TCONS_00070680 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00070680
Unique Name	TCONS_00070680
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3763

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_57:422592..426354-

transcript sequence

>TCONS_00070680 ID=TCONS_00070680|Name=TCONS_00070680|organism=Clytia hemisphaerica|type=transcript|length=3763bp
GTAGTGTAGACATGTCATATATTATCTGCAGAGAAGAGTAAacaattttc
actgaatttgaTAGTAGTAAATTTAACTGGAAATAAATTAATCCTTTTTT
TAAGTgagaataaaacaaaaaaaatatggaTTGAATTAAAACAATAATTT
GAGTAAAATCAACTTTTGTCATGGCTAACCCTAAAAGACCAATAGGGACT
GCAAGCCCTAACACCATCAATGCAGTTGTGCCTATGTGTACAAACCAAAG
TAGCTCATCAAAGCATGGTAGTTCTAGTCCAAACAACCCTGATTTGGCAT
CATTATTTGAATgtccagtttgttttgattatgtTTTACCGCCAATTTTC
CAATGTAGCAGTGGGCATTTAGTATGTTCAAATTGTCGGCCAAAATTGGC
AGGAATCTGTCCAACATGTAGAGGACCTTTAGGGAGTATTCGTAATTTGG
CAATGGAAAAAGTTGCAAATACTGTTTTGTTTCCATGCCGTTATGCAAAT
AATGGATGTATTGTTGCTTTACCGCATACACAGAAAAGTGAACACGAAGA
AGGATGTGAGTTTCGTCCTTATGCTTGTCCTTGTCCTGGAGCATCATGCA
AATGGCAAGGTTCTTTAGATGCAGTCATGCCTCATTTAGTACATGCGCAC
AAGTCAATAACAACATTACAGGGTgaagatattgtatttttagcGACAGA
CATTAATTTACCAGGTGCGGTTGATTGGGTTATGATGCAATCATGTTTTG
GCCATCACTTCATGTTGGTCCTGGAAAAACAAGAACGATTTGAAGGACAT
CAACAATTTTTTGCTGTGGTTCAACTGATAGGGAGCCGAAAACaagctga
aaattttgcttACAGACTTGAATTGAATGGCCGTCGAAGGAGGCTTGCAT
GGGAAGCTACCCCAAGAAGCATCCATGATGGGATCCAATCAGCAATCATT
AATAGTGATTGCCTGGTGTTTGATACCAGCATTGCTCAATTATTTGCTGA
AGCTGGTAATCTTGGCATTAATGTGACTATCTCAATGTGTTGAGATGAAC
TAGTGTAGTTAGATTATgcatttgaaaacaaagaagtGGATATGATGAAT
TAAACTGGGGTAATAAATTCATATTCAATTCATGAATGCTGGTTTATATG
aaaagtttttataattttgagaGGTATCATGAAACATGTTTTACTGCAGC
TTGTTTACTTCAACCTGTTAGAAAATCTTACAGCGCCAActtttttagat
tatttttacagaatttcgcTTCTATTTTATGGAACAGCTTCCTTGGTTAT
tcctttttaacattttcatctTTGGTCTAGCTTTTATCAATGTACGAATC
AgccttttaaatttcaaataaaaaaggtttttttaatcTAGGNGGGAGTA
TTCGTAATTTGGCAATGGAAAAAGTTGCAAATACTGTTTTGTTTCCATGC
CGTTATGCAAATAATGGATGTATTGTTGCTTTACCACATACACAGAAAAG
TGAACACGAAGAAGGGTGTGAGTTTCGTCCTTATGCTTGTCCTTGTCCTG
GAGCATCATGCAAATGGCAAGGTTCTTTAGATGCAGTCATGCCTCATTTA
GTACATGCGCACAAGTCAATAACAACATTACAGGGTgaagatattgtatt
tttagcGACAGACATTAATTTACCAGGTGCGGTTGATTGGGTTATGATGC
AATCATGTTTTGGCCATCACTTCATGTTGGTCCTGGAAAAACAAGAACGA
TTTGAAGGACATCAACAATTTTTTGCTGTGGTTCAACTGATAGGGAGCCG
AAAACaagctgaaaattttgcttACAGACTTGAATTGAATGGCCGTCGAA
GGAGGCTTGCATGGGAAGCTACCCCAAGAAGCATCCATGATGGGATCCAA
TCAGCAATCATTAATAGTGATTGCCTGGTGTTTGATACCAGCATTGCTCA
ATTATTTGCTGAAGCTGGTAATCTTGGCATTAATGTGACTATCTCAATGT
GTTGAGATGAACTAGTGTAGTTAGATTATgcatttgaaaacaaagaagtG
GATATGATGAACTAAACTGGGGTAATAAATTCATATTCAATTCATGAATG
CTGGTTTATATGaaaagtttttataattttgagaGGTATCATGAAACATG
TTTTACTGCAGCTTGTTTACTTCAACCTGTTAGAAAATCTTACAGCGCCA
ActtttttagattatttttacagaatttcgcTTCTATTTTATGGAATAGC
TTCCTTGGTTATtcctttttaacattttcatctTTGGTCTAGCTTTTATC
AATGTACGAATCAgccttttaaatttcaaattgaaaaggtttttttaatc
TAGATGgaaaaattcacatttttacATGAAATGATTTGTTCTTTGCaaaa
tgttttggttcaatGAAAGTTTCGATGATTTTGCATTTGAATACACCTAT
AAACCCTTAAAGCCTAAGGAGACTTTAGAGTTTCACAGGCGGTACGAACT
TCAAAGCTCTTTGATGATGAGTAAATATCAATGCACAGCTTTAAGGGGTA
ATTAATCTCACAagagatcatccattctgcacATACCACGCTCTGCTCCA
AAGGACTAAGGTGAATTTGGCAATCTGACTTGGTGTTTCAGAAAAGCGAA
ACTatcaaaatggcaatacctttGCTTGAAGGAGAAAGCGACTGGGTCCT
AATGCGATTGGTTTAAAGTTCAAAGTGGTGCGCCAACCTGAGCAGATTCT
TTTACTGAGCCATGGCCTTTAGAGTAAATACCTGCCATGCGCGGAGTATA
AGAATTTATTCGTAGATTAAGAGTTGATAGGTGTATTAGAACTAACTTGA
TCACTGAGATTGTTTACTTTTATCATGTATGTTAAGGTCTGGTAAGGAAT
CTATTCTTGtacatatttattttgaaattatacatttttagcagtttttt
tcttgttcctttgATAGATTTGATACTTAGTTTTTTTTCAGTTCCAGGTG
CTTTGTTTGGTATTATTTTTCCcatgatattttgaaatttcattattcaa
GACATTTTTAAAATAGTTACATAGCTACTCTTCAAGCATTTCGGGGGCGA
AAATATTTATCCAATTGGCTTAAAAGCTTGCAAGTCTGCACCAAATTTGA
ACTATTTGAGTCTTTGATACTTTGTAAATGCCAAAAATAGGACCCCCact
atttttttggtaaaatatggaCCGGTTTTTAAAATACCAACTACGTGACC
AAACTAAAAATTTGCCTTAAATGGTCAATATCCTGtcactggtgaaaatt
tcaagtcaaaggCTCCTGTAGTTCCTAAGTGCCTGCAGGGTTGACgtgta
ttttactgaccagTCTGCAAAATACCAAATACTTAAGTGACTGACAAACC
AGCCTTCAAAACTaatttcaatcaaatcaaacAAGTCGATCGGTCAATCG
GTGCAGGCACaacgcaccgggtacggcaggtacggcggCCGTCGGGAGAG
CTTTCACGAATCCAATTATAGAAATGACTTAATATTgttattttggtcat
ttttttgtgtttttatgacTGTTATATATAATATGATAAACAAGAAACAA
TATGAAGATGGCTTTTTTTAAGTTATTGATTTTTTATACATGTACAATGT
GCAATTTATTAGTTTCGTCCATACCTTGTTTATTATATTAGTTTTACAAA
AAATCTGaatatttgaatgaaaaataatacaaaaatacaTTGTGTTGACT
AAATTTCTATTTC

Run BLAST on NCBI

transcript from alignment at scaffold_57:422592..426354-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00070680 ID=TCONS_00070680|Name=TCONS_00070680|organism=Clytia hemisphaerica|type=transcript|length=3763bp|location=Sequence derived from alignment at scaffold_57:422592..426354- (Clytia hemisphaerica)
GTAGTGTAGACATGTCATATATTATCTGCAGAGAAGAGTAAACAATTTTC
ACTGAATTTGATAGTAGTAAATTTAACTGGAAATAAATTAATCCTTTTTT
TAAGTGAGAATAAAACAAAAAAAATATGGATTGAATTAAAACAATAATTT
GAGTAAAATCAACTTTTGTCATGGCTAACCCTAAAAGACCAATAGGGACT
GCAAGCCCTAACACCATCAATGCAGTTGTGCCTATGTGTACAAACCAAAG
TAGCTCATCAAAGCATGGTAGTTCTAGTCCAAACAACCCTGATTTGGCAT
CATTATTTGAATGTCCAGTTTGTTTTGATTATGTTTTACCGCCAATTTTC
CAATGTAGCAGTGGGCATTTAGTATGTTCAAATTGTCGGCCAAAATTGGC
AGGAATCTGTCCAACATGTAGAGGACCTTTAGGGAGTATTCGTAATTTGG
CAATGGAAAAAGTTGCAAATACTGTTTTGTTTCCATGCCGTTATGCAAAT
AATGGATGTATTGTTGCTTTACCGCATACACAGAAAAGTGAACACGAAGA
AGGATGTGAGTTTCGTCCTTATGCTTGTCCTTGTCCTGGAGCATCATGCA
AATGGCAAGGTTCTTTAGATGCAGTCATGCCTCATTTAGTACATGCGCAC
AAGTCAATAACAACATTACAGGGTGAAGATATTGTATTTTTAGCGACAGA
CATTAATTTACCAGGTGCGGTTGATTGGGTTATGATGCAATCATGTTTTG
GCCATCACTTCATGTTGGTCCTGGAAAAACAAGAACGATTTGAAGGACAT
CAACAATTTTTTGCTGTGGTTCAACTGATAGGGAGCCGAAAACAAGCTGA
AAATTTTGCTTACAGACTTGAATTGAATGGCCGTCGAAGGAGGCTTGCAT
GGGAAGCTACCCCAAGAAGCATCCATGATGGGATCCAATCAGCAATCATT
AATAGTGATTGCCTGGTGTTTGATACCAGCATTGCTCAATTATTTGCTGA
AGCTGGTAATCTTGGCATTAATGTGACTATCTCAATGTGTTGAGATGAAC
TAGTGTAGTTAGATTATGCATTTGAAAACAAAGAAGTGGATATGATGAAT
TAAACTGGGGTAATAAATTCATATTCAATTCATGAATGCTGGTTTATATG
AAAAGTTTTTATAATTTTGAGAGGTATCATGAAACATGTTTTACTGCAGC
TTGTTTACTTCAACCTGTTAGAAAATCTTACAGCGCCAACTTTTTTAGAT
TATTTTTACAGAATTTCGCTTCTATTTTATGGAACAGCTTCCTTGGTTAT
TCCTTTTTAACATTTTCATCTTTGGTCTAGCTTTTATCAATGTACGAATC
AGCCTTTTAAATTTCAAATAAAAAAGGTTTTTTTAATCTAGGNGGGAGTA
TTCGTAATTTGGCAATGGAAAAAGTTGCAAATACTGTTTTGTTTCCATGC
CGTTATGCAAATAATGGATGTATTGTTGCTTTACCACATACACAGAAAAG
TGAACACGAAGAAGGGTGTGAGTTTCGTCCTTATGCTTGTCCTTGTCCTG
GAGCATCATGCAAATGGCAAGGTTCTTTAGATGCAGTCATGCCTCATTTA
GTACATGCGCACAAGTCAATAACAACATTACAGGGTGAAGATATTGTATT
TTTAGCGACAGACATTAATTTACCAGGTGCGGTTGATTGGGTTATGATGC
AATCATGTTTTGGCCATCACTTCATGTTGGTCCTGGAAAAACAAGAACGA
TTTGAAGGACATCAACAATTTTTTGCTGTGGTTCAACTGATAGGGAGCCG
AAAACAAGCTGAAAATTTTGCTTACAGACTTGAATTGAATGGCCGTCGAA
GGAGGCTTGCATGGGAAGCTACCCCAAGAAGCATCCATGATGGGATCCAA
TCAGCAATCATTAATAGTGATTGCCTGGTGTTTGATACCAGCATTGCTCA
ATTATTTGCTGAAGCTGGTAATCTTGGCATTAATGTGACTATCTCAATGT
GTTGAGATGAACTAGTGTAGTTAGATTATGCATTTGAAAACAAAGAAGTG
GATATGATGAACTAAACTGGGGTAATAAATTCATATTCAATTCATGAATG
CTGGTTTATATGAAAAGTTTTTATAATTTTGAGAGGTATCATGAAACATG
TTTTACTGCAGCTTGTTTACTTCAACCTGTTAGAAAATCTTACAGCGCCA
ACTTTTTTAGATTATTTTTACAGAATTTCGCTTCTATTTTATGGAATAGC
TTCCTTGGTTATTCCTTTTTAACATTTTCATCTTTGGTCTAGCTTTTATC
AATGTACGAATCAGCCTTTTAAATTTCAAATTGAAAAGGTTTTTTTAATC
TAGATGGAAAAATTCACATTTTTACATGAAATGATTTGTTCTTTGCAAAA
TGTTTTGGTTCAATGAAAGTTTCGATGATTTTGCATTTGAATACACCTAT
AAACCCTTAAAGCCTAAGGAGACTTTAGAGTTTCACAGGCGGTACGAACT
TCAAAGCTCTTTGATGATGAGTAAATATCAATGCACAGCTTTAAGGGGTA
ATTAATCTCACAAGAGATCATCCATTCTGCACATACCACGCTCTGCTCCA
AAGGACTAAGGTGAATTTGGCAATCTGACTTGGTGTTTCAGAAAAGCGAA
ACTATCAAAATGGCAATACCTTTGCTTGAAGGAGAAAGCGACTGGGTCCT
AATGCGATTGGTTTAAAGTTCAAAGTGGTGCGCCAACCTGAGCAGATTCT
TTTACTGAGCCATGGCCTTTAGAGTAAATACCTGCCATGCGCGGAGTATA
AGAATTTATTCGTAGATTAAGAGTTGATAGGTGTATTAGAACTAACTTGA
TCACTGAGATTGTTTACTTTTATCATGTATGTTAAGGTCTGGTAAGGAAT
CTATTCTTGTACATATTTATTTTGAAATTATACATTTTTAGCAGTTTTTT
TCTTGTTCCTTTGATAGATTTGATACTTAGTTTTTTTTCAGTTCCAGGTG
CTTTGTTTGGTATTATTTTTCCCATGATATTTTGAAATTTCATTATTCAA
GACATTTTTAAAATAGTTACATAGCTACTCTTCAAGCATTTCGGGGGCGA
AAATATTTATCCAATTGGCTTAAAAGCTTGCAAGTCTGCACCAAATTTGA
ACTATTTGAGTCTTTGATACTTTGTAAATGCCAAAAATAGGACCCCCACT
ATTTTTTTGGTAAAATATGGACCGGTTTTTAAAATACCAACTACGTGACC
AAACTAAAAATTTGCCTTAAATGGTCAATATCCTGTCACTGGTGAAAATT
TCAAGTCAAAGGCTCCTGTAGTTCCTAAGTGCCTGCAGGGTTGACGTGTA
TTTTACTGACCAGTCTGCAAAATACCAAATACTTAAGTGACTGACAAACC
AGCCTTCAAAACTAATTTCAATCAAATCAAACAAGTCGATCGGTCAATCG
GTGCAGGCACAACGCACCGGGTACGGCAGGTACGGCGGCCGTCGGGAGAG
CTTTCACGAATCCAATTATAGAAATGACTTAATATTGTTATTTTGGTCAT
TTTTTTGTGTTTTTATGACTGTTATATATAATATGATAAACAAGAAACAA
TATGAAGATGGCTTTTTTTAAGTTATTGATTTTTTATACATGTACAATGT
GCAATTTATTAGTTTCGTCCATACCTTGTTTATTATATTAGTTTTACAAA
AAATCTGAATATTTGAATGAAAAATAATACAAAAATACATTGTGTTGACT
AAATTTCTATTTC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043972	XLOC_043972	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00070680-exon-scaffold_57-1575043694:422592..426354	TCONS_00070680-exon-scaffold_57-1575043694:422592..426354	Clytia hemisphaerica	exon
TCONS_00070680-exon-scaffold_57-1510915933:422592..426354	TCONS_00070680-exon-scaffold_57-1510915933:422592..426354	Clytia hemisphaerica	exon
TCONS_00070680-exon-scaffold_57-1491911889:422592..426354	TCONS_00070680-exon-scaffold_57-1491911889:422592..426354	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_57	supercontig	scaffold_57:422592..426354 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0366127	0.0357032	0.0414548	0.0811141	0.888738	1.59967	0.800215	1.3661	0.830635	1.37578	0.773525	0.413468	0.65745	0.32874	0.0207899	0	0	0.0281713	0.0389202	0	0	0	0.0419794	0.0381654	1.45445	1.54364	0	0.0535783	0.0404101	0.0826334

Blast

[Close]

BLAST of TCONS_00070680 vs. Swiss-Prot (Human)
Match: SIAH1 (E3 ubiquitin-protein ligase SIAH1 OS=Homo sapiens GN=SIAH1 PE=1 SV=2)

HSP 1 Score: 469.544 bits (1207), Expect = 7.397e-155
Identity = 219/253 (86.56%), Postives = 238/253 (94.07%), Query Frame = 3

Query:  282 NNPDLASLFECPVCFDYVLPPIFQCSSGHLVCSNCRPKLAGICPTCRGPLGSIRNLAMEKVANTVLFPCRYANNGCIVALPHTQKSEHEEGCEFRPYACPCPGASCKWQGSLDAVMPHLVHAHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQERFEGHQQFFAVVQLIGSRKQAENFAYRLELNGRRRRLAWEATPRSIHDGIQSAIINSDCLVFDTSIAQLFAEAGNLGINVTISMC 1040
            +N DLASLFECPVCFDYVLPPI QC SGHLVCSNCRPKL   CPTCRGPLGSIRNLAMEKVAN+VLFPC+YA++GC + LPHT+K++HEE CEFRPY+CPCPGASCKWQGSLDAVMPHL+H HKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFG HFMLVLEKQE+++GHQQFFA+VQLIG+RKQAENFAYRLELNG RRRL WEATPRSIH+GI +AI+NSDCLVFDTSIAQLFAE GNLGINVTISMC
Sbjct:   31 SNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKLT-CCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTISMC 282

HSP 2 Score: 384.8 bits (987), Expect = 5.761e-123
Identity = 176/203 (86.70%), Postives = 194/203 (95.57%), Query Frame = 2

Query: 1394 GSIRNLAMEKVANTVLFPCRYANNGCIVALPHTQKSEHEEGCEFRPYACPCPGASCKWQGSLDAVMPHLVHAHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQERFEGHQQFFAVVQLIGSRKQAENFAYRLELNGRRRRLAWEATPRSIHDGIQSAIINSDCLVFDTSIAQLFAEAGNLGINVTISMC 2002
            GSIRNLAMEKVAN+VLFPC+YA++GC + LPHT+K++HEE CEFRPY+CPCPGASCKWQGSLDAVMPHL+H HKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFG HFMLVLEKQE+++GHQQFFA+VQLIG+RKQAENFAYRLELNG RRRL WEATPRSIH+GI +AI+NSDCLVFDTSIAQLFAE GNLGINVTISMC
Sbjct:   80 GSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTISMC 282

The following BLAST results are available for this feature:

BLAST of TCONS_00070680 vs. Swiss-Prot (Human)

BLAST of TCONS_00070680 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SIAH1	7.397e-155	86.56	E3 ubiquitin-protein ligase SIAH1 OS=Homo sapiens ...	[more]

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TCONS_00070680 (transcript) - C. hemisphaerica