TCONS_00070732 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070732
Unique NameTCONS_00070732
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length584

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070732 ID=TCONS_00070732|Name=TCONS_00070732|organism=Clytia hemisphaerica|type=transcript|length=584bp
NTAACTTGCAAAGGATTGAATCTGTTTTCCAAAGTGATAGCTTCCCCATC
TTTTGTTTGCACGTTTTTACTTGTTCTCTTGggaatttgaaaaaactcaT
TAGCTTGTTCAAGATTATTGTTTTTAGATTGATTTGTAGGTAGAAAAGTG
TTTTTACGTGTGATCTCTTTGTTAGAGTTTGACACAGAGTTCTGATTTTG
TCCTTTTCCTTGTAAAAAAGTGCAACGATTTGTTTGAATAAGAGACTCAA
TGATAGTGTTCTTGTGTCGAATTTCCTCCTCTAAGAAAATAATGTGCCCT
TCCAATGTTGAAATGAATTTGTCCTTATAGTCACCTACTGTAGCTAAATT
TCTTTCGAAGCTGTCATTGAATGAGTACCTTGTATTTCTTGGTCTTGTTT
GTCTTTCTTTATTTAATTCTTCACGTATGTTTCTCAGGTCTGTCTTGATT
TTCTGTTGCTCCCCTTCCTGTACTTTTCTGTCAATATATTGAAATACATC
CTCATGTTCATCCTCATGTTCTTGCTGTGACTTTGTATTTTGAACGCCTT
CATTTTCTGCCATTATGACACGTGTGTACTGTGG
Run BLAST on NCBI

protein sequence of TCONS_00070732-protein

>TCONS_00070732-protein ID=TCONS_00070732-protein|Name=TCONS_00070732-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
PQYTRVIMAENEGVQNTKSQQEHEDEHEDVFQYIDRKVQEGEQQKIKTDL
RNIREELNKERQTRPRNTRYSFNDSFERNLATVGDYKDKFISTLEGHIIF
LEEEIRHKNTIIESLIQTNRCTFLQGKGQNQNSVSNSNKEITRKNTFLPT
NQSKNNNLEQANEFFQIPKRTSKNVQTKDGEAITLENRFNPLQV
Run BLAST on NCBI

transcript from alignment at scaffold_57:282228..282811

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070732 ID=TCONS_00070732|Name=TCONS_00070732|organism=Clytia hemisphaerica|type=transcript|length=584bp|location=Sequence derived from alignment at scaffold_57:282228..282811 (Clytia hemisphaerica)
CCACAGTACACACGTGTCATAATGGCAGAAAATGAAGGCGTTCAAAATAC
AAAGTCACAGCAAGAACATGAGGATGAACATGAGGATGTATTTCAATATA
TTGACAGAAAAGTACAGGAAGGGGAGCAACAGAAAATCAAGACAGACCTG
AGAAACATACGTGAAGAATTAAATAAAGAAAGACAAACAAGACCAAGAAA
TACAAGGTACTCATTCAATGACAGCTTCGAAAGAAATTTAGCTACAGTAG
GTGACTATAAGGACAAATTCATTTCAACATTGGAAGGGCACATTATTTTC
TTAGAGGAGGAAATTCGACACAAGAACACTATCATTGAGTCTCTTATTCA
AACAAATCGTTGCACTTTTTTACAAGGAAAAGGACAAAATCAGAACTCTG
TGTCAAACTCTAACAAAGAGATCACACGTAAAAACACTTTTCTACCTACA
AATCAATCTAAAAACAATAATCTTGAACAAGCTAAtgagttttttcaaat
tccCAAGAGAACAAGTAAAAACGTGCAAACAAAAGATGGGGAAGCTATCA
CTTTGGAAAACAGATTCAATCCTTTGCAAGTTAN

Coding sequence (CDS) from alignment at scaffold_57:282228..282811

>TCONS_00070732 ID=TCONS_00070732|Name=TCONS_00070732|organism=Clytia hemisphaerica|type=CDS|length=582bp|location=Sequence derived from alignment at scaffold_57:282228..282811 (Clytia hemisphaerica)
CCACAGTACACACGTGTCATAATGGCAGAAAATGAAGGCGTTCAAAATAC
AAAGTCACAGCAAGAACATGAGGATGAACATGAGGATGTATTTCAATATA
TTGACAGAAAAGTACAGGAAGGGGAGCAACAGAAAATCAAGACAGACCTG
AGAAACATACGTGAAGAATTAAATAAAGAAAGACAAACAAGACCAAGAAA
TACAAGGTACTCATTCAATGACAGCTTCGAAAGAAATTTAGCTACAGTAG
GTGACTATAAGGACAAATTCATTTCAACATTGGAAGGGCACATTATTTTC
TTAGAGGAGGAAATTCGACACAAGAACACTATCATTGAGTCTCTTATTCA
AACAAATCGTTGCACTTTTTTACAAGGAAAAGGACAAAATCAGAACTCTG
TGTCAAACTCTAACAAAGAGATCACACGTAAAAACACTTTTCTACCTACA
AATCAATCTAAAAACAATAATCTTGAACAAGCTAAtgagttttttcaaat
tccCAAGAGAACAAGTAAAAACGTGCAAACAAAAGATGGGGAAGCTATCA
CTTTGGAAAACAGATTCAATCCTTTGCAAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044008XLOC_044008Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070732-exon-scaffold_57-1491911889:282228..282811TCONS_00070732-exon-scaffold_57-1491911889:282228..282811Clytia hemisphaericaexon
TCONS_00070732-exon-scaffold_57-1510915933:282228..282811TCONS_00070732-exon-scaffold_57-1510915933:282228..282811Clytia hemisphaericaexon
TCONS_00070732-exon-scaffold_57-1575043694:282228..282811TCONS_00070732-exon-scaffold_57-1575043694:282228..282811Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070732-proteinTCONS_00070732-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:282228..282811 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.419164	0.106467	0.618743	0.165125	0.901999	1.109	6.20326	6.2629	1.50912	3.16002	1.26366	1.84878	1.66373	0.653434	0.698375	0.709565	0.819605	0.931411	0.804557	2.26786	3.49268	4.09261	1.99482	4.14253	2.74254	5.71119	4.30421	1.61025	4.45074	3.15657
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070732 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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