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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070771 ID=TCONS_00070771|Name=TCONS_00070771|organism=Clytia hemisphaerica|type=transcript|length=1903bp
gcattttttgataAACTTCAGATTacttaatatatattttttcttttttc
agcaaaaagtaaacattgaaaatgaaaattatagtAAAACAGACTAAAAC
ATATTAGCATTTTATGAACAGTTATGAGGTTAATCTGGTTGGTTTGTCAC
GTATTATGAAATCTGTGTTTAAAAGTgATACTGACTGGTTTTGTCAAGat
gttttatttcaatattcTGGCTATTTTGTTgttactttacttttttaaag
GAGCCATCGGTCTTGATTGTTACATGTGTAGTTATTACGAAGGATATCAA
TTGCCTCATCCTGGTTGTAAAGCTTTGGTGGACACGAAAAATTTGACCAA
GAGTTGCAGTGATGATGAAGTTTGCCAGTCTATGTTCGTATTCAAGAGAA
GTGAAGCAAGTCAAACTGAAGAGGATTTTTACAGCGGTTTTAATTCCGTC
ATGCGTGAATGTCGTCCAAGGGCAAAAGTAGCATGTGGTGATAAAAAAGA
CGAGAGATGGTATAATTGTACACACCGACCTTTGACGGATGGAAAAGTAA
CTGAATGCTTTGCGTGTTGTGAGGAAGGCAGGTGTGGAGCCAAGGTGGAG
TTATTTAAAGATGAATGGTCACCTACGGATAAAGATAAAGATAAAGGTGC
AGGTGAAGGTGAAGGACCCTCTCCTACGGTTATCGCTCTAGCAGTTGTGA
TTCCTGCTGTTGTTTTGTTGGCAGTTGCCGTTGCTTGGAAGAAGAAACTT
TACCAACGTGTATCTAATTGTAATAATTAACATCTTCATGTCAAATTGTT
GCACTTTTAAATCACATCTTGAAGAATTTTCGATATGATCAATCTCGAAT
TCTGAATCTTGATAGTCATAACATGCAAAATTTGTTGTTACCTTTGTTAT
ACTATGGGTGTATGAAATGTTAAATATTGTGGAACATGTATTTTTGTTAT
CAATTTTTAAGTCcatttataaaatttataatatataaaactCCCTCCAA
AGGGAGGATCAACTGACGAAAATGCCAGTTATCTAGGATTAAAGATTAGA
TTTAAAAGTATCTTGTAAATAAGGTCTACTATACTTGGCGGTCCCTACAT
TTTATGGATATCTAGAGAAAGAAAGCTGGTTAAAACAATatttaaaattg
gcaaaaatgttCAAGATGATTTTGAATATAAGTCGAAAAGTGGGATCGAG
TTGAGAGTTCAACCGGTGAAAAAGTCATTGAGTTAAAAAAGCCCGGATTT
TCCTTGCGTTCCATTCCAGGAAACTTTACAACtaatttttaagtattttt
tgtaagaaaattcTTTACAGGGGTATTGATTAAAGTTTTGTACAAAGTAG
ATGATAAATTATATTTTGTAaagagttttatttttaaatgacaTTCATCC
CTTTTAACCCTTACCCAAGTATGGAAAAGTAACATCCAAACCTGTTGGTG
AGCTTTTCCAATATGTAATGCGTTGTTTTATAAGAGCTTTTTGAGGCCTT
CCGgtcttcttaactttttgagttttaagcttaaaaaagttcttaacatg
ttcttattttcaccatttttagagtattttagtccattttgccaagaaat
cggctgttttagagtctgcgatgccttaaaatgttcttaacttgtactta
agattttggccatgtttaatttttataaaaaaccgtgTATGCGTTAATTG
GCAACTTATTATCACGAAAATTAATTTCACCGAAATCATTTTTCCTCAAA
ATAGAGTACTTTTGTAGTTTTCTCACTACGAAATTAGTACATGCCAAAAT
TAGGAAAATTTAGGAGCTCTTCTGCTTATCatttagcctggagatccatg
ctatgatttcttattctatatactgatggcgaaatataccgggtgcacca
aaN Run BLAST on NCBI protein sequence of TCONS_00070771-protein >TCONS_00070771-protein ID=TCONS_00070771-protein|Name=TCONS_00070771-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
MFYFNILAILLLLYFFKGAIGLDCYMCSYYEGYQLPHPGCKALVDTKNLT
KSCSDDEVCQSMFVFKRSEASQTEEDFYSGFNSVMRECRPRAKVACGDKK
DERWYNCTHRPLTDGKVTECFACCEEGRCGAKVELFKDEWSPTDKDKDKG
AGEGEGPSPTVIALAVVIPAVVLLAVAVAWKKKLYQRVSNCNN Run BLAST on NCBI transcript from alignment at scaffold_58:151187..153967+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070771 ID=TCONS_00070771|Name=TCONS_00070771|organism=Clytia hemisphaerica|type=transcript|length=2781bp|location=Sequence derived from alignment at scaffold_58:151187..153967+ (Clytia hemisphaerica)
gcattttttgataAACTTCAGATTacttaatatatattttttcttttttc
agcaaaaagtaaacattgaaaatgaaaattatagtAAAACAGACTAAAAC
ATATTAGCATTTTATGAACAGTTATGAGGTTAATCTGGTTGGTTTGTCAC
GTATTATGAAATCTGTGTTTAAAAGTGTAAGTAAAATGTATTCAAAATGT
GTATAAGCTTGCATTGTGAAAGCTGTAAGTGACAGcactttttcaagttt
ttgttgtTATTGCCTTTTTAGTGTCTGAAAGTTTCCATTATATTCCTGTT
TGATTTTACTAAAAGTTTTTCGTCTTTTAAAAATTAGGATACTTTTTGAA
CAATCatttaattcatttttcaatacaacaaatttttttactGACGATGG
TACTCTGTTGAGGCCGAAacgtttaaaaataaatttcaaaaaatgaacca
aaagcaGCTTCTGTTTTTTACTGAAGATGTGTGGAAGGAGtgatttattt
aattatttaaaaattattttacaaaatgattACATTCAAATATTAGGGCT
AGACCCATCAAATCGAAAAGTATTAGGTCTTGAATTAGTGATAACAGTGA
ATTGATTGATATACACTCTTAACATTAACCTCTCTCGTTTTCTAATTTGA
CTGGTAATAATATaacattttgtttagaaatatgaAACCTTTTTCATCAA
CGTGTTGATGCGAGTTCAGAGAAGAATGTAACTCATTCTGTTGAATAGTT
TCGTATTTTGACGAAGTTTCtcttttatacaaaaaaggATACTGACTGGT
TTTGTCAAGatgttttatttcaatattcTGGCTATTTTGTTgttacttta
cttttttaaagGTAAGTAGGACTTTAACTATAATTATATTTACTACTTAT
TTCGTCCCCTATCTCACTGATCTCGCATCAATTTTTATATGAACCTTTTG
TCACAAGAAAAGCTAAAGTAAAGAAAAGTTTGGATTAAAAAATCCCACtg
aaaaagttttaattgaaacttacaatgtatagcaatgtgccctcccggtt
attaccataatggctttatggcaactcctgaacttgggcacatgATGTAC
GGTTTAATTGAAACTTATTGATTTTTAGGAGCCATCGGTCTTGATTGTTA
CATGTGTAGTTATTACGAAGGATATCAATTGCCTCATCCTGGTTGTAAAG
CTTTGGTGGACACGAAAAATTTGACCAAGAGTTGCAGTGATGATGAAGTT
TGCCAGTCTATGTTCGTATTCAAGAGAAGTGAAGCAAGTCAAACTGAAGA
GGATTTTTACAGCGGTTTTAATTCCGTCATGCGTGAATGTCGTCCAAGGG
CAAAAGTAGCATGTGGTGATAAAAAAGACGAGAGATGGTATAATTGTACA
CACCGACCTTTGACGGATGGAAAAGTAACTGAATGCTTTGCGTGTTGTGA
GGAAGGCAGGTGTGGAGCCAAGGTGGAGTTATTTAAAGATGAATGGTCAC
CTACGGATAAAGATAAAGATAAAGGTGCAGGTGAAGGTGAAGGACCCTCT
CCTACGGTTATCGCTCTAGCAGTTGTGATTCCTGCTGTTGTTTTGTTGGC
AGTTGCCGTTGCTTGGAAGAAGAAACTTTACCAACGTGTATCTAATTGTA
ATAATTAACATCTTCATGTCAAATTGTTGCACTTTTAAATCACATCTTGA
AGAATTTTCGATATGATCAATCTCGAATTCTGAATCTTGATAGTCATAAC
ATGCAAAATTTGTTGTTACCTTTGTTATACTATGGGTGTATGAAATGTTA
AATATTGTGGAACATGTATTTTTGTTATCAATTTTTAAGTCcatttataa
aatttataatatataaaactCCCTCCAAAGGGAGGATCAACTGACGAAAA
TGCCAGTTATCTAGGATTAAAGATTAGATTTAAAAGTATCTTGTAAATAA
GGTCTACTATACTTGGCGGTCCCTACATTTTATGGATATCTAGAGAAAGA
AAGCTGGTTAAAACAATatttaaaattggcaaaaatgttCAAGATGATTT
TGAATATAAGTCGAAAAGTGGGATCGAGTTGAGAGTTCAACCGGTGAAAA
AGTCATTGAGTTAAAAAAGCCCGGATTTTCCTTGCGTTCCATTCCAGGAA
ACTTTACAACtaatttttaagtattttttgtaagaaaattcTTTACAGGG
GTATTGATTAAAGTTTTGTACAAAGTAGATGATAAATTATATTTTGTAaa
gagttttatttttaaatgacaTTCATCCCTTTTAACCCTTACCCAAGTAT
GGAAAAGTAACATCCAAACCTGTTGGTGAGCTTTTCCAATATGTAATGCG
TTGTTTTATAAGAGCTTTTTGAGGCCTTCCGgtcttcttaactttttgag
ttttaagcttaaaaaagttcttaacatgttcttattttcaccatttttag
agtattttagtccattttgccaagaaatcggctgttttagagtctgcgat
gccttaaaatgttcttaacttgtacttaagattttggccatgtttaattt
ttataaaaaaccgtgTATGCGTTAATTGGCAACTTATTATCACGAAAATT
AATTTCACCGAAATCATTTTTCCTCAAAATAGAGTACTTTTGTAGTTTTC
TCACTACGAAATTAGTACATGCCAAAATTAGGAAAATTTAGGAGCTCTTC
TGCTTATCatttagcctggagatccatgctatgatttcttattctatata
ctgatggcgaaatataccgggtgcaccaaaN Coding sequence (CDS) from alignment at scaffold_58:151187..153967+ >TCONS_00070771 ID=TCONS_00070771|Name=TCONS_00070771|organism=Clytia hemisphaerica|type=CDS|length=1164bp|location=Sequence derived from alignment at scaffold_58:151187..153967+ (Clytia hemisphaerica)
atgttttatttcaatattcTGGCTATTTTGTTgttactttacttttttaa
agGAGCCATCGGTCTTGATTGTTACATGTGTAGTTATTACGAAGGATATC
AATTGCCTCATCCTGGTTGTAAAGCTTTGGTGGACACGAAAAATTTGACC
AAGAGTTGCAGTGATGATGAAGTTTGCCAGTCTATGTTCGTATTCAAGAG
AAGTGAAGCAAGTCAAACTGAAGAGGATTTTTACAGCGGTTTTAATTCCG
TCATGCGTGAATGTCGTCCAAGGGCAAAAGTAGCATGTGGTGATAAAAAA
GACGAGAGATGGTATAATTGTACACACCGACCTTTGACGGATGGAAAAGT
AACTGAATGCTTTGCGTGTTGTGAGGAAGGCAGGTGTGGAGCCAAGGTGG
AGTTATTTAAAGATGAATGGTCACCTACGGATAAAGATAAAGATAAAGGT
GCAGGTGAAGGTGAAGGACCCTCTCCTACGGTTATCGCTCTAGCAGTTGT
GATTCCTGCTGTTGTTTTGTTGGCAGTTGCCGTTGCTTGGAAGAAGAAAC
TTTACCAACGTGTATCTAATTGTAATAATTAAatgttttatttcaatatt
cTGGCTATTTTGTTgttactttacttttttaaagGAGCCATCGGTCTTGA
TTGTTACATGTGTAGTTATTACGAAGGATATCAATTGCCTCATCCTGGTT
GTAAAGCTTTGGTGGACACGAAAAATTTGACCAAGAGTTGCAGTGATGAT
GAAGTTTGCCAGTCTATGTTCGTATTCAAGAGAAGTGAAGCAAGTCAAAC
TGAAGAGGATTTTTACAGCGGTTTTAATTCCGTCATGCGTGAATGTCGTC
CAAGGGCAAAAGTAGCATGTGGTGATAAAAAAGACGAGAGATGGTATAAT
TGTACACACCGACCTTTGACGGATGGAAAAGTAACTGAATGCTTTGCGTG
TTGTGAGGAAGGCAGGTGTGGAGCCAAGGTGGAGTTATTTAAAGATGAAT
GGTCACCTACGGATAAAGATAAAGATAAAGGTGCAGGTGAAGGTGAAGGA
CCCTCTCCTACGGTTATCGCTCTAGCAGTTGTGATTCCTGCTGTTGTTTT
GTTGGCAGTTGCCGTTGCTTGGAAGAAGAAACTTTACCAACGTGTATCTA
ATTGTAATAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070771-exon-scaffold_58-1491911889:151187..151362 | TCONS_00070771-exon-scaffold_58-1491911889:151187..151362 | Clytia hemisphaerica | exon |
| TCONS_00070771-exon-scaffold_58-1510915933:151187..151362 | TCONS_00070771-exon-scaffold_58-1510915933:151187..151362 | Clytia hemisphaerica | exon |
| TCONS_00070771-exon-scaffold_58-1575043694:151187..151362 | TCONS_00070771-exon-scaffold_58-1575043694:151187..151362 | Clytia hemisphaerica | exon |
| TCONS_00070771-exon-scaffold_58-1491911889:151974..152047 | TCONS_00070771-exon-scaffold_58-1491911889:151974..152047 | Clytia hemisphaerica | exon |
| TCONS_00070771-exon-scaffold_58-1510915933:151974..152047 | TCONS_00070771-exon-scaffold_58-1510915933:151974..152047 | Clytia hemisphaerica | exon |
| TCONS_00070771-exon-scaffold_58-1575043694:151974..152047 | TCONS_00070771-exon-scaffold_58-1575043694:151974..152047 | Clytia hemisphaerica | exon |
| TCONS_00070771-exon-scaffold_58-1491911889:152315..153967 | TCONS_00070771-exon-scaffold_58-1491911889:152315..153967 | Clytia hemisphaerica | exon |
| TCONS_00070771-exon-scaffold_58-1510915933:152315..153967 | TCONS_00070771-exon-scaffold_58-1510915933:152315..153967 | Clytia hemisphaerica | exon |
| TCONS_00070771-exon-scaffold_58-1575043694:152315..153967 | TCONS_00070771-exon-scaffold_58-1575043694:152315..153967 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_58 | supercontig | scaffold_58:151187..153967 + |
Blast
The following BLAST results are available for this feature:
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