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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070677 ID=TCONS_00070677|Name=TCONS_00070677|organism=Clytia hemisphaerica|type=transcript|length=2291bpRun BLAST on NCBI protein sequence of TCONS_00070677-protein >TCONS_00070677-protein ID=TCONS_00070677-protein|Name=TCONS_00070677-protein|organism=Clytia hemisphaerica|type=polypeptide|length=577bp MAEGNNEIDSPKGAERFRNAARKVSKLSATVDIWQQQAKTLKSGLDIPTVRun BLAST on NCBI transcript from alignment at scaffold_57:400240..422081- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070677 ID=TCONS_00070677|Name=TCONS_00070677|organism=Clytia hemisphaerica|type=transcript|length=21842bp|location=Sequence derived from alignment at scaffold_57:400240..422081- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_57:400240..422081- >TCONS_00070677 ID=TCONS_00070677|Name=TCONS_00070677|organism=Clytia hemisphaerica|type=CDS|length=24276bp|location=Sequence derived from alignment at scaffold_57:400240..422081- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070677 vs. Swiss-Prot (Human)
Match: CTSR4 (Cation channel sperm-associated protein 4 OS=Homo sapiens GN=CATSPER4 PE=2 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 1.898e-47 Identity = 115/331 (34.74%), Postives = 198/331 (59.82%), Query Frame = 1
Query: 514 EVAEFVSKELVGKVVESRCFRFTILFLIIVNSLLIMLETDRTLEREWGRAFKIMDEIIMSVFICEILLKWYHGFFKFFTQGWNILDFLIVLSLIVGPMIMGGSGGQNVLRILRVLRAFRSLRSISSLPGLQVVVQTILQSVPDMTNXXXXXXXXXXXXXXXGITLFREVMPHHFGDLSTAMFSLFICVTQDGWMEIFEAFQQHGDLHYY--GGGLFLVLFISIGAFIFANLXXXXXXTNLECAVKDVREEEQMQAKQLALKGGDLGDKVNNIP-VDLVNDDQIPNRVFQEQAPLVIPNLTGVDIRNIEHYCLVLEAMERNLHAYQQLKSDL 1497
++ EF++ + +++ F+ + L+++N++ I L T+ L+++ F +D+I++++ +CE+LL W +GF+ F+ GWNIL+F+IV L++ I N+ I LRA R + ++ L +++ ILQSVPDM NI++L++ MLVFSV G+TLF +P HF ++ A+++LFIC+TQDGW++I+ FQ + GG ++ +FI+IGAFI NL V VV TNLE +K E+ Q Q + G + ++ + +P V V + + QE PL L+ + +++CLVLEA++ NL Y++++ +L
Sbjct: 75 DMQEFITHMYIKQLLRHPAFQLLLALLLVINAITIALRTNSYLDQKHYELFSTIDDIVLTILLCEVLLGWLNGFWIFWKDGWNILNFIIVFILLLRFFI----NEINIPSINYTLRALRLVHVCMAVEPLARIIRVILQSVPDMANIMVLILFFMLVFSVFGVTLFGAFVPKHFQNIQVALYTLFICITQDGWVDIYSDFQTEKREYAMEIGGAIYFTIFITIGAFIGINLFVIVVTTNLEQMMK-AGEQGQQQRITFSETGAEEEEENDQLPLVHCVVARSEKSGLLQE--PLAGGPLSNLSENTCDNFCLVLEAIQENLRQYKEIRDEL 398 The following BLAST results are available for this feature:
BLAST of TCONS_00070677 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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