TCONS_00070717 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070717
Unique NameTCONS_00070717
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1772

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070717 ID=TCONS_00070717|Name=TCONS_00070717|organism=Clytia hemisphaerica|type=transcript|length=1772bp
CGACTTTACAGGGAAACTTGGCGAAACTGAGAGCATAATTATCATTCTAA
TAACTAATATGGTCACTCCAGCCCCATTGGCTATAATAATGTTTAAACAG
ACACTGTTCATCTTCCATAATATGGAAAATTTATAATGTTCTTCAGTGTA
AACTCTGTGAATCCGACAGCACAATATACAATAACGTAACCTTTTAAAAG
GTAACACAAAACTTCTGATAAGTCATAACTTATTTTTGTAATAgagtttt
tttcttattattataATTAACAAGTACCAACAACTACATAATATGTACAT
TCTTCCTCACGACGATGAGTTCCCTTCTTTGCAAACTAACATGTGCTTTT
TAAGAGGATGCTTCTGTGAATAACATTTACCACAGTAATCACACTTGAAT
GGCTTAAGACCAGAGTGAGCGGCCAAATGTCGTTTTAAATGGTCTTTCCT
CAAGAACTTCTTTTCGCAAATATCGCAACTGAAAGGTCGAATACCTGAAT
GTGTTTCCTCGTGTGCTTTCAAATGTCCTTTTTGTGCAAACCCCTTACCA
CATTCCTTGCACTTAAAAGACAATTCACCGGCAGCTGCCTTGTTAGCTCG
TGATTCTgaagattttgattgtttggCATTGGGCGTACCAGGTTGAGATG
TCTCGTCTAACATTGTAAACGTTTCTGACGCGTTTTCGGGCAGATTCGGA
ATGCTGTTAGGAAATACGTTTTGACTTAGAATGTTTGTGTTCAATTGCTC
AGCTGTAGCATTAGGtgttggtttttgttggaaTGAGCTAGCTATCGGAT
TTTGAGATGTACTTTGAGATGGAAAAGCTTGTTGCTGATTGATTGGAGTT
GGGTTAGCATTGGTGACATTTCCTTGGAAGAATGAAGAATTGTAGGCTTG
TGGTTGGTTGATCATTGACGGGTTTAAGTTGCCAGTCATCATACCGGCCG
GCATATTAGGGTTATTGAATACTGGTTGATTCATAGTGGTCGCTGTATTC
GCATTTTCACTCATTACATTGGGCGTTGCTTGGGGTGGAAAGAAGGCGTT
TCCTGCCATGGGCTGTTGGTTGAAGACTGGTTGCTGATTAACTGTACTCA
TGTTGACATTGTTAAGCATATTTGGCGGTACGTTGTTTGGAGTATTAAAC
ATTTGCTGGTTTGCCATTGCAGGGTTAGCTCGTCCATTGATGTTATCTGG
CAAGCTCGGAGGTGTATTCTGGACTTGGCGATTTGTATTTGCTATACTCG
GTGTAGCACTGCTATAAGGGTTTGCGGTTACATTTGGAACACTTGAGACA
GGGGTGGGTTGACTAATAACTACCTTCTTGGCGTTTGATTTCTGCTGCGA
AGCTGCGTTGATTCTAGCTAGTGTTGGTGCGTTAAAAGCATACTGGTGAA
TGTCGAGTTTCTCTTTCACCAAGGGGATGTTATAGAATGGTTGACTTTGT
AAGGACTCTTGTGTTACATTTAGCATTTGTTGGAATATGGGCTTTGGCTC
AACCATACGATTGAAATTCATAGAATTGGGTCTTGGAAGATATGGATGGT
GTTGATGGCCAAAGTTGttcattgttgttttgatttgtttatttTACTAT
AATGGTGTTTTTTTGTTCTAAATTTTCTAATCTATACCCTGAAAGAACAA
AGTTTATGCGATGGTAAGAAGAATGTTCTAAAATTCCAAATACACGttgg
tttttataagaacaaaccatataagagcataaggcttcgatagccaaact
attaagaacaagtcaagaacag
Run BLAST on NCBI

protein sequence of TCONS_00070717-protein

>TCONS_00070717-protein ID=TCONS_00070717-protein|Name=TCONS_00070717-protein|organism=Clytia hemisphaerica|type=polypeptide|length=421bp
MNNFGHQHHPYLPRPNSMNFNRMVEPKPIFQQMLNVTQESLQSQPFYNIP
LVKEKLDIHQYAFNAPTLARINAASQQKSNAKKVVISQPTPVSSVPNVTA
NPYSSATPSIANTNRQVQNTPPSLPDNINGRANPAMANQQMFNTPNNVPP
NMLNNVNMSTVNQQPVFNQQPMAGNAFFPPQATPNVMSENANTATTMNQP
VFNNPNMPAGMMTGNLNPSMINQPQAYNSSFFQGNVTNANPTPINQQQAF
PSQSTSQNPIASSFQQKPTPNATAEQLNTNILSQNVFPNSIPNLPENASE
TFTMLDETSQPGTPNAKQSKSSESRANKAAAGELSFKCKECGKGFAQKGH
LKAHEETHSGIRPFSCDICEKKFLRKDHLKRHLAAHSGLKPFKCDYCGKC
YSQKHPLKKHMLVCKEGNSSS
Run BLAST on NCBI

transcript from alignment at scaffold_57:16579..18350

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070717 ID=TCONS_00070717|Name=TCONS_00070717|organism=Clytia hemisphaerica|type=transcript|length=1772bp|location=Sequence derived from alignment at scaffold_57:16579..18350 (Clytia hemisphaerica)
ctgttcttgacttgttcttaatagtttggctatcgaagccttatgctctt
atatggtttgttcttataaaaaccaaCGTGTATTTGGAATTTTAGAACAT
TCTTCTTACCATCGCATAAACTTTGTTCTTTCAGGGTATAGATTAGAAAA
TTTAGAACAAAAAAACACCATTATAGTAaaataaacaaatcaaaacaaca
atgaaCAACTTTGGCCATCAACACCATCCATATCTTCCAAGACCCAATTC
TATGAATTTCAATCGTATGGTTGAGCCAAAGCCCATATTCCAACAAATGC
TAAATGTAACACAAGAGTCCTTACAAAGTCAACCATTCTATAACATCCCC
TTGGTGAAAGAGAAACTCGACATTCACCAGTATGCTTTTAACGCACCAAC
ACTAGCTAGAATCAACGCAGCTTCGCAGCAGAAATCAAACGCCAAGAAGG
TAGTTATTAGTCAACCCACCCCTGTCTCAAGTGTTCCAAATGTAACCGCA
AACCCTTATAGCAGTGCTACACCGAGTATAGCAAATACAAATCGCCAAGT
CCAGAATACACCTCCGAGCTTGCCAGATAACATCAATGGACGAGCTAACC
CTGCAATGGCAAACCAGCAAATGTTTAATACTCCAAACAACGTACCGCCA
AATATGCTTAACAATGTCAACATGAGTACAGTTAATCAGCAACCAGTCTT
CAACCAACAGCCCATGGCAGGAAACGCCTTCTTTCCACCCCAAGCAACGC
CCAATGTAATGAGTGAAAATGCGAATACAGCGACCACTATGAATCAACCA
GTATTCAATAACCCTAATATGCCGGCCGGTATGATGACTGGCAACTTAAA
CCCGTCAATGATCAACCAACCACAAGCCTACAATTCTTCATTCTTCCAAG
GAAATGTCACCAATGCTAACCCAACTCCAATCAATCAGCAACAAGCTTTT
CCATCTCAAAGTACATCTCAAAATCCGATAGCTAGCTCAttccaacaaaa
accaacaCCTAATGCTACAGCTGAGCAATTGAACACAAACATTCTAAGTC
AAAACGTATTTCCTAACAGCATTCCGAATCTGCCCGAAAACGCGTCAGAA
ACGTTTACAATGTTAGACGAGACATCTCAACCTGGTACGCCCAATGccaa
acaatcaaaatcttcAGAATCACGAGCTAACAAGGCAGCTGCCGGTGAAT
TGTCTTTTAAGTGCAAGGAATGTGGTAAGGGGTTTGCACAAAAAGGACAT
TTGAAAGCACACGAGGAAACACATTCAGGTATTCGACCTTTCAGTTGCGA
TATTTGCGAAAAGAAGTTCTTGAGGAAAGACCATTTAAAACGACATTTGG
CCGCTCACTCTGGTCTTAAGCCATTCAAGTGTGATTACTGTGGTAAATGT
TATTCACAGAAGCATCCTCTTAAAAAGCACATGTTAGTTTGCAAAGAAGG
GAACTCATCGTCGTGAGGAAGAATGTACATATTATGTAGTTGTTGGTACT
TGTTAATtataataataagaaaaaaactcTATTACAAAAATAAGTTATGA
CTTATCAGAAGTTTTGTGTTACCTTTTAAAAGGTTACGTTATTGTATATT
GTGCTGTCGGATTCACAGAGTTTACACTGAAGAACATTATAAATTTTCCA
TATTATGGAAGATGAACAGTGTCTGTTTAAACATTATTATAGCCAATGGG
GCTGGAGTGACCATATTAGTTATTAGAATGATAATTATGCTCTCAGTTTC
GCCAAGTTTCCCTGTAAAGTCG

Coding sequence (CDS) from alignment at scaffold_57:16579..18350

>TCONS_00070717 ID=TCONS_00070717|Name=TCONS_00070717|organism=Clytia hemisphaerica|type=CDS|length=1266bp|location=Sequence derived from alignment at scaffold_57:16579..18350 (Clytia hemisphaerica)
atgaaCAACTTTGGCCATCAACACCATCCATATCTTCCAAGACCCAATTC
TATGAATTTCAATCGTATGGTTGAGCCAAAGCCCATATTCCAACAAATGC
TAAATGTAACACAAGAGTCCTTACAAAGTCAACCATTCTATAACATCCCC
TTGGTGAAAGAGAAACTCGACATTCACCAGTATGCTTTTAACGCACCAAC
ACTAGCTAGAATCAACGCAGCTTCGCAGCAGAAATCAAACGCCAAGAAGG
TAGTTATTAGTCAACCCACCCCTGTCTCAAGTGTTCCAAATGTAACCGCA
AACCCTTATAGCAGTGCTACACCGAGTATAGCAAATACAAATCGCCAAGT
CCAGAATACACCTCCGAGCTTGCCAGATAACATCAATGGACGAGCTAACC
CTGCAATGGCAAACCAGCAAATGTTTAATACTCCAAACAACGTACCGCCA
AATATGCTTAACAATGTCAACATGAGTACAGTTAATCAGCAACCAGTCTT
CAACCAACAGCCCATGGCAGGAAACGCCTTCTTTCCACCCCAAGCAACGC
CCAATGTAATGAGTGAAAATGCGAATACAGCGACCACTATGAATCAACCA
GTATTCAATAACCCTAATATGCCGGCCGGTATGATGACTGGCAACTTAAA
CCCGTCAATGATCAACCAACCACAAGCCTACAATTCTTCATTCTTCCAAG
GAAATGTCACCAATGCTAACCCAACTCCAATCAATCAGCAACAAGCTTTT
CCATCTCAAAGTACATCTCAAAATCCGATAGCTAGCTCAttccaacaaaa
accaacaCCTAATGCTACAGCTGAGCAATTGAACACAAACATTCTAAGTC
AAAACGTATTTCCTAACAGCATTCCGAATCTGCCCGAAAACGCGTCAGAA
ACGTTTACAATGTTAGACGAGACATCTCAACCTGGTACGCCCAATGccaa
acaatcaaaatcttcAGAATCACGAGCTAACAAGGCAGCTGCCGGTGAAT
TGTCTTTTAAGTGCAAGGAATGTGGTAAGGGGTTTGCACAAAAAGGACAT
TTGAAAGCACACGAGGAAACACATTCAGGTATTCGACCTTTCAGTTGCGA
TATTTGCGAAAAGAAGTTCTTGAGGAAAGACCATTTAAAACGACATTTGG
CCGCTCACTCTGGTCTTAAGCCATTCAAGTGTGATTACTGTGGTAAATGT
TATTCACAGAAGCATCCTCTTAAAAAGCACATGTTAGTTTGCAAAGAAGG
GAACTCATCGTCGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043993XLOC_043993Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070717-proteinTCONS_00070717-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070717-exon-scaffold_57-1491911889:16579..18350TCONS_00070717-exon-scaffold_57-1491911889:16579..18350Clytia hemisphaericaexon
TCONS_00070717-exon-scaffold_57-1510915933:16579..18350TCONS_00070717-exon-scaffold_57-1510915933:16579..18350Clytia hemisphaericaexon
TCONS_00070717-exon-scaffold_57-1575043694:16579..18350TCONS_00070717-exon-scaffold_57-1575043694:16579..18350Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:16579..18350 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.94064	5.35657	2.78926	1.93607	52.9901	42.0178	22.0899	23.1783	10.2305	11.3611	10.5867	6.71057	8.83852	7.36838	6.75708	7.24582	10.511	11.9461	5.02538	6.41331	7.48208	8.21276	6.82981	7.64508	12.5264	12.5521	10.5557	6.80659	7.04165	7.41137
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00070717 vs. Swiss-Prot (Human)
Match: ZN235 (Zinc finger protein 235 OS=Homo sapiens GN=ZNF235 PE=2 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 2.365e-20
Identity = 40/86 (46.51%), Postives = 60/86 (69.77%), Query Frame = -3 
Query:  334 KAAAGELSFKCKECGKGFAQKGHLKAHEETHSGIRPFSCDICEKKFLRKDHLKRHLAAHSGLKPFKCDYCGKCYSQKHPLKKHMLV 591
            +   GE  +KC+ECGKGF+Q  +L+AH+  H+G +PF CD C+K+F +  HL+ H   H+G KP+KCD CGK +SQ+  L+ H ++
Sbjct:  563 RVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQII 648

HSP 2 Score: 82.8037 bits (203), Expect = 1.761e-16
Identity = 38/86 (44.19%), Postives = 51/86 (59.30%), Query Frame = -3 
Query:  334 KAAAGELSFKCKECGKGFAQKGHLKAHEETHSGIRPFSCDICEKKFLRKDHLKRHLAAHSGLKPFKCDYCGKCYSQKHPLKKHMLV 591
            +   GE  +KC+ CGKGF Q+ HL+AHE  H+G +P+ C  C K+F    +L  H   H+  KP+KCD CGKC+S    L  H  V
Sbjct:  395 RVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRV 480
The following BLAST results are available for this feature:
BLAST of TCONS_00070717 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN2352.365e-2046.51Zinc finger protein 235 OS=Homo sapiens GN=ZNF235 ... [more]
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