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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070750 ID=TCONS_00070750|Name=TCONS_00070750|organism=Clytia hemisphaerica|type=transcript|length=2548bp
TATCTAACACTGATTACCAAGCATGATCAAATATTTTGCTCTAAAACCAC
TCATTGATTGacgtttcttcttctttttttcagaatAAACACTACATAAT
CAAAAAGTGTGGTATACTGCTTTTAAAACAAACTGAAGAATAACAAATAA
ACAACAATCTTCACCAAACACAAGAATCAAAAACAATCTAAGAAAAAGCA
TTAAACGAGAACACATCTATTAATTGATCGTAAACTTATTCCAGAACGCG
CAGAGACAaacattggaaaaattggaaacCATAGAGTCAAATAAACTAAC
GATCTTCAAATTGACGCACACAcgaattaaaatttgaaaatagcaTATCT
ATAAACCTCTACATCATCCAGAGAACGCTGTATCAGTGCTAATTAGAAAA
CGTTCATTACCAAACGAGAAGATTACGACACTATTCTAAGTCCAACTTTT
GGTTCTCCCAATTCAGCAAAGAAAGCATCAATTCCAACaggaaattttga
ctttttaaagaaatttaatgGAACCATGAATTGACAAGTACAGTAGTTCC
ATTGTAGTGAACTTTGGAAATTCATAGAGATATTGATAACGTTTATCTGA
CCACGTGGGAAACACCAAAAAAGGAAAGATGCCAAAATTCGATTACTTAG
AAGTAATGAACAATGAAGAATTTCACTTACCAACATCCAAGGATATCACC
GATTTCTTTGCCCGCAAACCGGAACTGGACGAAGTTCCGTATACTTTTAT
TGAGAATCCTGCGGAATGTTGTTGTTACGTCCGATGTCATTTGAGTGACC
TCAAAGAAGAAATTTGTCAATATATACATCTGACAAATAACCGGTACCGG
ATAAAATTCCGTTGTATTATTATTCTACAGGGTTTCCGGATTAGATGCCT
ACCCGGGTTTTCATTACCGCTTCCAAANCCGGTACCGAATAAAATTCCGT
TGTATTATTATTCTACAGGGTTTCCGGATTAGATGCCTACCCGGGTTTTC
ATTACCGCTTCCAAAGGCTAATGACACTGCAGCAAATAGCCTAGAATCAC
CGAAAGTTTATGTTAAGCTGAAAGCTGTAGCCTACGATAGTGGCTTTGTT
ATTCAACTTCAATCGATTACAGAGAAAAGAGAGAAACAAATTTCGAGAAC
TGATTTAGGGAGTGTTTTCGCACTTGGACCTTCAGATACTGTCAGAGGTG
CCTTAACTACGCCATGTTGTGGAGTTATGAGTGTGTTAGGAAAACAAGCT
GATATAGACGATGAAGGGCTTGTCACCCTGAGTACAAAATTAAACGGGCG
GAAGGTTGAAGTTCCAAGTCATCCCTCACTTGTGACAGAATGGAGCAATG
AGGATCTACACCCGAACACTGTTTTAtatgtatttttaaagaaaattcgt
ATCGAATCATACGAGAGGATGCAAATATGGAATTTACAGTATTTTGCTCC
CGGTAAATGTAAAAAGTTAGACGATTGTGATTGTTTATTGTGTAAACAGT
ACCTTACAGTGACAACTTCGTTCAATAAGGGTCTACTTACatccaaaaca
ccaaaaaacgACGTTCATTTTATAAGAAATGGGTTATCGTTAAGTTGCAA
ATCAGAAAATGTTATATATTTGGTCACATGTAAAAAATGCGGGTTACAGT
ACGTCGGAAAGTCAAAGTATAAAATGAGGACCAGATTTCAAGAACATTTG
ACCGATTTTGAGAAGTCAAAGAAAGACTTGATGGATGGTAAACTTTTATA
TAACCATTTCAGAGACCATTCACCTATAGATCCTTTGGAGAATCTATCAC
TGGTGATTATAGACCAGATTACAAACAAACATTCGATTAGCATTAATAAG
TTACGCCAGTATTGGATTAATAGATTGGATACATTTTACCGTGGCTTGAA
TGCAAAGACGGGTTCCTCTACAACACGAAGTCAGCAGTATACTCCAAAAA
CGAACTTATTACAAGACGACAATAATAATATGATTGTGAAACAGTTTCTA
GAGGGCCTGGAAACTAAATAAGCTAACGATTATCATCATGGTACATAAGA
CTAGGGTATTTGTTTGAGGTTGACGGATACCAGGGCCAAAGTTTCTATAA
TTCTTTTTAATATTTCAAAGCTTTTAAGgactacttagactacacaatat
attggtgagCAAAATTAGTCTTGATTATTCGGCAATAAAGTTTATAGATC
GTAATGTACGGAATATGCAACATgtgctctattataaaaaggaatttttt
tctttaaacaatccccctttattgttggaCTATTGTAAatcaagctgaca
atatattgcagacaccttttcaatatattgctaGCATTCATCAatatatt
atcaaaatattgtctgacaatatattgtgcagtgtatgtagccctttgaG
CTTACAATCAAGGAATcaaagaatttctatcccattgGGTTTtggataga
aatttttatccccgccgTGGCTAAAGTTCCACCGtggctgtgagacagga
gtgtttGATGGGTTTAATGGcctgttatctttttatttacaaGCAGTA Run BLAST on NCBI protein sequence of TCONS_00070750-protein >TCONS_00070750-protein ID=TCONS_00070750-protein|Name=TCONS_00070750-protein|organism=Clytia hemisphaerica|type=polypeptide|length=264bp
MSVLGKQADIDDEGLVTLSTKLNGRKVEVPSHPSLVTEWSNEDLHPNTVL
YVFLKKIRIESYERMQIWNLQYFAPGKCKKLDDCDCLLCKQYLTVTTSFN
KGLLTSKTPKNDVHFIRNGLSLSCKSENVIYLVTCKKCGLQYVGKSKYKM
RTRFQEHLTDFEKSKKDLMDGKLLYNHFRDHSPIDPLENLSLVIIDQITN
KHSISINKLRQYWINRLDTFYRGLNAKTGSSTTRSQQYTPKTNLLQDDNN
NMIVKQFLEGLETK Run BLAST on NCBI transcript from alignment at scaffold_57:660656..663203 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070750 ID=TCONS_00070750|Name=TCONS_00070750|organism=Clytia hemisphaerica|type=transcript|length=2548bp|location=Sequence derived from alignment at scaffold_57:660656..663203 (Clytia hemisphaerica)
TACTGCttgtaaataaaaagataacaggCCATTAAACCCATCaaacactc
ctgtctcacagccaCGGTGGAACTTTAGCCAcggcggggataaaaatttc
tatccaAAACCcaatgggatagaaattctttgATTCCTTGATTGTAAGCt
caaagggctacatacactgcacaatatattgtcagacaatattttgataa
tatatTGATGAATGCtagcaatatattgaaaaggtgtctgcaatatattg
tcagcttgatTTACAATAGtccaacaataaagggggattgtttaaagaaa
aaaattcctttttataatagagcacATGTTGCATATTCCGTACATTACGA
TCTATAAACTTTATTGCCGAATAATCAAGACTAATTTTGctcaccaatat
attgtgtagtctaagtagtcCTTAAAAGCTTTGAAATATTAAAAAGAATT
ATAGAAACTTTGGCCCTGGTATCCGTCAACCTCAAACAAATACCCTAGTC
TTATGTACCATGATGATAATCGTTAGCTTATTTAGTTTCCAGGCCCTCTA
GAAACTGTTTCACAATCATATTATTATTGTCGTCTTGTAATAAGTTCGTT
TTTGGAGTATACTGCTGACTTCGTGTTGTAGAGGAACCCGTCTTTGCATT
CAAGCCACGGTAAAATGTATCCAATCTATTAATCCAATACTGGCGTAACT
TATTAATGCTAATCGAATGTTTGTTTGTAATCTGGTCTATAATCACCAGT
GATAGATTCTCCAAAGGATCTATAGGTGAATGGTCTCTGAAATGGTTATA
TAAAAGTTTACCATCCATCAAGTCTTTCTTTGACTTCTCAAAATCGGTCA
AATGTTCTTGAAATCTGGTCCTCATTTTATACTTTGACTTTCCGACGTAC
TGTAACCCGCATTTTTTACATGTGACCAAATATATAACATTTTCTGATTT
GCAACTTAACGATAACCCATTTCTTATAAAATGAACGTcgttttttggtg
ttttggatGTAAGTAGACCCTTATTGAACGAAGTTGTCACTGTAAGGTAC
TGTTTACACAATAAACAATCACAATCGTCTAACTTTTTACATTTACCGGG
AGCAAAATACTGTAAATTCCATATTTGCATCCTCTCGTATGATTCGATac
gaattttctttaaaaatacataTAAAACAGTGTTCGGGTGTAGATCCTCA
TTGCTCCATTCTGTCACAAGTGAGGGATGACTTGGAACTTCAACCTTCCG
CCCGTTTAATTTTGTACTCAGGGTGACAAGCCCTTCATCGTCTATATCAG
CTTGTTTTCCTAACACACTCATAACTCCACAACATGGCGTAGTTAAGGCA
CCTCTGACAGTATCTGAAGGTCCAAGTGCGAAAACACTCCCTAAATCAGT
TCTCGAAATTTGTTTCTCTCTTTTCTCTGTAATCGATTGAAGTTGAATAA
CAAAGCCACTATCGTAGGCTACAGCTTTCAGCTTAACATAAACTTTCGGT
GATTCTAGGCTATTTGCTGCAGTGTCATTAGCCTTTGGAAGCGGTAATGA
AAACCCGGGTAGGCATCTAATCCGGAAACCCTGTAGAATAATAATACAAC
GGAATTTTATTCGGTACCGGNTTTGGAAGCGGTAATGAAAACCCGGGTAG
GCATCTAATCCGGAAACCCTGTAGAATAATAATACAACGGAATTTTATCC
GGTACCGGTTATTTGTCAGATGTATATATTGACAAATTTCTTCTTTGAGG
TCACTCAAATGACATCGGACGTAACAACAACATTCCGCAGGATTCTCAAT
AAAAGTATACGGAACTTCGTCCAGTTCCGGTTTGCGGGCAAAGAAATCGG
TGATATCCTTGGATGTTGGTAAGTGAAATTCTTCATTGTTCATTACTTCT
AAGTAATCGAATTTTGGCATCTTTCCTTTTTTGGTGTTTCCCACGTGGTC
AGATAAACGTTATCAATATCTCTATGAATTTCCAAAGTTCACTACAATGG
AACTACTGTACTTGTCAATTCATGGTTCcattaaatttctttaaaaagtc
aaaatttcctGTTGGAATTGATGCTTTCTTTGCTGAATTGGGAGAACCAA
AAGTTGGACTTAGAATAGTGTCGTAATCTTCTCGTTTGGTAATGAACGTT
TTCTAATTAGCACTGATACAGCGTTCTCTGGATGATGTAGAGGTTTATAG
ATAtgctattttcaaattttaattcgTGTGTGCGTCAATTTGAAGATCGT
TAGTTTATTTGACTCTATGgtttccaatttttccaatgttTGTCTCTGCG
CGTTCTGGAATAAGTTTACGATCAATTAATAGATGTGTTCTCGTTTAATG
CTTTTTCTTAGATTGTTTTTGATTCTTGTGTTTGGTGAAGATTGTTGTTT
ATTTGTTATTCTTCAGTTTGTTTTAAAAGCAGTATACCACACTTTTTGAT
TATGTAGTGTTTattctgaaaaaaagaagaagaaacgtCAATCAATGAGT
GGTTTTAGAGCAAAATATTTGATCATGCTTGGTAATCAGTGTTAGATA Coding sequence (CDS) from alignment at scaffold_57:660656..663203 >TCONS_00070750 ID=TCONS_00070750|Name=TCONS_00070750|organism=Clytia hemisphaerica|type=CDS|length=795bp|location=Sequence derived from alignment at scaffold_57:660656..663203 (Clytia hemisphaerica)
TTATTTAGTTTCCAGGCCCTCTAGAAACTGTTTCACAATCATATTATTAT
TGTCGTCTTGTAATAAGTTCGTTTTTGGAGTATACTGCTGACTTCGTGTT
GTAGAGGAACCCGTCTTTGCATTCAAGCCACGGTAAAATGTATCCAATCT
ATTAATCCAATACTGGCGTAACTTATTAATGCTAATCGAATGTTTGTTTG
TAATCTGGTCTATAATCACCAGTGATAGATTCTCCAAAGGATCTATAGGT
GAATGGTCTCTGAAATGGTTATATAAAAGTTTACCATCCATCAAGTCTTT
CTTTGACTTCTCAAAATCGGTCAAATGTTCTTGAAATCTGGTCCTCATTT
TATACTTTGACTTTCCGACGTACTGTAACCCGCATTTTTTACATGTGACC
AAATATATAACATTTTCTGATTTGCAACTTAACGATAACCCATTTCTTAT
AAAATGAACGTcgttttttggtgttttggatGTAAGTAGACCCTTATTGA
ACGAAGTTGTCACTGTAAGGTACTGTTTACACAATAAACAATCACAATCG
TCTAACTTTTTACATTTACCGGGAGCAAAATACTGTAAATTCCATATTTG
CATCCTCTCGTATGATTCGATacgaattttctttaaaaatacataTAAAA
CAGTGTTCGGGTGTAGATCCTCATTGCTCCATTCTGTCACAAGTGAGGGA
TGACTTGGAACTTCAACCTTCCGCCCGTTTAATTTTGTACTCAGGGTGAC
AAGCCCTTCATCGTCTATATCAGCTTGTTTTCCTAACACACTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070750-exon-scaffold_57-1491911889:660656..663203 | TCONS_00070750-exon-scaffold_57-1491911889:660656..663203 | Clytia hemisphaerica | exon |
| TCONS_00070750-exon-scaffold_57-1510915933:660656..663203 | TCONS_00070750-exon-scaffold_57-1510915933:660656..663203 | Clytia hemisphaerica | exon |
| TCONS_00070750-exon-scaffold_57-1575043694:660656..663203 | TCONS_00070750-exon-scaffold_57-1575043694:660656..663203 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_57 | supercontig | scaffold_57:660656..663203 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000305 | GIY-YIG_SF |
Blast
The following BLAST results are available for this feature:
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