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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070716 ID=TCONS_00070716|Name=TCONS_00070716|organism=Clytia hemisphaerica|type=transcript|length=3401bpRun BLAST on NCBI protein sequence of TCONS_00070716-protein >TCONS_00070716-protein ID=TCONS_00070716-protein|Name=TCONS_00070716-protein|organism=Clytia hemisphaerica|type=polypeptide|length=359bp MDGEVKVELKEETVESCENSSRGEVYVVDNDVETPIVYQNLDEDSTFKCNRun BLAST on NCBI transcript from alignment at scaffold_57:12861..16261 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070716 ID=TCONS_00070716|Name=TCONS_00070716|organism=Clytia hemisphaerica|type=transcript|length=3401bp|location=Sequence derived from alignment at scaffold_57:12861..16261 (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_57:12861..16261 >TCONS_00070716 ID=TCONS_00070716|Name=TCONS_00070716|organism=Clytia hemisphaerica|type=CDS|length=1080bp|location=Sequence derived from alignment at scaffold_57:12861..16261 (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070716 vs. Swiss-Prot (Human)
Match: ZFP2 (Zinc finger protein 2 homolog OS=Homo sapiens GN=ZFP2 PE=1 SV=1) HSP 1 Score: 256.144 bits (653), Expect = 1.614e-74 Identity = 131/304 (43.09%), Postives = 175/304 (57.57%), Query Frame = -1
Query: 1911 FKCNECDECFPQSELLNDHIDLRHGDTNEFRCDVCGKSFARKEYLRKHLSIHNDTKSFKCEECGKCFAQKGSLKRHLESHQGFRPFKCDLCDKSFTQSGSLKKHLELHTEFKPYQCEVCEKSFARKDYLQKHLLVHEEIKPFECGKCGKTFTQERNLRRHLESHEGLKPFECEVCKKCFTQSGSLKKHMRLHEEIKEFECDICGKCFARKDYLQKHVDIHNDIRPFQCEECGKSFTQERYLKTHINAHRGIKPFVCDLCGKSFTQSGSLKKHLDLHKGTKPFQCNVCDKGFSRKDYLERHVLVH 2822
+KCNEC + F QS L H G+ ++C CGK+F + L +H IH K +KC ECGK F Q +L H +H G +P++C+ C K+F+QS L H HT KPY+C C K+F++ L H H KP++C KCGK+F+Q L H H G+KPFEC C K F+++ SL +H R+H K +EC +CGK F + L H IH +P++C ECGK+F+Q YL H H G KP+ CD CGK+F ++ SL H H G KP+QCN C K FSR L RH H
Sbjct: 158 YKCNECGKAFSQSMNLTVHQRTHTGE-KPYQCKECGKAFHKNSSLIQHERIHTGEKPYKCNECGKAFTQSMNLTVHQRTHTGEKPYECNECGKAFSQSMHLIVHQRSHTGEKPYECSQCGKAFSKSSTLTLHQRNHTGEKPYKCNKCGKSFSQSTYLIEHQRLHSGVKPFECNECGKAFSKNSSLTQHRRIHTGEKPYECMVCGKHFTGRSSLTVHQVIHTGEKPYECNECGKAFSQSAYLIEHQRIHTGEKPYECDQCGKAFIKNSSLTVHQRTHTGEKPYQCNECGKAFSRSTNLTRHQRTH 460 HSP 2 Score: 253.447 bits (646), Expect = 1.364e-73 Identity = 126/307 (41.04%), Postives = 180/307 (58.63%), Query Frame = -1
Query: 1902 FKCNECDECFPQSELLNDHIDLRHGDTNEFRCDVCGKSFARKEYLRKHLSIHNDTKSFKCEECGKCFAQKGSLKRHLESHQGFRPFKCDLCDKSFTQSGSLKKHLELHTEFKPYQCEVCEKSFARKDYLQKHLLVHEEIKPFECGKCGKTFTQERNLRRHLESHEGLKPFECEVCKKCFTQSGSLKKHMRLHEEIKEFECDICGKCFARKDYLQKHVDIHNDIRPFQCEECGKSFTQERYLKTHINAHRGIKPFVCDLCGKSFTQSGSLKKHLDLHKGTKPFQCNVCDKGFSRKDYLERHVLVHRSE 2822
++CN+C + F QS L H + G+ ++C+VCGK F + L H IH K +KC ECGK F+Q +L H +H G +P++C C K+F ++ SL +H +HT KPY+C C K+F + L H H KP+EC +CGK F+Q +L H SH G KP+EC C K F++S +L H R H K ++C+ CGK F++ YL +H +H+ ++PF+C ECGK+F++ L H H G KP+ C +CGK FT SL H +H G KP++CN C K FS+ YL H +H E
Sbjct: 102 YECNQCSKTFSQSSSLLKHQRIHTGE-KPYKCNVCGKHFIERSSLTVHQRIHTGEKPYKCNECGKAFSQSMNLTVHQRTHTGEKPYQCKECGKAFHKNSSLIQHERIHTGEKPYKCNECGKAFTQSMNLTVHQRTHTGEKPYECNECGKAFSQSMHLIVHQRSHTGEKPYECSQCGKAFSKSSTLTLHQRNHTGEKPYKCNKCGKSFSQSTYLIEHQRLHSGVKPFECNECGKAFSKNSSLTQHRRIHTGEKPYECMVCGKHFTGRSSLTVHQVIHTGEKPYECNECGKAFSQSAYLIEHQRIHTGE 407 HSP 3 Score: 210.69 bits (535), Expect = 1.812e-58 Identity = 113/304 (37.17%), Postives = 165/304 (54.28%), Query Frame = -1
Query: 1902 NECDECFPQSELLNDHIDLRHGDTNEFRCDVCGKSFARKEYLRKHLSIHNDTKSFKCEECGKCFAQKGSLKRHLESHQGFRPFKCDLCDKSFTQSGSLKKHLELHTEFKPYQCEVCEKSFARKDYLQKHLLVHEEIKPFECGKCGKTFTQERNLRRHLESHEGLKPFECEVCKKCFTQSGSLKKHMRLHEEIKEFECDICGKCFARKDYLQKHVDIHNDIRPFQCEECGKSFTQERYLKTHINAHRGIKPFVCDLCGKSFTQSGSLKKHLDLHKGTKPFQCNVCDKGFSRKDYLERHVLVHRSE 2813
NE + C Q +L+ + C+ G+ + L K + K ++C +C K F+Q SL +H H G +P+KC++C K F + SL H +HT KPY+C C K+F++ L H H KP++C +CGK F + +L +H H G KP++C C K FTQS +L H R H K +EC+ CGK F++ +L H H +P++C +CGK+F++ L H H G KP+ C+ CGKSF+QS L +H LH G KPF+CN C K FS+ L +H +H E
Sbjct: 49 NEFERCSSQDSILDTQQSIPMVK-RPHNCNSHGEDATQNSELIKTQRMFVGKKIYECNQCSKTFSQSSSLLKHQRIHTGEKPYKCNVCGKHFIERSSLTVHQRIHTGEKPYKCNECGKAFSQSMNLTVHQRTHTGEKPYQCKECGKAFHKNSSLIQHERIHTGEKPYKCNECGKAFTQSMNLTVHQRTHTGEKPYECNECGKAFSQSMHLIVHQRSHTGEKPYECSQCGKAFSKSSTLTLHQRNHTGEKPYKCNKCGKSFSQSTYLIEHQRLHSGVKPFECNECGKAFSKNSSLTQHRRIHTGE 351 HSP 4 Score: 131.339 bits (329), Expect = 7.756e-32 Identity = 66/172 (38.37%), Postives = 98/172 (56.98%), Query Frame = -1
Query: 2331 QNLDEDSTFKCNECDECFPQSELLNDHIDLRHGDTNEFRCDVCGKSFARKEYLRKHLSIHNDTKSFKCEECGKCFAQKGSLKRHLESHQGFRPFKCDLCDKSFTQSGSLKKHLELHTEFKPYQCEVCEKSFARKDYLQKHLLVHEEIKPFECGKCGKTFTQERNLRRHLESH 2846
+N + +KCN+C + F QS L +H L H F C+ CGK+F++ L +H IH K ++C CGK F + SL H H G +P++C+ C K+F+QS L +H +HT KPY+C+ C K+F + L H H KP++C +CGK F++ NL RH +H
Sbjct: 290 RNHTGEKPYKCNKCGKSFSQSTYLIEHQRL-HSGVKPFECNECGKAFSKNSSLTQHRRIHTGEKPYECMVCGKHFTGRSSLTVHQVIHTGEKPYECNECGKAFSQSAYLIEHQRIHTGEKPYECDQCGKAFIKNSSLTVHQRTHTGEKPYQCNECGKAFSRSTNLTRHQRTH 460 The following BLAST results are available for this feature:
BLAST of TCONS_00070716 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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