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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070675 ID=TCONS_00070675|Name=TCONS_00070675|organism=Clytia hemisphaerica|type=transcript|length=2511bpRun BLAST on NCBI transcript from alignment at scaffold_57:367496..398133- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070675 ID=TCONS_00070675|Name=TCONS_00070675|organism=Clytia hemisphaerica|type=transcript|length=30638bp|location=Sequence derived from alignment at scaffold_57:367496..398133- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00070675 vs. Swiss-Prot (Human)
Match: PKHF2 (Pleckstrin homology domain-containing family F member 2 OS=Homo sapiens GN=PLEKHF2 PE=1 SV=1) HSP 1 Score: 325.479 bits (833), Expect = 3.558e-104 Identity = 149/221 (67.42%), Postives = 176/221 (79.64%), Query Frame = 3
Query: 141 MVDRLANTEENNRRMKHVEDCFGTSGQSLVSVGRVLVGEGVLTKLCRKKPKPRQFFLFNDILVYGTILISKKKYANQHIIPLQEVKIITLEDDGNFKNGWQIISPSKSFAVYAATPTEKAEWMAHINKCINDLLKKTGKKPSGEEAAVWVPDQSANVCMLCQKTKFTTIVRKHHCRRCGSVVCGNCSSKRFLIPHISSKPVRVCDQCYDKMSSGAVKPDEP 803
MVDRLAN+E N RR+ VE+CFG +GQ L GRVL+GEGVLTKLCRKKPK RQFFLFNDILVYG I+I KKKY QHIIPL+ V I +++D+G+ +NGW I +P+KSFAVYAAT TEK+EWM HINKC+ DLL K+GK PS E AAVWVPD A VCM CQK KFT + R+HHCR+CG VVCG CS KRFL+P SSKPVR+CD CYD +S+G + +P
Sbjct: 1 MVDRLANSEANTRRISIVENCFGAAGQPLTIPGRVLIGEGVLTKLCRKKPKARQFFLFNDILVYGNIVIQKKKYNKQHIIPLENVTIDSIKDEGDLRNGWLIKTPTKSFAVYAATATEKSEWMNHINKCVTDLLSKSGKTPSNEHAAVWVPDSEATVCMRCQKAKFTPVNRRHHCRKCGFVVCGPCSEKRFLLPSQSSKPVRICDFCYDLLSAGDMATCQP 221 The following BLAST results are available for this feature:
BLAST of TCONS_00070675 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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