNDCEGEAVETKPCNTGRKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 1423
CN C V +G W W W CS +C G R R C+NPP G+ C+G + + CN R CP+ GKWA W+ W +C CGGG+++R R C +P P G+KC+G + S CN+ CP
Sbjct: 4635 CNIRPCPV--HGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNE-RNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCP 4755 HSP 8 Score: 109.768 bits (273), Expect = 2.754e-24 Identity = 49/117 (41.88%), Postives = 68/117 (58.12%), Query Frame = 2
Query: 1073 VVSNGNWGEWTYWSDCSVTCANGVHKRTRKCDNPPRLGSGNDCEGEAVETKPCNTGRKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 1423
V +G + +W+ W CSVTC G+ KR+R C+ P G C+G +E + C + CPVDG W+EWS WE C + CG G+Q R RTC+NP G+ C+G ++ CN CP
Sbjct: 4526 VQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQ-NKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCP 4641 HSP 9 Score: 109.383 bits (272), Expect = 3.213e-24 Identity = 52/124 (41.94%), Postives = 66/124 (53.23%), Query Frame = 2
Query: 1052 CNTEECQVVSNGNWGEWTYWSDCSVTCANGVHKRTRKCDNPPRLGSGNDCEGEAVETKPCNTGRKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 1423
CN++ C ++GNW W+ W CS TC G +R R CDNPP G C G + + CNT CPVDG W W W C CGGG + R R CD+P P G+ C G+ +CN +CP
Sbjct: 4749 CNSDPCP--THGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM-CPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 HSP 10 Score: 108.612 bits (270), Expect = 5.657e-24 Identity = 49/102 (48.04%), Postives = 65/102 (63.73%), Query Frame = 2
Query: 14 CSKSCGGGTTTRSRKCDNPAPAHGGKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCP 319
CS++C GG R R CDNP P++GG+ C G D++ + CN C VDG +G W + +CS +CG G KTR+R CD P P GG+ C G+TTQ C+ Q CP
Sbjct: 4769 CSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQA-CP 4869 The following BLAST results are available for this feature:
BLAST of TCONS_00070800 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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