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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070775 ID=TCONS_00070775|Name=TCONS_00070775|organism=Clytia hemisphaerica|type=transcript|length=2379bp
TCTGTTGAGGCCGAAacgtttaaaaataaatttcaaaaaatgaaccaaaa
gcaGCTTCTGTTTTTTACTGAAGATGTGTGGAAGGAGtgatttatttaat
tatttaaaaattattttacaaaatgattACATTCAAATATTAGGGCTAGA
CCCATCAAATCGAAAAGTATTAGGTCTTGAATTAGTGATAACAGTGAATT
GATTGATATACACTCTTAACATTAACCTCTCTCGTTTTCTAATTTGACTG
GTAATAATATaacattttgtttagaaatatgaAACCTTTTTCATCAACGT
GTTGATGCGAGTTCAGAGAAGAATGTAACTCATTCTGTTGAATAGTTTCG
TATTTTGACGAAGTTTCtcttttatacaaaaaaggATACTGACTGGTTTT
GTCAAGatgttttatttcaatattcTGGCTATTTTGTTgttactttactt
ttttaaagGTAAGTAGGACTTTAACTATAATTATATTTACTACTTATTTC
GTCCCCTATCTCACTGATCTCGCATCAATTTTTATATGAACCTTTTGTCA
CAAGAAAAGCTAAAGTAAAGAAAAGTTTGGATTAAAAAATCCCACtgaaa
aagttttaattgaaacttacaatgtatagcaatgtgccctcccggttatt
accataatggctttatggcaactcctgaacttgggcacatgATGTACGGT
TTAATTGAAACTTATTGATTTTTAGGAGCCATCGGTCTTGATTGTTACAT
GTGTAGTTATTACGAAGGATATCAATTGCCTCATCCTGGTTGTAAAGCTT
TGGTGGACACGAAAAATTTGACCAAGAGTTGCAGTGATGATGAAGTTTGC
CAGTCTATGTTCGTATTCAAGAGAAGTGAAGCAAGTCAAACTGAAGAGGA
TTTTTACAGCGGTTTTAATTCCGTCATGCGTGAATGTCGTCCAAGGGCAA
AAGTAGCATGTGGTGATAAAAAAGACGAGAGATGGTATAATTGTACACAC
CGACCTTTGACGGATGGAAAAGTAACTGAATGCTTTGCGTGTTGTGAGGA
AGGCAGGTGTGGAGCCAAGGTGGAGTTATTTAAAGATGAATGGTCACCTA
CGGATAAAGATAAAGATAAAGGTGCAGGTGAAGGTGAAGGACCCTCTCCT
ACGGTTATCGCTCTAGCAGTTGTGATTCCTGCTGTTGTTTTGTTGGCAGT
TGCCGTTGCTTGGAAGAAGAAACTTTACCAACGTGTATCTAATTGTAATA
ATTAACATCTTCATGTCAAATTGTTGCACTTTTAAATCACATCTTGAAGA
ATTTTCGATATGATCAATCTCGAATTCTGAATCTTGATAGTCATAACATG
CAAAATTTGTTGTTACCTTTGTTATACTATGGGTGTATGAAATGTTAAAT
ATTGTGGAACATGTATTTTTGTTATCAATTTTTAAGTCcatttataaaat
ttataatatataaaactCCCTCCAAAGGGAGGATCAACTGACGAAAATGC
CAGTTATCTAGGATTAAAGATTAGATTTAAAAGTATCTTGTAAATAAGGT
CTACTATACTTGGCGGTCCCTACATTTTATGGATATCTAGAGAAAGAAAG
CTGGTTAAAACAATatttaaaattggcaaaaatgttCAAGATGATTTTGA
ATATAAGTCGAAAAGTGGGATCGAGTTGAGAGTTCAACCGGTGAAAAAGT
CATTGAGTTAAAAAAGCCCGGATTTTCCTTGCGTTCCATTCCAGGAAACT
TTACAACtaatttttaagtattttttgtaagaaaattcTTTACAGGGGTA
TTGATTAAAGTTTTGTACAAAGTAGATGATAAATTATATTTTGTAaagag
ttttatttttaaatgacaTTCATCCCTTTTAACCCTTACCCAAGTATGGA
AAAGTAACATCCAAACCTGTTGGTGAGCTTTTCCAATATGTAATGCGTTG
TTTTATAAGAGCTTTTTGAGGCCTTCCGgtcttcttaactttttgagttt
taagcttaaaaaagttcttaacatgttcttattttcaccatttttagagt
attttagtccattttgccaagaaatcggctgttttagagtctgcgatgcc
ttaaaatgttcttaacttgtacttaagattttggccatgtttaattttta
taaaaaaccgtgTATGCGTTAATTGGCAACTTATTATCACGAAAATTAAT
TTCACCGAAATCATTTTTCCTCAAAATAGAGTACTTTTGTAGTTTTCTCA
CTACGAAATTAGTACATGCCAAAATTAGGAAAATTTAGGAGCTCTTCTGC
TTATCatttagcctggagatccatgctatgatttcttattctatatactg
atggcgaaatataccgggtgcaccaaaNN Run BLAST on NCBI transcript from alignment at scaffold_58:151590..153968+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070775 ID=TCONS_00070775|Name=TCONS_00070775|organism=Clytia hemisphaerica|type=transcript|length=2379bp|location=Sequence derived from alignment at scaffold_58:151590..153968+ (Clytia hemisphaerica)
TCTGTTGAGGCCGAAacgtttaaaaataaatttcaaaaaatgaaccaaaa
gcaGCTTCTGTTTTTTACTGAAGATGTGTGGAAGGAGtgatttatttaat
tatttaaaaattattttacaaaatgattACATTCAAATATTAGGGCTAGA
CCCATCAAATCGAAAAGTATTAGGTCTTGAATTAGTGATAACAGTGAATT
GATTGATATACACTCTTAACATTAACCTCTCTCGTTTTCTAATTTGACTG
GTAATAATATaacattttgtttagaaatatgaAACCTTTTTCATCAACGT
GTTGATGCGAGTTCAGAGAAGAATGTAACTCATTCTGTTGAATAGTTTCG
TATTTTGACGAAGTTTCtcttttatacaaaaaaggATACTGACTGGTTTT
GTCAAGatgttttatttcaatattcTGGCTATTTTGTTgttactttactt
ttttaaagGTAAGTAGGACTTTAACTATAATTATATTTACTACTTATTTC
GTCCCCTATCTCACTGATCTCGCATCAATTTTTATATGAACCTTTTGTCA
CAAGAAAAGCTAAAGTAAAGAAAAGTTTGGATTAAAAAATCCCACtgaaa
aagttttaattgaaacttacaatgtatagcaatgtgccctcccggttatt
accataatggctttatggcaactcctgaacttgggcacatgATGTACGGT
TTAATTGAAACTTATTGATTTTTAGGAGCCATCGGTCTTGATTGTTACAT
GTGTAGTTATTACGAAGGATATCAATTGCCTCATCCTGGTTGTAAAGCTT
TGGTGGACACGAAAAATTTGACCAAGAGTTGCAGTGATGATGAAGTTTGC
CAGTCTATGTTCGTATTCAAGAGAAGTGAAGCAAGTCAAACTGAAGAGGA
TTTTTACAGCGGTTTTAATTCCGTCATGCGTGAATGTCGTCCAAGGGCAA
AAGTAGCATGTGGTGATAAAAAAGACGAGAGATGGTATAATTGTACACAC
CGACCTTTGACGGATGGAAAAGTAACTGAATGCTTTGCGTGTTGTGAGGA
AGGCAGGTGTGGAGCCAAGGTGGAGTTATTTAAAGATGAATGGTCACCTA
CGGATAAAGATAAAGATAAAGGTGCAGGTGAAGGTGAAGGACCCTCTCCT
ACGGTTATCGCTCTAGCAGTTGTGATTCCTGCTGTTGTTTTGTTGGCAGT
TGCCGTTGCTTGGAAGAAGAAACTTTACCAACGTGTATCTAATTGTAATA
ATTAACATCTTCATGTCAAATTGTTGCACTTTTAAATCACATCTTGAAGA
ATTTTCGATATGATCAATCTCGAATTCTGAATCTTGATAGTCATAACATG
CAAAATTTGTTGTTACCTTTGTTATACTATGGGTGTATGAAATGTTAAAT
ATTGTGGAACATGTATTTTTGTTATCAATTTTTAAGTCcatttataaaat
ttataatatataaaactCCCTCCAAAGGGAGGATCAACTGACGAAAATGC
CAGTTATCTAGGATTAAAGATTAGATTTAAAAGTATCTTGTAAATAAGGT
CTACTATACTTGGCGGTCCCTACATTTTATGGATATCTAGAGAAAGAAAG
CTGGTTAAAACAATatttaaaattggcaaaaatgttCAAGATGATTTTGA
ATATAAGTCGAAAAGTGGGATCGAGTTGAGAGTTCAACCGGTGAAAAAGT
CATTGAGTTAAAAAAGCCCGGATTTTCCTTGCGTTCCATTCCAGGAAACT
TTACAACtaatttttaagtattttttgtaagaaaattcTTTACAGGGGTA
TTGATTAAAGTTTTGTACAAAGTAGATGATAAATTATATTTTGTAaagag
ttttatttttaaatgacaTTCATCCCTTTTAACCCTTACCCAAGTATGGA
AAAGTAACATCCAAACCTGTTGGTGAGCTTTTCCAATATGTAATGCGTTG
TTTTATAAGAGCTTTTTGAGGCCTTCCGgtcttcttaactttttgagttt
taagcttaaaaaagttcttaacatgttcttattttcaccatttttagagt
attttagtccattttgccaagaaatcggctgttttagagtctgcgatgcc
ttaaaatgttcttaacttgtacttaagattttggccatgtttaattttta
taaaaaaccgtgTATGCGTTAATTGGCAACTTATTATCACGAAAATTAAT
TTCACCGAAATCATTTTTCCTCAAAATAGAGTACTTTTGTAGTTTTCTCA
CTACGAAATTAGTACATGCCAAAATTAGGAAAATTTAGGAGCTCTTCTGC
TTATCatttagcctggagatccatgctatgatttcttattctatatactg
atggcgaaatataccgggtgcaccaaaNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070775-exon-scaffold_58-1491911889:151590..153968 | TCONS_00070775-exon-scaffold_58-1491911889:151590..153968 | Clytia hemisphaerica | exon |
| TCONS_00070775-exon-scaffold_58-1510915933:151590..153968 | TCONS_00070775-exon-scaffold_58-1510915933:151590..153968 | Clytia hemisphaerica | exon |
| TCONS_00070775-exon-scaffold_58-1575043694:151590..153968 | TCONS_00070775-exon-scaffold_58-1575043694:151590..153968 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:151590..153968 + |
Blast
The following BLAST results are available for this feature:
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