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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070764 ID=TCONS_00070764|Name=TCONS_00070764|organism=Clytia hemisphaerica|type=transcript|length=1565bp
ACCTCATTCTCTTGACAGGGAATCTTCCTCGCAATATTTCTCGTTTGTAT
AAGTAGCAATCGATGAACATTGAAATCGGAGTCTGCCATTCCGTGAAGTT
GACCTCTTCGGGTGCCGGTAGGGCCCCGAACGTACTAATCGGGGTCATGT
CTACTAACTGAAAGACGTCGGCGTAAACACCACCGTCATCGGTCTCGGCA
ATTTCGGGCTCCGAATCATCCGATTCTTCATCTATGCTCGCTTCAGCAGC
GTACAGTTCAGGATGGTTCTCAAAGTTAACATCCATTTCTTGTATCTCTT
CCATTCTCTTTTGAAATTCCTCGGCCTGCCGTTGTACCTTCATAGTGGCA
GACCGTCTCCGTGCCATCTGGGTTTCGAGTGATTTCGACAGTGCAAGTCT
TTCAACTTCTAAAGCCCTCTTCAATTGTCTAGCGGCACGACGTTGTTCTA
GTTCTCTCGCATTTGTCGAGTCTTCACAATAGAAACCTTCGTTTCGATCG
ACGTctttcaaaatatcataaacaaCATACTCGAGTCCTTCGTCTGTGTT
TTGACTTGGGTTTACTTTCGTCCAACTACGTTTTGGTGTCGCGGTGGCAC
TTTCTTTCGAGTTGGAACACTCTCCTAAGGATACGGTGGCATTTTCTGTA
TCACTTTTGGATTCCCCTTCTGAACTTTCACGGTTCTGTGGTATTGACTC
CTCAGATTTGGTTTGGTCTTGGTCAACACTATTCTGACTTTGCTTTGGTG
GTAGTGCGGTGGCATTTTCTTTGGTGATGTTGGATTTTCCTACTGGAGTC
TCTTGGTTAAGTGGCACTTCATCCTGTTGGACAACGCTGTCACCAGCATT
GACATTATCGTCTCCTTTTTTCTTGGTGTTGTTTATGGAATTGAGAATAT
CTTCCTCGACAACTTTTTTCAGCACTTTATCTATAATTGTTTTCACTGTC
AGATTTAGAAGCTCTTCGTCACAGTTCAAACCTTCGACATCTATTGGACT
TGGAGAAGTCATTGTCGCCGTAATAACAATCTTGTTGTTTACACACTGAA
CTTCTTTTGAGGTATGATGTTTCGCCGTAGTATCCTCTGAATGGTATGGG
TTTGACATAGATGCGTAGCCGTCCATCATATTATTTGCAGCAGCAAGTCC
TACTTCATCGTTAATTACGCGTGCCAATATCTTGCTAGCAAGAAGTTTCG
CCTCCATATCGATTTCCGTTTCGACTTCCCGGATTGACTGTTCTAAAACT
AAATCAGATATCCGTCTCGCCGTAGTAACGATTTCTCCTTTTTCGCTGAC
TGATTGTTGTAAAACCTCTTCTTCAGAAAGTCTTTTCGCCGTCGTATCAA
GCCCTTCTCTAAACGAATCTCCTATTACTTTGGCAGCCAAACGGTCAATG
ATTTCTTCCTCTTCCCTTTCGGATTGAAGTACGGCGTCTCCGGCTAGCCG
TTTCGCCGTCATGTCCAAAGCTCCCGCGTTCTCcatatttttagaaaacc
tcAAATCCTCTGCAAAGCCATACGATTTGAAACACAAAACAAACAATACA
ACGCTCCAATGAATC Run BLAST on NCBI transcript from alignment at scaffold_58:12629..14276+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070764 ID=TCONS_00070764|Name=TCONS_00070764|organism=Clytia hemisphaerica|type=transcript|length=1648bp|location=Sequence derived from alignment at scaffold_58:12629..14276+ (Clytia hemisphaerica)
ACCTCATTCTCTTGACAGGGAATCTTCCTCGCAATATTTCTCGTTTGTAT
AAGTAGCAATCGATGAACATTGAAATCGGAGTCTGCCATTCCGTGAAGTT
GACCTCTTCGGGTGCCGGTAGGGCCCCGAACGTACTAATCGGGGTCATGT
CTACTAACTGAAAGACGTCGGCGTAAACACCACCGTCATCGGTCTCGGCA
ATTTCGGGCTCCGAATCATCCGATTCTTCATCTATGCTCGCTTCAGCAGC
GTACAGTTCAGGATGGTTCTCAAAGTTAACATCCATTTCTTGTATCTCTT
CCATTCTCTTTTGAAATTCCTCGGCCTGCCGTTGTACCTTCATAGTGGCA
GACCGTCTCCGTGCCATCTGGGTTTCGAGTGATTTCGACAGTGCAAGTCT
TTCAACTTCTAAAGCCCTCTTCAATTGTCTAGCGGCACGACGTTGTTCTA
GTTCTCTCGCATTTGTCGAGTCTTCACAATAGAAACCTTCGTTTCGATCG
ACGTctttcaaaatatcataaacaaCATACTCGAGTCCTTCGTCTGTGTT
TTGACTTGGGTTTACTTTCGTCCAACTACGTTTTGGTGTTGCGGTGGCAC
TTTCTTTTGAGTTGGAACAATCTCCTAAGGATACGGTGGTNGGTTTACTT
TCGTCCAACTACGTTTTGGTGTCGCGGTGGCACTTTCTTTCGAGTTGGAA
CACTCTCCTAAGGATACGGTGGCATTTTCTGTATCACTTTTGGATTCCCC
TTCTGAACTTTCACGGTTCTGTGGTATTGACTCCTCAGATTTGGTTTGGT
CTTGGTCAACACTATTCTGACTTTGCTTTGGTGGTAGTGCGGTGGCATTT
TCTTTGGTGATGTTGGATTTTCCTACTGGAGTCTCTTGGTTAAGTGGCAC
TTCATCCTGTTGGACAACGCTGTCACCAGCATTGACATTATCGTCTCCTT
TTTTCTTGGTGTTGTTTATGGAATTGAGAATATCTTCCTCGACAACTTTT
TTCAGCACTTTATCTATAATTGTTTTCACTGTCAGATTTAGAAGCTCTTC
GTCACAGTTCAAACCTTCGACATCTATTGGACTTGGAGAAGTCATTGTCG
CCGTAATAACAATCTTGTTGTTTACACACTGAACTTCTTTTGAGGTATGA
TGTTTCGCCGTAGTATCCTCTGAATGGTATGGGTTTGACATAGATGCGTA
GCCGTCCATCATATTATTTGCAGCAGCAAGTCCTACTTCATCGTTAATTA
CGCGTGCCAATATCTTGCTAGCAAGAAGTTTCGCCTCCATATCGATTTCC
GTTTCGACTTCCCGGATTGACTGTTCTAAAACTAAATCAGATATCCGTCT
CGCCGTAGTAACGATTTCTCCTTTTTCGCTGACTGATTGTTGTAAAACCT
CTTCTTCAGAAAGTCTTTTCGCCGTCGTATCAAGCCCTTCTCTAAACGAA
TCTCCTATTACTTTGGCAGCCAAACGGTCAATGATTTCTTCCTCTTCCCT
TTCGGATTGAAGTACGGCGTCTCCGGCTAGCCGTTTCGCCGTCATGTCCA
AAGCTCCCGCGTTCTCcatatttttagaaaacctcAAATCCTCTGCAAAG
CCATACGATTTGAAACACAAAACAAACAATACAACGCTCCAATGAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070764-exon-scaffold_58-1491911889:12629..13187 | TCONS_00070764-exon-scaffold_58-1491911889:12629..13187 | Clytia hemisphaerica | exon |
| TCONS_00070764-exon-scaffold_58-1510915933:12629..13187 | TCONS_00070764-exon-scaffold_58-1510915933:12629..13187 | Clytia hemisphaerica | exon |
| TCONS_00070764-exon-scaffold_58-1575043694:12629..13187 | TCONS_00070764-exon-scaffold_58-1575043694:12629..13187 | Clytia hemisphaerica | exon |
| TCONS_00070764-exon-scaffold_58-1491911889:13271..14276 | TCONS_00070764-exon-scaffold_58-1491911889:13271..14276 | Clytia hemisphaerica | exon |
| TCONS_00070764-exon-scaffold_58-1510915933:13271..14276 | TCONS_00070764-exon-scaffold_58-1510915933:13271..14276 | Clytia hemisphaerica | exon |
| TCONS_00070764-exon-scaffold_58-1575043694:13271..14276 | TCONS_00070764-exon-scaffold_58-1575043694:13271..14276 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:12629..14276 + |
Blast
The following BLAST results are available for this feature:
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