TCONS_00070722 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070722
Unique NameTCONS_00070722
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1571

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070722 ID=TCONS_00070722|Name=TCONS_00070722|organism=Clytia hemisphaerica|type=transcript|length=1571bp
GCGCAAGtcataaaattgcaactttttaagaaaaatgttGGATATCATGG
TGGGATGAAGTTTGATCCTCGTCAAACTTTTCACCCAACATATTTTAtga
gattgacgtcacttttatgttggatcaaatgttggatgcatttgcgccgg
cctttactccaacaacaaaaaagatgGGGGTTTTGAATAAGCATGATGGG
TGGAAAGAATCTTCTTGGAATGGAATAAAGTTTCCCATTTAGAAGCAAAG
TTAAAGGATAAATTACAATCATTGAACTACATTGTGTACATAAAACACTC
CACTTATAAGAATTAGATTTTACAATAATTTCAACATATCAGGAAATTTC
CCCTTCTAAATCAATCCTTTAATCCTTTAAACCATTATTTTCATCCAGCG
TTATATTGTGAACAGAATTCAGATGCTTTATTGAGCCTTCTTTTGTTGTA
AAAGATTTTCCACATTCCTTACATTTAAACGGTTTAATTCCTTCATGTGT
AATCATGTGGTGTCGTTCAAGATAATCCTTACGTggaaatgttttaccac
acacCTCACAGTTGAATAGAGTGCCTTCATGCGTAACCTGACGATGACGT
CTAAGATAATCCATCCTTGAAAAAGCTTTCCCACAATCACAACAGTGGTG
TAAAATTCCTTTGTGAACTGCATCGACATGCCTCTTAAGGTCATTTTTCT
CGCTGTAACACATGCTACATTCTTCACAATGAAATTTATTGAATCCTTTG
TGGACCTTTTTAATGTGACATTGTAGGGTGCGTTTATGAACATAGCTCTT
TCCACATTCATTACATTTATGAGGCTTTTCTTCATGAACTCTTTGATGAA
TTGTGAGGCTTTCTAACAGTCTAAATATCTTACCACATTTCTTACACTCA
AAAGGTCGTAAATCTTTGTGAACTTCATTTTGGTGTTCCTCAATTTTGTC
AAATGGAATGAACTCACCACAATCTTTACATTTCTCAGAAGTCATCTGCA
GAATCTTGTAATTTGGTTTAGGTTGATTTGgcttgaagaaaaatttgttt
ttctcattttcaccgATCTCAATATTCTTGAGAAAGCTTTCTAGCTGCAA
ACAACAAGTGCCAATAACTTGGTCACCTTTTCTGATGCTAAATGAAAATT
CTATTGGGATATCTGATTCTCTAGTTCCCTCAGCATGTTCTTTGACAAAC
aggttttcaaacaaaaaatccATTTTTGTAGATAATATAatcctaaaaaa
acaaaattttattacACAGGGTTAATCGAAGAACACACAGATATTTTGTT
CACAAAGGTAAATTTCATGCAATCAAATTCTAGACTGAAAGAAAAGAAGT
AAAATATTAAGAGATGTAAAATCTTTACCACATCCCTGTCATTCACCTAG
TGTAAATCCAGATCGTGCTGGGTcgcaaaatttggattttaagaAGCCAC
CGGATTCAAACTCAATTTCAACACGAGATACTTATCATCCACCACAATAA
ATTACTCCATTTTGAATTAGATACACTTTCAATGATCCACATATATTTCA
ggttcactttttttctttttt
Run BLAST on NCBI

protein sequence of TCONS_00070722-protein

>TCONS_00070722-protein ID=TCONS_00070722-protein|Name=TCONS_00070722-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
MDFLFENLFVKEHAEGTRESDIPIEFSFSIRKGDQVIGTCCLQLESFLKN
IEIGENEKNKFFFKPNQPKPNYKILQMTSEKCKDCGEFIPFDKIEEHQNE
VHKDLRPFECKKCGKIFRLLESLTIHQRVHEEKPHKCNECGKSYVHKRTL
QCHIKKVHKGFNKFHCEECSMCYSEKNDLKRHVDAVHKGILHHCCDCGKA
FSRMDYLRRHRQVTHEGTLFNCEVCGKTFPRKDYLERHHMITHEGIKPFK
CKECGKSFTTKEGSIKHLNSVHNITLDENNGLKD
Run BLAST on NCBI

transcript from alignment at scaffold_57:55918..57488

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070722 ID=TCONS_00070722|Name=TCONS_00070722|organism=Clytia hemisphaerica|type=transcript|length=1571bp|location=Sequence derived from alignment at scaffold_57:55918..57488 (Clytia hemisphaerica)
aaaaaagaaaaaaagtgaaccTGAAATATATGTGGATCATTGAAAGTGTA
TCTAATTCAAAATGGAGTAATTTATTGTGGTGGATGATAAGTATCTCGTG
TTGAAATTGAGTTTGAATCCGGTGGCTtcttaaaatccaaattttgcgAC
CCAGCACGATCTGGATTTACACTAGGTGAATGACAGGGATGTGGTAAAGA
TTTTACATCTCTTAATATTTTACTTCTTTTCTTTCAGTCTAGAATTTGAT
TGCATGAAATTTACCTTTGTGAACAAAATATCTGTGTGTTCTTCGATTAA
CCCTGTgtaataaaattttgtttttttaggatTATATTATCTACAAAAAT
ggattttttgtttgaaaacctGTTTGTCAAAGAACATGCTGAGGGAACTA
GAGAATCAGATATCCCAATAGAATTTTCATTTAGCATCAGAAAAGGTGAC
CAAGTTATTGGCACTTGTTGTTTGCAGCTAGAAAGCTTTCTCAAGAATAT
TGAGATcggtgaaaatgagaaaaacaaatttttcttcaagcCAAATCAAC
CTAAACCAAATTACAAGATTCTGCAGATGACTTCTGAGAAATGTAAAGAT
TGTGGTGAGTTCATTCCATTTGACAAAATTGAGGAACACCAAAATGAAGT
TCACAAAGATTTACGACCTTTTGAGTGTAAGAAATGTGGTAAGATATTTA
GACTGTTAGAAAGCCTCACAATTCATCAAAGAGTTCATGAAGAAAAGCCT
CATAAATGTAATGAATGTGGAAAGAGCTATGTTCATAAACGCACCCTACA
ATGTCACATTAAAAAGGTCCACAAAGGATTCAATAAATTTCATTGTGAAG
AATGTAGCATGTGTTACAGCGAGAAAAATGACCTTAAGAGGCATGTCGAT
GCAGTTCACAAAGGAATTTTACACCACTGTTGTGATTGTGGGAAAGCTTT
TTCAAGGATGGATTATCTTAGACGTCATCGTCAGGTTACGCATGAAGGCA
CTCTATTCAACTGTGAGgtgtgtggtaaaacatttccACGTAAGGATTAT
CTTGAACGACACCACATGATTACACATGAAGGAATTAAACCGTTTAAATG
TAAGGAATGTGGAAAATCTTTTACAACAAAAGAAGGCTCAATAAAGCATC
TGAATTCTGTTCACAATATAACGCTGGATGAAAATAATGGTTTAAAGGAT
TAAAGGATTGATTTAGAAGGGGAAATTTCCTGATATGTTGAAATTATTGT
AAAATCTAATTCTTATAAGTGGAGTGTTTTATGTACACAATGTAGTTCAA
TGATTGTAATTTATCCTTTAACTTTGCTTCTAAATGGGAAACTTTATTCC
ATTCCAAGAAGATTCTTTCCACCCATCATGCTTATTCAAAACCCCcatct
tttttgttgttggagtaaaggccggcgcaaatgcatccaacatttgatcc
aacataaaagtgacgtcaatctcaTAAAATATGTTGGGTGAAAAGTTTGA
CGAGGATCAAACTTCATCCCACCATGATATCCaacatttttcttaaaaag
ttgcaattttatgaCTTGCGC

Coding sequence (CDS) from alignment at scaffold_57:55918..57488

>TCONS_00070722 ID=TCONS_00070722|Name=TCONS_00070722|organism=Clytia hemisphaerica|type=CDS|length=855bp|location=Sequence derived from alignment at scaffold_57:55918..57488 (Clytia hemisphaerica)
ATggattttttgtttgaaaacctGTTTGTCAAAGAACATGCTGAGGGAAC
TAGAGAATCAGATATCCCAATAGAATTTTCATTTAGCATCAGAAAAGGTG
ACCAAGTTATTGGCACTTGTTGTTTGCAGCTAGAAAGCTTTCTCAAGAAT
ATTGAGATcggtgaaaatgagaaaaacaaatttttcttcaagcCAAATCA
ACCTAAACCAAATTACAAGATTCTGCAGATGACTTCTGAGAAATGTAAAG
ATTGTGGTGAGTTCATTCCATTTGACAAAATTGAGGAACACCAAAATGAA
GTTCACAAAGATTTACGACCTTTTGAGTGTAAGAAATGTGGTAAGATATT
TAGACTGTTAGAAAGCCTCACAATTCATCAAAGAGTTCATGAAGAAAAGC
CTCATAAATGTAATGAATGTGGAAAGAGCTATGTTCATAAACGCACCCTA
CAATGTCACATTAAAAAGGTCCACAAAGGATTCAATAAATTTCATTGTGA
AGAATGTAGCATGTGTTACAGCGAGAAAAATGACCTTAAGAGGCATGTCG
ATGCAGTTCACAAAGGAATTTTACACCACTGTTGTGATTGTGGGAAAGCT
TTTTCAAGGATGGATTATCTTAGACGTCATCGTCAGGTTACGCATGAAGG
CACTCTATTCAACTGTGAGgtgtgtggtaaaacatttccACGTAAGGATT
ATCTTGAACGACACCACATGATTACACATGAAGGAATTAAACCGTTTAAA
TGTAAGGAATGTGGAAAATCTTTTACAACAAAAGAAGGCTCAATAAAGCA
TCTGAATTCTGTTCACAATATAACGCTGGATGAAAATAATGGTTTAAAGG
ATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043998XLOC_043998Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070722-proteinTCONS_00070722-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070722-exon-scaffold_57-1491911889:55918..57488TCONS_00070722-exon-scaffold_57-1491911889:55918..57488Clytia hemisphaericaexon
TCONS_00070722-exon-scaffold_57-1510915933:55918..57488TCONS_00070722-exon-scaffold_57-1510915933:55918..57488Clytia hemisphaericaexon
TCONS_00070722-exon-scaffold_57-1575043694:55918..57488TCONS_00070722-exon-scaffold_57-1575043694:55918..57488Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:55918..57488 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.10991	2.2099	1.2977	0.894489	1.19434	1.38791	2.1768	1.22273	1.14142	0.543782	1.13479	1.16232	1.29929	1.02549	1.03537	1.30159	1.5839	1.26268	0.692247	1.13004	1.38517	1.14244	1.94132	2.28085	3.46789	3.04509	1.35726	0.686133	0.462585	0.79532
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00070722 vs. Swiss-Prot (Human)
Match: ZN565 (Zinc finger protein 565 OS=Homo sapiens GN=ZNF565 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 4.044e-32
Identity = 75/180 (41.67%), Postives = 107/180 (59.44%), Query Frame = -1 
Query:  450 CKDCGE-FIPFDKIEEHQNEVHKDLRPFECKKCGKIFRLLESLTIHQRVHE-EKPHKCNECGKSYVHKRTLQCHIKKVHKGFNKFHCEECSMCYSEKNDLKRHVDAVHKG-ILHHCCDCGKAFSRMDYLRRHRQVTHEGTLFNCEVCGKTFPRKDYLERHHMITHEGIKPFKCKECGKSF 980
            CKDCG+ FI   ++  H+  +H   RP+ECK+CGK FR    LT+HQR+H  EKP++C ECGK ++H   +  H +++H G   + C+EC   + +   L RH   VH G   + C DCGKAFSR  YL +H+++      + C+ CGK F R   L  HH   H   KP++C+ECG +F
Sbjct:  321 CKDCGKAFIRGSQLTVHRR-IHTGARPYECKECGKAFRQHSQLTVHQRIHTGEKPYECKECGKGFIHSSEVTRH-QRIHSGEKPYECKECGKAFRQHAQLTRH-QRVHTGDRPYECKDCGKAFSRSSYLIQHQRIHTGDKPYECKECGKAFIRVSQLT-HHQRIHTCEKPYECRECGMAF 496

HSP 2 Score: 114.775 bits (286), Expect = 4.031e-27
Identity = 67/189 (35.45%), Postives = 107/189 (56.61%), Query Frame = -1 
Query:  423 CKDCGE-FIPFDKIEEHQNEVHKDLRPFECKKCGKIFRLLESLTIHQRVHE-EKPHKCNECGKSYVHKRTLQCHIKKVHKGFNKFHCEECSMCYSEKNDLKRHVDAVHKG-ILHHCCDCGKAFSRMDYLRRHRQVTHEGTLFNCEVCGKTFPRKDYLERHHMITHEGIKPFKCKECGKSFTTKEGSIKH 980
            CKDCG+ F    ++  HQ  +H  ++P+ECK+CGK FR    L +HQR H  EKP+ C +CGK+++    L  H +++H G   + C+EC   + + + L  H   +H G   + C +CGK F     + RH+++      + C+ CGK F +   L RH  + H G +P++CK+CGK+F+     I+H
Sbjct:  265 CKDCGKAFGRTSELILHQR-LHTGVKPYECKECGKTFRQHSQLILHQRTHTGEKPYVCKDCGKAFIRGSQLTVH-RRIHTGARPYECKECGKAFRQHSQLTVH-QRIHTGEKPYECKECGKGFIHSSEVTRHQRIHSGEKPYECKECGKAFRQHAQLTRHQRV-HTGDRPYECKDCGKAFSRSSYLIQH 449

HSP 3 Score: 105.531 bits (262), Expect = 5.066e-24
Identity = 69/190 (36.32%), Postives = 99/190 (52.11%), Query Frame = -1 
Query:  423 KCKDCGE-FIPFDKIEEHQNEVHKDLRPFECKKCGKIFRLLESLTIHQRVHE-EKPHKCNECGKSYVHKRTLQCHIKKVHKGFNKFHCEECSMCYSEKNDLKRHVDAVHKGILHHCC-DCGKAFSRMDYLRRHRQVTHEGTLFNCEVCGKTFPRKDYLERHHMITHEGIKPFKCKECGKSFTTKEGSIKH 983
            +C +CG+ F     + +HQ  +H   +PF CK+CGK F     L  HQR+H  EKP+ C +CGK++     L  H +++H G   + C+EC   + + + L  H    H G   + C DCGKAF R   L  HR++      + C+ CGK F +   L  H  I H G KP++CKECGK F       +H
Sbjct:  208 ECHECGKAFSRGSHLIQHQK-IHTGEKPFGCKECGKAFSRASHLVQHQRIHTGEKPYDCKDCGKAFGRTSELILH-QRLHTGVKPYECKECGKTFRQHSQLILH-QRTHTGEKPYVCKDCGKAFIRGSQLTVHRRIHTGARPYECKECGKAFRQHSQLTVHQRI-HTGEKPYECKECGKGFIHSSEVTRH 393

HSP 4 Score: 98.5969 bits (244), Expect = 1.137e-21
Identity = 64/189 (33.86%), Postives = 96/189 (50.79%), Query Frame = -1 
Query:  423 KCKDCGE-FIPFDKIEEHQNEVHKDLRPFECKKCGKIFRLLESLTIHQRVHE-EKPHKCNECGKSYVHKRTLQCHIKKVHKGFNKFHCEECSMCYSEKNDLKRHVDAVHKGILHHCCDCGKAFSRMDYLRRHRQVTHEGTLFNCEVCGKTFPRKDYLERHHMITHEGIKPFKCKECGKSFTTKEGSIKH 983
            +CK+CG+ FI   ++  HQ  +H   +P+ECK+CGK FR    LT HQRVH  ++P++C +CGK++     L  H +++H G   + C+E                            CGKAF R+  L  H+++      + C  CG  F R   L  H  I H GIKP++C+ECG++F      I+H
Sbjct:  376 ECKECGKGFIHSSEVTRHQR-IHSGEKPYECKECGKAFRQHAQLTRHQRVHTGDRPYECKDCGKAFSRSSYLIQH-QRIHTGDKPYECKE----------------------------CGKAFIRVSQLTHHQRIHTCEKPYECRECGMAFIRSSQLTEHQRI-HPGIKPYECRECGQAFILGSQLIEH 533
The following BLAST results are available for this feature:
BLAST of TCONS_00070722 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN5654.044e-3241.67Zinc finger protein 565 OS=Homo sapiens GN=ZNF565 ... [more]
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