|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070793 ID=TCONS_00070793|Name=TCONS_00070793|organism=Clytia hemisphaerica|type=transcript|length=2315bpRun BLAST on NCBI transcript from alignment at scaffold_58:445159..460510+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070793 ID=TCONS_00070793|Name=TCONS_00070793|organism=Clytia hemisphaerica|type=transcript|length=15352bp|location=Sequence derived from alignment at scaffold_58:445159..460510+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00070793 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 306.99 bits (785), Expect = 1.392e-87 Identity = 155/351 (44.16%), Postives = 204/351 (58.12%), Query Frame = 2
Query: 446 NGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNTFECPKKPVNGGWGEWTKPTPCSKSCGGGTTTRSRKCDNPAPANGGWNCEGSGTETQKCNTNECPKQAVNGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNTFECPKKPVNGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 1498
+GG+ +W+ CS +CG G RSR C+ P PA+GGK C+GSD E R C CP V+G W EW+ C++SCG G TR+R C+NP+ +GG CEG+ E CN CP V+G W W CS+SCG G TR+R C+NP PA GG C+G++T+ + CN CP ++G W W + CS SCGGG R+R C +P P +GG+ CEGSD ++ CN+ C G + WSG+G CS TC G R R CD P PS GG+ C G +Q + C+T + CPVDG W W W C CGGG + R R CD+P P G+ C G+ +CN +CP
Sbjct: 4529 HGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCP---VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCP---VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCP---IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM-CPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 HSP 2 Score: 259.225 bits (661), Expect = 1.424e-71 Identity = 128/292 (43.84%), Postives = 173/292 (59.25%), Query Frame = 2
Query: 623 VNGGWGEWTKPTPCSKSCGGGTTTRSRKCDNPAPANGGWNCEGSGTETQKCNTNECPKQAVNGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNTFECPKKPVNGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 1498
V+GG+ +W+ CS +CG G RSR C+ P PANGG C+GS E + C CP V+G W EW+ C++SCG G TR+R C+NP+ HGG+ CEG+ E CN CP V+G W W CS+SCG G TR+R C+NP PA GG C+G++T+ + CN + C + G + W+ + CSV+CG G + R R C P P GG+ C+G Q++ C++ CP G W+ WS W +C + C GG RRYRTCDNPPP G+ C G ++CNT CP
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCP---VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCP---VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSD-PCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP 4812 HSP 3 Score: 162.54 bits (410), Expect = 8.170e-41 Identity = 81/179 (45.25%), Postives = 105/179 (58.66%), Query Frame = 2
Query: 446 NGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNTFECPKKPVNGGWGEWTKPTPCSKSCGGGTTTRSRKCDNPAPANGGWNCEGSGTETQKCNTNECPKQAVNGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNTFECPKKP 982
+G W W + CS SCGGG R+R C +P P +GG+ CEGSD ++ CN+ CP +G W W+ CS++C GG R R CDNP P+NGG C G ++ Q+CNT+ CP V+G WG W + CS SCGGG+ TR R CD+P P GG+ C G T+ CN CP P
Sbjct: 4700 HGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPT---HGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP---VDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACPGGP 4872 The following BLAST results are available for this feature:
BLAST of TCONS_00070793 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.