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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070769 ID=TCONS_00070769|Name=TCONS_00070769|organism=Clytia hemisphaerica|type=transcript|length=191bp
CACCGTTACAGGAAAATTGATTGGAATTTTCTTGTGGATATTGAACAACA
TGAGAACAAAAACTACGAGAAGGATAAACCATGGAATAAGTGTTGTAGCC
AAATAAAATCCACTTCCTccttcaaaatcattttccacAGTCCAATGTAC
TTCTCCTCTCCAGCCTGCCATTATGCACCAtgacaaaaata Run BLAST on NCBI transcript from alignment at scaffold_58:120306..124937+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070769 ID=TCONS_00070769|Name=TCONS_00070769|organism=Clytia hemisphaerica|type=transcript|length=4632bp|location=Sequence derived from alignment at scaffold_58:120306..124937+ (Clytia hemisphaerica)
CACCGTTACAGGAAAATTGATTGGAATTTTCTTGTGGATATTGAACAACA
TGAGAACAAAAACAACGAGAAGGATAAACCATGGAATAAGTGTTGTGGCC
AAATAAAATCCACTTCCTCCTTCAAAGTGAATTTCCACAGTCCAATGTAC
TTCCCCTCTCCAGCCTGCCATTATGCACCATGACAAAAATAACAGAACCT
GagaaatcaaatttgaaaatcttcaaCAGAATTCAAACTTCTAAGTGTAC
TGCTGTGTGAACTGGAAATTATGGTCACTCTCTATAAGAATTTCAATGAG
GACACCAGCTTTCCCTGGGGGGAGGTGGGTACTTAGATGGTGCCGCATAT
GTGCGAGCAATtagacacccctttctcacagacctggtgggACCCCCTCA
CTGCAAACTATGGAAATCAAACTCCCAGCGGAAATTCCCAAaattcctac
cgggtctgtgaaaagggtcctttttacaccctcgaaagtccccCACAGCG
GTACAAAGCCATATAGAAATAAGCTCTGCATCGTTGATATTTCCAAGGAG
AATAATCACCTTGATGATTTTAAACCTGCGTTCAGATCTTTTGTATCTCT
CTTGATTTTTAGTCTGCCTTTTTTTGctattgttgtcattttttccCATc
ttcttattacatcaatcttcaggtaggtccattcagcctGTAGCTTGTTC
GtcacatttttcttttccattttccaagtcttttatcctttagattaTTC
TCCTTAGAAATATCTTATAACACCCGGCTTTGGAACATAGAAGTGAtaga
aaatttctatcgaaatcccaatggggaaaTTCTATagttttaaagctaaa
aaagtccaatggggatggttttggagtgcaaatttttacattgaatttcg
aatagagataaaatcaaagtcaatcccAACTGGGATgcgattttggcaaa
attttctaGTGTCcagcaggtctgtgacacaggggtgtctcatAGTAGCG
TCAATGCGCActgagaaatttttaaaataggtAAGTGTCCAGATACTGTA
TAGGCTTTAGGACCTTGAGAGCAAATGaacatttgattaaaaaaatatat
gaagTCAAGATTTTTATAGTCATTTTTTGAAGTCAAATCCTCATAGCCCT
TTCGatcattcaaaatattttctgttaGAATCGTCAAAATTGAGactaat
gttcttatataaaaaagacttaCAAGATTGATGACGAGTAACAAACCAGG
AGGTGTTCTTATGAAGCCAGGGTTCAATCTGATACCTTCATCACTTGATC
CTTGTGTCGGTTGAGGGTCAACATCGTAGGGTGGCGGTGCTTCGGCCATT
TTCACTATTGGTGTAGGTTATCTCGGgttgtatttttgtaaatttactTC
TAAATATATTGTTAAAGTAATTTTTCGTCTTTTGTACATTAAAGAGGCAT
GAGTCTAAATTGCTATAGAGTGGACATCCAATGCTTGCATCCATGAAGGT
TAAGGGGTCTAATTTAAAATCGAACCTGTGACGTGGGTTTTATGAGATTG
GAAGTCACAGACCTATCCTGAATATCCAAGCAGTAAACCTTTGAGTTAAA
AACTGGGTGCAAATTGATAGGCTGTTGACAAATTCTCATAGTCAAAATCT
TATACCtcgtctttttttctaaaaggttCATGAAAACACCCCAGTCTCAC
AACCCCAGTGGAACattttttctcagtggggataaaaggttctaaggtta
aaaaattctgtggcaatggttttgaagtgcaatttttgaacattgaattt
cgaatggggatgaaattctaagttattttcccaccgggaacgaaattttt
gtcaatctttccaGTAGTTCTGGGCTCCCGGCGGGTCTGTGACATAGGGG
TATATGACTGGGGACTGTACAGTGCCATGTTCATCAGTCAAATTAAAAAG
TGTTGCAATTTCTCTGCAGGTTGGGCTACAATAGAAGATTGTGCATCACT
ACAGGTGAATATTGTAAAATTTTGGCGTTATAGGAAGTTTTAAAGATATG
TCAGCcatattaattttcaaaatgaattaATATAGAACATCCAGTCCTTG
GTTTGAAAAGTTCCCTCTATCCTTCACCTTTACCTATAATGCCATAGatt
cattttcaataataacaCAATACTTCTCATACATAGCTCCACTCAAACTT
GCTTGATCAACTCAATCGCATTTCAAGTAAGAAAAATATCATCCCACTTT
TTAATGCCAGAAGTATGTACAGCAATTAGCAAAGGTAATTAACTTAAATC
TTGTCAACAGATCTAATTAAACAAAACAATGTAAGAACATATAGTTTAAT
GGTATCTTTTAACGAcatctttttttctaagaaacctTAAATTGAAAATG
CCATTTCAAGCACTTTTATAAACGTCAAAAATTACCCTTCCCAATTCTCC
GGTTTGAGGGGACCAACTTAGAAAACACTCAGAAATAGTAGCCCAATTTC
AAATGTGATGTCGATGAAGTTAAGTAAATGTAACGCTAAGGGTAAATCTG
GTTATAAATTCGTGCTGGCACATAATGTTTGCgaaaaaaaagtgtgaaaa
ttttttcattttttaagtgACTAAATACTACTTTATCTGGGACAAGGGTG
TTCAAAATATTACAGCTTTCATCCCGTCCTGCGCTGGtactgaaaattta
agaattggGCCCTTGAAAAATAGCTGGCAATTAAAGAGATAAATTTTTCG
TCAATACGAAAGATTAGCCTTGTCTTGCATGTTTACAATTTCCCTAACAA
TAATTTGTTAAATATACAATATTAATTGATTGAAGTGAATTTTCGAACGA
ACACAACGACTGCataaatacaacaaaaagaTTTCCTAAATAAAATGTGC
CCTAAATTTACAAAATCTACGACTAATGTGTCCATTTGAATCATTTCTAA
AGATTTTTGTGTTACTGATTACAAAATGTCTTTAAATTTCAAACACcatc
ttctttttatttcttctCATTCAAATTTTGTTCTCAAAAAAAATATGAAC
TCATAGTATTGTCATAAAATCTGGTGATTGATTTTTAGTGTTGGATTTTC
ATGCTCAAGGACTTCTCCATTCTCGGAAGTGTAAAAATGCTTGAACTCCT
AATCCAACCACCGAGAAAATTCCAAAAGCCTGTAAAAGAAAAAGTTATTC
ATAATTTAACATGTTTGCTCAAAAAGCccaaccatagatttataatgccc
gaaggactagatggcgtacttttgctgaaagtgtcccgtggttaggtagg
aaattctACCTAAGTcgcgtgacattacaatagaatttcagcgcttgacc
aataagaagctttcgtgggttttcgaaaacaatagcaacaatatttttgc
cgatattaacttttttttgcctgcgatggcttaaagcctgACAATTAGCC
CTTTGagttttataaatctatgagcCCAACCAGCCTGTTTCAGGGATATT
TTGATATTGTGGTCTAAACATCATAAACCtgagaaaatttcagaaatatt
taaaatagaATTTGTATTGTTAGATAggtcagccccggtgaaaaAGAGAA
ATGTCACTATTTCATTGCGTTCTACCTAGAATTGCATTGGGAAAGACAAT
ATAACTTTCTACTATACTTTGAGCTAAACAATTGAAAAATCCCCACATAA
AAGATAGTTAGAAAATGGACAGCTAAGATCCCTTAGAGTCTAAAATAGAT
GGATGCCCCCGGGGGGGGAGGGGATTACTAGGGTTGTGACTTctaaaaaa
ggcacccttaggCGACACATATCGTACCCTACATTTGCTTACTGTAAGTA
CCCCACCCCCTGGGAATTGATTTAGTGGAtgtaatgaaatttaaaatcca
GTTCAGACTTACACAAGCAGCTCCGAGATGATTACAAGCATAAACTTCAC
ACAAGGAACTATGACCATTCCATTTATCAGCTTTCGCTCCAACAATACAC
GAAGCAATAAACAGTAATACTGCCCATATAACGCAGTTAAGCATTAGCTA
AAGAAAGGAGGAAAATAAAAGGATTCGAAAAATCATAGCATTAGAGTCTC
TAGAGATTGTTTGTGTAAAAAAACCGCGAGTCTTTAAAATTCTAGAAAGG
TTGGAAGGgttgagttttaactctgagatTTAACAATCCAacgatctgag
gatccaaaagttcaaagatggtccaataaggctcagattataacctggaa
gtctataaactcCTTCCAAATGGAAATATTTGATTGTATTTAACAGATAG
CCCAAAAGCAACTTTCTCGCACGaacttaaaatttcgaaaaacgaggaaa
taggCAAAATTCTCGATGTTGATTGTAGCCGGATGCCTCTACGCTTTCTC
TCTCTGTCTCTTTGTCTGCTAAGCAAAAATGAACTGAACCTCACCGTTAT
GGGAAAATTGATTGGAATTTTCGTGTGGATATTGAACAACATGAGAACAA
AAACTACGAGAAGGATAAACCATGGAATAAGTGTTGTAGCCAAATAAAAT
CCACTTCCTccttcaaaatcattttccacAGTCCAATGTACTTCTCCTCT
CCAGCCTGCCATTATGCACCAtgacaaaaata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070769-exon-scaffold_58-1491911889:120306..120354 | TCONS_00070769-exon-scaffold_58-1491911889:120306..120354 | Clytia hemisphaerica | exon |
| TCONS_00070769-exon-scaffold_58-1510915933:120306..120354 | TCONS_00070769-exon-scaffold_58-1510915933:120306..120354 | Clytia hemisphaerica | exon |
| TCONS_00070769-exon-scaffold_58-1575043694:120306..120354 | TCONS_00070769-exon-scaffold_58-1575043694:120306..120354 | Clytia hemisphaerica | exon |
| TCONS_00070769-exon-scaffold_58-1491911889:124796..124937 | TCONS_00070769-exon-scaffold_58-1491911889:124796..124937 | Clytia hemisphaerica | exon |
| TCONS_00070769-exon-scaffold_58-1510915933:124796..124937 | TCONS_00070769-exon-scaffold_58-1510915933:124796..124937 | Clytia hemisphaerica | exon |
| TCONS_00070769-exon-scaffold_58-1575043694:124796..124937 | TCONS_00070769-exon-scaffold_58-1575043694:124796..124937 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:120306..124937 + |
Blast
The following BLAST results are available for this feature:
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