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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070686 ID=TCONS_00070686|Name=TCONS_00070686|organism=Clytia hemisphaerica|type=transcript|length=3861bp
TACCGATGTTCGATTGTAAGATGTCCACATATCAGCAGCTCAACCTATTC
CATGTAAAATCATTCGAAAACAATTTACTGAAGGCGTTATTCAGTTACCA
CAGTACCTTCAACAAATCAAAAGTTGCAAAGAAATACCTTCTTTGAAACG
ACAAATACCAAAACAGAAAGACACGACGACACGACAGCTACGACAACTCC
CGACAAACAACCGGCCTCTCTTACCATGGCAACAACTTTACAACGAATTA
TTACAACGGAAACGACAACAGACCGATCAACAGCGACAACGATCGTTGAT
TGAACAAGAAAATTTACAGAAACAATTTTTACAACATACCACACAACCTA
TGGTACAACAGAGTGGACTTTATAAACCACAACAACTGGATAAAACTGAA
CATAAAAAGCAATCGTTAACAGAAAATTTCGTCTTTAAGCGTCAGAAACA
GCAACAACAGCCACAACAAAGACGACTGAATAGACGACAGTTCACACAAC
CTATACAACCACCAACATTTACATTATTACCAACCCAGAAACAAAGACAG
GACTTACAACAGAAAGAACTTATACGACGTACACAACAGCAATTTGCGTA
CATGAAATGGTTTACAGCTTTAAAAGAACACCAACAACAGTTACTACATC
AACAACAGCCTGCGATTAAGCGAAAACAAGACAAGATACAACCAACAACA
TCATACATTACACAGGCGTTGGGCTACAATCCAAAGTCGCCATTCACTAA
TTACCCACTCTCACCAGGAAGAGGGAAAGTTACGAACCAGTTTGCTTTCA
AAACTCAGCAGCAAAAGGCAGCAAAGATTACGACAAAAGCTACAAAAATG
CCACCGAAAACtgactggaaaattttgaaaataccaAAAGGGCTTCTTca
gttgaaaaacaaaaacaaacctatTAAAGCAAGAGAAAATAATAAAGCTC
ATGAGAAACTTGTCTTTAAAATACAAAGCCATCCTTCTAAGACAAAATCT
GTAGTCCGACCACTAAAGAACgctgaaaaaatcttaaaagtcATGCACCA
AAAATCACCTAATAAACAACACACTCCATATATTGCTGCAGTAAAAATCC
GGCAAAAACTACAGCCAAAACAAATAACAAACAGTAAAGTGACACTCGTT
GAAAATAAGATATCACCAAAGATATCAccgaaaaaatccaataaaatgTT
GAATGATGGTGAGAGATCACTAGGGAAAGGAATGGaggatgaaaaatcaa
aaacccaATTACAAGATTTactaaaaacaatcaaaataagcgattttcaa
aaattacatgGGAAAACGcaccaaatcaaatcaaataaatcaaaGCCTTT
AAATACACCTTTACTAACCAAGGACAGTCAATCACGAAAAGGTAAACCAG
ACGTCGTAACTGTAGCTAAAACAAAGTCCCCAACAATTACTCAAATAgag
acaacaacaacaacaatgaCAACAGCAAACCAGGAACTACAAACGACACC
TGCCAACAATCAGCCATCAAAGAATGACAACAAAATCCCTCCTCCagaga
tcaaaacaaacactgAACTCGAGCAAGCGTTACAGAACTTACTATCAACC
GACACACAACAGAACATAAACAGTTATTACCCAAATTATGCTTCACCATA
CTACGACCAAAATGCAGTACAAACACAACCCAATTTCTACATTCCACCTT
CCACCTATCCATGGTGGCAACAACCTTATAGAGAATATGGTAGAAGTGTT
ATCCAAGACTTACCAGGAGCTTTTAATCCACATATGACTTCTTTTCCATC
TTTCAGCCAGCATATAGATGATTCAAGGGTCCGGAAAACATTTGTTGATG
AGGAAGCTAAAATTGCGGAGAGTGAGGATGGTATACGTTCGTTTTTAAGT
AAACACAAAAGTGATACCTCATTGTTCCAGAATGAAGTGGAGGCAAAGGA
CGATATTTTACCTTCTGAAGGAGGACCTGGTAGTCCTGAAAACGGACATT
TATTAACTTTGAAAGACTATGAAGCATTTATTGCGCACCCTACGAATTCC
TCTTTAAAGTCTATCGAGAATTCGCCTGAAGTGGAGCTTCAGGAGCCTGG
GGAGACTCGAACAATGGATAATATAGTCAACGGTGACGATGATGATGAGG
TTATCGCAGAGGCTAAATTAATCAAGGAACAGAGTCTAGCCAAAGCAGCC
ATTCAATCAGATAACGGGCGACGTAAGGATGTGTTAAGAGAACAAGAATC
ATTACGGAAACTTGAGCATGATAAATTGATTGAGAGATACGGTCATCCAC
CTGCCAACCCCATGGAATATCTAGCACAAGTCTTTCAAGAGTTGGATGAT
GATACGAAAAACTTGGAAACAGCGAATGCAATAAAGAAAGAGGACATTCA
AAATGGCAGCAAAGCTGCCTCTGGTATTGATAATCGTAAAGTGGCTCAAT
CACCCTCTGAGCCTATCTTAGGCGAAACAAAATCGACTTTAGAACTCAAA
TCAAGTGATAATCAAACTTCTAAAACACTTAATATAAATTCAACAGATTC
TGGCGTAAATGATGCAAATCAGACTTTATCAAGAAACGGCGCTTCATTAA
AAGGTGTCGATCCTTTAACTGTCAAAAATGATGATTCATCTTTACTAGAt
tctgtttttgaaaaaatcaacgTTCAAAAAGATAATAGTACAACCAAGGT
TAAGCGATCCCCGATCATTGATGCTGACCTTGAACCGTGGACGAACAGAC
ATAAATATAACCAACCTATAAATATACCAAACTCTGATAAAGCAAGTTTG
ACCAGTACAAAGTTTCCATTAGGAGATATAGCTGATATAGCACAGCAGGT
CAATAAAAGAAGCGATATTCCCAAAGCTTGGACAGCAGATGATGGTGTTT
CTATGGGAGCAAACACAGACCATTCTAGACTAACATATTCGGAGGTTAAA
AGACTTTTTACAGATATTGAATCAAATAAGAAAGGATCTTTATGGAAGCT
CTCTGTCACTAAAAGATCAAATGGTTTGAAAGGAGAGACAAATGCGAAAT
TATTGGTCAACGAAGGGAATGCTGATGGATTTTTAAGATAGTCGAAAATC
TTGATAATAAAGTAAAGTCTCGAACcactataactcgaatgtctccttaa
ctagAACACGTTCTTTTGTCCATTCAGTTAATAATATCTTAgaaacctta
ctccatatctcgaaatttccataactcgaacaaatttgtattccttgtgc
gtgttcgagttatggagactcaactgtatcGTTATTGAACATGTTATGTG
AACATCCTGTGACTTTAATTCTTTGGTTAAATGGTCAAGAAGGGTTTTTG
CCAAGTCTGTACCAAACCGATTTTCACATCAGCTCTAATGTTTTCCAAGT
GAAcaactttttaacaattatttcataattttctaaAGATTTCGTTGGTC
ATTGACTTATCCACACCTAAATTgtacaaaaatgaatttttgcttcggaa
TTTCactattataaagtttttttccccttttttggaattcatacatgaaa
aatcaaattagtcaaaaagaggaacaaaacctaaaaaatcggtatcggaa
tagTATTTCTTACGGAATCtcggaaattttagcaaaattattcggtattt
cggaaatcgcaaactcCATACGCCCCCTCCCCCTTCTAAGGTTGTCGTGG
TGATCATTTCGCTTAATTTCAGGATTTTTATACCTTAAATACTGCAGATG
GGGAAAAGAGGGAACAAATTTGGCGATTCAACCAAATTagttgtcattaa
aatacagttgcctctctctaatttgatctttAAAGGATTACAACTTTGCT
TCGAATTTTAG Run BLAST on NCBI transcript from alignment at scaffold_57:510146..516359- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070686 ID=TCONS_00070686|Name=TCONS_00070686|organism=Clytia hemisphaerica|type=transcript|length=6214bp|location=Sequence derived from alignment at scaffold_57:510146..516359- (Clytia hemisphaerica)
TACCGATGTTCGATTGTAAGGTCTGGTATACATATTCATGATATTTGTAG
CGAAAGTGGATTTTCAATGAGTAAAATTTTAAAGTAAATGTCAGCCTACT
CTAGCTAAGGTTAAGGCTAAGGTCCTAGAGACCTTTTTTCTCAGATATAA
AGGAGTTTCAAATTATTCCTTCGAACGAACTTCAGCTTTAAAAAATTATC
TACTTTTTTTCGTTTTTTGCAGATGTCCACATATCAGCAGCTCAACCTAT
TCCATGTAAAATCATTCGAAAACAATTTACTGAAGGCGTTATTCAGTTAC
CACAGTACCTTCAACAAATCAAAAGTTGCAAAGAAAGTAAGTTTTATGCA
TTGTGAATTACATCCTCCTTTCACAGACTAGCTAAAACCTGTGCCCCATT
TGAAAATTTGAACAAATCTCATACCCGGTGGAAAGAATACCCTACAATTT
CACCCACTTGGAAATTGACTTTGATTTCATCCCCATTTGAAATTCGATGA
CAAAAATTGTAATCCAAAACCATCCTCACTGGATTTTCTGAGCTGGAAAC
AATATAATTTCTATCCCCAATTTGGATTTTGATAGACTTTTTCATCCCCG
CTGTAGGAAAAAGTTCCACTTGGGCTGTGAGACAGGAGTGTTGACCTGTG
TACCCCCTTTTATACGAGCTCAACCTTCACTTGTAAATTTTTTGAGAATC
CCTCAAAATGGAGCTCAGTCCCTTAGTTCACTTTTTTATGATAATATCCG
TTAGATTAACGGTGAAGGAAAGCTTTTATTACATCCCCTTCTTACAGACC
CAATGAGACCCCTTCCCACTAGAAATATTGACCAAAATATCATCCCAAAT
AGAAAATAAGACTCAAATTGTCTCTGCTGAATATAATGTAATAAACAAAT
CCTAATTGCAAAATATTGTGCTATTTTTCTATTTCCATTGAATTTTCCGG
CTTAAAAACAATGAAATTGGAAACCCCAGCCATAATAACTGCACCAAATT
CCATTCTGTTTTTACTACCCCAACAGGAAAATTCTACCAGGTCTGTAAAA
GGGCTGTACTTTTTTGGATAGGGTTCTCAGCGAATCATATTTTCATTTTT
GTTTTGCTTCTTATGTAGTACCTTCTTTGAAACGACAAATACCAAAACAG
AAAGACACGACGACACGACAGCTACGACAACTCCCGACAAACAACCGGCC
TCTCTTACCATGGCAACAACTNATAATGATTCTACTGTATGACGACAGTT
CTAATCAGGAATCCTTTGTAAAAAACCGCATGTCATTATCATTGCACTAT
ACTTTAATGATTTGCTTTTATAATTATTTTACAAACTTCAACTTTGATCA
TTTGTTTGCTTACTGTTTCTACCGATGTTCGATTGTAAGGTCTGGTATAC
ATATTCATGATATTTGTAGCGAAAGTGGATTTTCAATGAGTAAAATTTTA
AAGTAAATGTCAGCCTACTCTAGCTAAGGTTAAGGCTAAGGTCCTAGAGA
CCTTTTTTCTCAGATATAAAGGAGTTTCAAATTATTCCTTCGAACGAACT
TCAGCTTTTAAAAATTATCTACTTTTTTTCGTTTTTTGCAGATGTCCACA
TATCAGCAGCTCAACCTATTCCATGTAAAATCATTCGAAAACAATTTACT
GAAGGCGTTATTCAGTTACCACAGTACCTTCAACAAATCAAAAGTTGCAA
AGAAAGTAAGTTTTATGCATTGTGAATTACATCCTCCTTTCACAGACTAG
CTAAAACCTGTGCCCCATTTGAAAATTTGAACAAATCTCATACCCGGTGG
AAAGAATACCCTACAATTTCACCCACTTGGAAATTGACTTTGATTTCATC
CCCATTTGAAATTCGATGACAAAAATTGTAATCCAAAACCATCCTCACTG
GATTTTCTGAGCTGGAAACAATATAATTTCTATCCCCAATTTGGATTTTG
ATAGACATTATCATCCCCGCTGTAGGAAAAAGTTCCACTTGGGCTGTGAG
ACAGGAGTGTTGACCTGTGTACCCCCTTTTATACGAGCTCAACCTTCACT
TGTAAATTTTTTGAGAATCCCTCAAAATGGAGCTCAGTCCCTTAGTTCAC
TTTTTTATGATAATATCCGTTAGATTAACGGTGAAGGAAAGCTTTTATTA
CATCCCCTTCTTACAGACCCAATGAGACCCCTTCCCACTAGAAATATTGA
CCAAAATATCATCCCAAATAGAAAATAAGACTCAAATTGTCTCTGCTGAA
TATAATGTAATAAACAAATCCTAATTGCAAAATATTGTGCTATTTTTCTA
TTTCCATTGAATTTTCCGGCTTAAAAACAATGAAATTGGAAACCCCAGCC
ATAATAACTGCACCAAATTCCATTCTGTTTTTACTACCCCAACAGGAAAA
TTCTACCAGGTCTGTAAAAGGGCTGTGCTTTTTTGGATAGGGTTCTCAGC
GAATTATATTTTCATTTTTGTTTTGCTTCTTATGTAGTACCTTCTTTGAA
ACGACAAATACCAAAACAGAAAGACACGACGACACGACAGCTACGACAAC
TCCCGACAAACAACCGGCCTCTCTTACCATGGCAACAACTTTACAACGAA
TTATTACAACGGAAACGACAACAGACCGATCAACAGCGACAACGATCGTT
GATTGAACAAGAAAATTTACAGAAACAATTTTTACAACATACCACACAAC
CTATGGTACAACAGAGTGGACTTTATAAACCACAACAACTGGATAAAACT
GAACATAAAAAGCAATCGTTAACAGAAAATTTCGTCTTTAAGCGTCAGAA
ACAGCAACAACAGCCACAACAAAGACGACTGAATAGACGACAGTTCACAC
AACCTATACAACCACCAACATTTACATTATTACCAACCCAGAAACAAAGA
CAGGACTTACAACAGAAAGAACTTATACGACGTACACAACAGCAATTTGC
GTACATGAAATGGTTTACAGCTTTAAAAGAACACCAACAACAGTTACTAC
ATCAACAACAGCCTGCGATTAAGCGAAAACAAGACAAGATACAACCAACA
ACATCATACATTACACAGGCGTTGGGCTACAATCCAAAGTCGCCATTCAC
TAATTACCCACTCTCACCAGGAAGAGGGAAAGTTACGAACCAGTTTGCTT
TCAAAACTCAGCAGCAAAAGGCAGCAAAGATTACGACAAAAGCTACAAAA
ATGCCACCGAAAACTGACTGGAAAATTTTGAAAATACCAAAAGGGCTTCT
TCAGTTGAAAAACAAAAACAAACCTATTAAAGCAAGAGAAAATAATAAAG
CTCATGAGAAACTTGTCTTTAAAATACAAAGCCATCCTTCTAAGACAAAA
TCTGTAGTCCGACCACTAAAGAACGCTGAAAAAATCTTAAAAGTCATGCA
CCAAAAATCACCTAATAAACAACACACTCCATATATTGCTGCAGTAAAAA
TCCGGCAAAAACTACAGCCAAAACAAATAACAAACAGTAAAGTGACACTC
GTTGAAAATAAGATATCACCAAAGATATCACCGAAAAAATCCAATAAAAT
GTTGAATGATGGTGAGAGATCACTAGGGAAAGGAATGGAGGATGAAAAAT
CAAAAACCCAATTACAAGATTTACTAAAAACAATCAAAATAAGCGATTTT
CAAAAATTACATGGGAAAACGCACCAAATCAAATCAAATAAATCAAAGCC
TTTAAATACACCTTTACTAACCAAGGACAGTCAATCACGAAAAGGTAAAC
CAGACGTCGTAACTGTAGCTAAAACAAAGTCCCCAACAATTACTCAAATA
GAGACAACAACAACAACAATGACAACAGCAAACCAGGAACTACAAACGAC
ACCTGCCAACAATCAGCCATCAAAGAATGACAACAAAATCCCTCCTCCAG
AGATCAAAACAAACACTGAACTCGAGCAAGCGTTACAGAACTTACTATCA
ACCGACACACAACAGAACATAAACAGTTATTACCCAAATTATGCTTCACC
ATACTACGACCAAAATGCAGTACAAACACAACCCAATTTCTACATTCCAC
CTTCCACCTATCCATGGTGGCAACAACCTTATAGAGAATATGGTAGAAGT
GTTATCCAAGACTTACCAGGAGCTTTTAATCCACATATGACTTCTTTTCC
ATCTTTCAGCCAGCATATAGATGATTCAAGGGTCCGGAAAACATTTGTTG
ATGAGGAAGCTAAAATTGCGGAGAGTGAGGATGGTATACGTTCGTTTTTA
AGTAAACACAAAAGTGATACCTCATTGTTCCAGAATGAAGTGGAGGCAAA
GGACGATATTTTACCTTCTGAAGGAGGACCTGGTAGTCCTGAAAACGGAC
ATTTATTAACTTTGAAAGACTATGAAGCATTTATTGCGCACCCTACGAAT
TCCTCTTTAAAGTCTATCGAGAATTCGCCTGAAGTGGAGCTTCAGGAGCC
TGGGGAGACTCGAACAATGGATAATATAGTCAACGGTGACGATGATGATG
AGGTTATCGCAGAGGCTAAATTAATCAAGGAACAGAGTCTAGCCAAAGCA
GCCATTCAATCAGATAACGGGCGACGTAAGGATGTGTTAAGAGAACAAGA
ATCATTACGGAAACTTGAGCATGATAAATTGATTGAGAGATACGGTCATC
CACCTGCCAACCCCATGGAATATCTAGCACAAGTCTTTCAAGAGTTGGAT
GATGATACGAAAAACTTGGAAACAGCGAATGCAATAAAGAAAGAGGACAT
TCAAAATGGCAGCAAAGCTGCCTCTGGTATTGATAATCGTAAAGTGGCTC
AATCACCCTCTGAGCCTATCTTAGGCGAAACAAAATCGACTTTAGAACTC
AAATCAAGTGATAATCAAACTTCTAAAACACTTAATATAAATTCAACAGA
TTCTGGCGTAAATGATGCAAATCAGACTTTATCAAGAAACGGCGCTTCAT
TAAAAGGTGTCGATCCTTTAACTGTCAAAAATGATGATTCATCTTTACTA
GATTCTGTTTTTGAAAAAATCAACGTTCAAAAAGATAATAGTACAACCAA
GGTTAAGCGATCCCCGATCATTGATGCTGACCTTGAACCGTGGACGAACA
GACATAAATATAACCAACCTATAAATATACCAAACTCTGATAAAGCAAGT
TTGACCAGTACAAAGTTTCCATTAGGAGATATAGCTGATATAGCACAGCA
GGTCAATAAAAGAAGCGATATTCCCAAAGCTTGGACAGCAGATGATGGTG
TTTCTATGGGAGCAAACACAGACCATTCTAGACTAACATATTCGGAGGTT
AAAAGACTTTTTACAGATATTGAATCAAATAAGAAAGGATCTTTATGGAA
GCTCTCTGTCACTAAAAGATCAAATGGTTTGAAAGGAGAGACAAATGCGA
AATTATTGGTCAACGAAGGGAATGCTGATGGATTTTTAAGATAGTCGAAA
ATCTTGATAATAAAGTAAAGTCTCGAACCACTATAACTCGAATGTCTCCT
TAACTAGAACACGTTCTTTTGTCCATTCAGTTAATAATATCTTAGAAACC
TTACTCCATATCTCGAAATTTCCATAACTCGAACAAATTTGTATTCCTTG
TGCGTGTTCGAGTTATGGAGACTCAACTGTATCGTTATTGAACATGTTAT
GTGAACATCCTGTGACTTTAATTCTTTGGTTAAATGGTCAAGAAGGGTTT
TTGCCAAGTCTGTACCAAACCGATTTTCACATCAGCTCTAATGTTTTCCA
AGTGAACAACTTTTTAACAATTATTTCATAATTTTCTAAAGATTTCGTTG
GTCATTGACTTATCCACACCTAAATTGTACAAAAATGAATTTTTGCTTCG
GAATTTCACTATTATAAAGTTTTTTTCCCCTTTTTTGGAATTCATACATG
AAAAATCAAATTAGTCAAAAAGAGGAACAAAACCTAAAAAATCGGTATCG
GAATAGTATTTCTTACGGAATCTCGGAAATTTTAGCAAAATTATTCGGTA
TTTCGGAAATCGCAAACTCCATACGCCCCCTCCCCCTTCTAAGGTTGTCG
TGGTGATCATTTCGCTTAATTTCAGGATTTTTATACCTTAAATACTGCAG
ATGGGGAAAAGAGGGAACAAATTTGGCGATTCAACCAAATTAGTTGTCAT
TAAAATACAGTTGCCTCTCTCTAATTTGATCTTTAAAGGATTACAACTTT
GCTTCGAATTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070686-exon-scaffold_57-1575043694:516340..516359 | TCONS_00070686-exon-scaffold_57-1575043694:516340..516359 | Clytia hemisphaerica | exon |
| TCONS_00070686-exon-scaffold_57-1575043694:516024..516137 | TCONS_00070686-exon-scaffold_57-1575043694:516024..516137 | Clytia hemisphaerica | exon |
| TCONS_00070686-exon-scaffold_57-1575043694:510146..513872 | TCONS_00070686-exon-scaffold_57-1575043694:510146..513872 | Clytia hemisphaerica | exon |
| TCONS_00070686-exon-scaffold_57-1510915933:516340..516359 | TCONS_00070686-exon-scaffold_57-1510915933:516340..516359 | Clytia hemisphaerica | exon |
| TCONS_00070686-exon-scaffold_57-1510915933:516024..516137 | TCONS_00070686-exon-scaffold_57-1510915933:516024..516137 | Clytia hemisphaerica | exon |
| TCONS_00070686-exon-scaffold_57-1510915933:510146..513872 | TCONS_00070686-exon-scaffold_57-1510915933:510146..513872 | Clytia hemisphaerica | exon |
| TCONS_00070686-exon-scaffold_57-1491911889:516340..516359 | TCONS_00070686-exon-scaffold_57-1491911889:516340..516359 | Clytia hemisphaerica | exon |
| TCONS_00070686-exon-scaffold_57-1491911889:516024..516137 | TCONS_00070686-exon-scaffold_57-1491911889:516024..516137 | Clytia hemisphaerica | exon |
| TCONS_00070686-exon-scaffold_57-1491911889:510146..513872 | TCONS_00070686-exon-scaffold_57-1491911889:510146..513872 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_57 | supercontig | scaffold_57:510146..516359 - |
Blast
The following BLAST results are available for this feature:
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