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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070787 ID=TCONS_00070787|Name=TCONS_00070787|organism=Clytia hemisphaerica|type=transcript|length=3653bpRun BLAST on NCBI transcript from alignment at scaffold_58:445150..460510+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070787 ID=TCONS_00070787|Name=TCONS_00070787|organism=Clytia hemisphaerica|type=transcript|length=15361bp|location=Sequence derived from alignment at scaffold_58:445150..460510+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00070787 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 168.703 bits (426), Expect = 7.799e-42 Identity = 77/170 (45.29%), Postives = 106/170 (62.35%), Query Frame = 2
Query: 455 NGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNIDPC 964
+G W EW+ C++SCG G TR+R C+NP+ HGG+ CEG+ E CN + C V G + W +G CS +CG GT+TR R C+ P P+ GG C G TQ + C+ + NCP+ GKWA W+ W +C CGGG+++R R C +P P G+KC+G + S CN DPC
Sbjct: 4586 DGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNER-NCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754 HSP 2 Score: 160.614 bits (405), Expect = 2.563e-39 Identity = 74/170 (43.53%), Postives = 96/170 (56.47%), Query Frame = 2
Query: 455 NGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNIDPC 964
+G W W + CS SCGGG R+R C +P P +GG+ CEGSD ++ CN+ C G + WSG+G CS TC G R R CD P PS GG+ C G +Q + C+T + CPVDG W W W C CGGG + R R CD+P P G+ C G+ +CN+ C
Sbjct: 4700 HGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM-CPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868 HSP 3 Score: 152.91 bits (385), Expect = 5.249e-37 Identity = 72/166 (43.37%), Postives = 97/166 (58.43%), Query Frame = 2
Query: 455 NGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCN 952
+GG+ +W+ CS +CG G RSR C+ P PA+GGK C+GSD E R C K C VDG + EWS + EC+ +CG G +TR R C+ P GG+ C+G + C+ + CPV G W+ W W +C + CG G+Q R R C+NPPP G C G + CN
Sbjct: 4529 HGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIR-PCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCN 4693 HSP 4 Score: 126.716 bits (317), Expect = 5.912e-29 Identity = 64/156 (41.03%), Postives = 84/156 (53.85%), Query Frame = 2
Query: 569 DCEGSDTETRECNAKQCA------------VDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNIDPCRDQDCFFKYTPF 1000
D + DT EC A+ V GGF +WS + CSVTCG G + R R C+QP P+ GGK CQG + NC + CPVDG W+EWS WE C + CG G+Q R RTC+NP G+ C+G ++ CNI PC + + P+
Sbjct: 4498 DAQKEDTSEFECVARNLMGSVLVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNK-PCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPW 4652 HSP 5 Score: 120.168 bits (300), Expect = 4.855e-27 Identity = 55/124 (44.35%), Postives = 72/124 (58.06%), Query Frame = 2
Query: 1529 CNTKECQVVGNGNWGEWTYWSDCSATCGNGVHKRTRKCDNPPAVGGGKDCQGEAVETKPCNTGQKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 1900
CN + C + +G W W WS CS +CG G +RTR C +P GG+ C+G V++ CN+ CP G W+ WS W +C + C GG RRYRTCDNPPP G+ C G ++CNT CP
Sbjct: 4692 CNERNCPI--HGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNS-DPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP 4812 HSP 6 Score: 116.316 bits (290), Expect = 7.358e-26 Identity = 51/114 (44.74%), Postives = 69/114 (60.53%), Query Frame = 2
Query: 1559 NGNWGEWTYWSDCSATCGNGVHKRTRKCDNPPAVGGGKDCQGEAVETKPCNTGQKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 1900
+G + +W+ W CS TCG G+ KR+R C+ P GGK CQG +E + C + CPVDG W+EWS WE C + CG G+Q R RTC+NP G+ C+G ++ CN CP
Sbjct: 4529 HGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQ-NKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCP 4641 HSP 7 Score: 115.546 bits (288), Expect = 1.328e-25 Identity = 55/124 (44.35%), Postives = 69/124 (55.65%), Query Frame = 2
Query: 2465 CNTEECQVVSNGNWGEWTYWSDCSVTCANGVHKRTRKCDNPPRLGSGNDCEGEAVETKPCNTGRKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 2836
CN C + +G W W WS CSV+C G +RTR C +P G CEG V++ CN+ CP G W+ WS W +C + C GG RRYRTCDNPPP G+ C G ++CNT CP
Sbjct: 4692 CNERNCPI--HGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSD-PCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP 4812 HSP 8 Score: 115.161 bits (287), Expect = 1.893e-25 Identity = 52/114 (45.61%), Postives = 71/114 (62.28%), Query Frame = 2
Query: 455 NGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCP 796
+G W W+ CS++C GG+ R R CDNP P++GG+ C G D++ + CN C VDG +G W + +CS +CG G KTR+R CD P P GG+ C G+TTQ C+ Q CP
Sbjct: 4757 HGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQA-CP 4869 HSP 9 Score: 114.775 bits (286), Expect = 2.186e-25 Identity = 52/124 (41.94%), Postives = 70/124 (56.45%), Query Frame = 2
Query: 1529 CNTKECQVVGNGNWGEWTYWSDCSATCGNGVHKRTRKCDNPPAVGGGKDCQGEAVETKPCNTGQKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 1900
CN + C V +G W W W CS +CG G R R C+NPP GG C G + + CN + CP+ GKWA W+ W +C CGGG+++R R C +P P G+KC+G + S CN+ CP
Sbjct: 4635 CNIRPCPV--HGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNE-RNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCP 4755 HSP 10 Score: 113.62 bits (283), Expect = 5.346e-25 Identity = 53/124 (42.74%), Postives = 66/124 (53.23%), Query Frame = 2
Query: 1529 CNTKECQVVGNGNWGEWTYWSDCSATCGNGVHKRTRKCDNPPAVGGGKDCQGEAVETKPCNTGQKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 1900
CN+ C +GNW W+ W CS TC G +R R CDNPP GG+ C G + + CNT CPVDG W W W C CGGG + R R CD+P P G+ C G+ +CN +CP
Sbjct: 4749 CNSDPCPT--HGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNT-DMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 HSP 11 Score: 110.538 bits (275), Expect = 4.755e-24 Identity = 51/124 (41.13%), Postives = 69/124 (55.65%), Query Frame = 2
Query: 2465 CNTEECQVVSNGNWGEWTYWSDCSVTCANGVHKRTRKCDNPPRLGSGNDCEGEAVETKPCNTGRKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 2836
CN C V +G W W W CS +C G R R C+NPP G+ C+G + + CN R CP+ GKWA W+ W +C CGGG+++R R C +P P G+KC+G + S CN+ CP
Sbjct: 4635 CNIRPCPV--HGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNE-RNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCP 4755 HSP 12 Score: 109.383 bits (272), Expect = 9.183e-24 Identity = 49/117 (41.88%), Postives = 68/117 (58.12%), Query Frame = 2
Query: 2486 VVSNGNWGEWTYWSDCSVTCANGVHKRTRKCDNPPRLGSGNDCEGEAVETKPCNTGRKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 2836
V +G + +W+ W CSVTC G+ KR+R C+ P G C+G +E + C + CPVDG W+EWS WE C + CG G+Q R RTC+NP G+ C+G ++ CN CP
Sbjct: 4526 VQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQ-NKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCP 4641 HSP 13 Score: 109.383 bits (272), Expect = 1.025e-23 Identity = 52/124 (41.94%), Postives = 66/124 (53.23%), Query Frame = 2
Query: 2465 CNTEECQVVSNGNWGEWTYWSDCSVTCANGVHKRTRKCDNPPRLGSGNDCEGEAVETKPCNTGRKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 2836
CN++ C ++GNW W+ W CS TC G +R R CDNPP G C G + + CNT CPVDG W W W C CGGG + R R CD+P P G+ C G+ +CN +CP
Sbjct: 4749 CNSDPCP--THGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM-CPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 The following BLAST results are available for this feature:
BLAST of TCONS_00070787 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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