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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070669 ID=TCONS_00070669|Name=TCONS_00070669|organism=Clytia hemisphaerica|type=transcript|length=2084bp
GCTCATCAGATTATTCATCCCCTTGTTAACTCAATACCACACCCACTTCC
ACCACCACCATCCTCTGTAGGGCCACCGGGAAGCCACCAACAAGCACAGG
TTGAGGAGGATGATGACCATGTGAAGCGACCAATGAATGCTTTCATGGTA
TGGTCACGAACAGAGCGACGAAAACTGGCACTCAAATTCCCAAATATGTT
AAATTGTGAAATCTCCAAATTATTGGGCGCTGAATGGTCTCGTATGTCTG
ACGAGGATAAATCACCTTATGTTCAAGAAAGCAAAAGATTAAGGACAATT
CACAGTCAAAAATATCCCGATTACTCTTACAAACCAAGACGGAGGAAACG
AAAAACGCAACAAAGCCAACCGCCCTATCCATCAATTAACTTCCAAAGTG
CATCCGCCAACATCCCACCACCCTACCAATATCCACCTGCAGCAGGATTC
GCAAAAATCTCATCAGATGCATTTAAAATGTCCAGCTTTGGTGGTGGTGA
AAGTGGCTTTCCAGTACCGCCCCTTAACGATCCAGGAAAAGCACTCAGCT
ATCTTAATTCAGCTGCCGCCATTGGATTACCAGATATGAAATCATACTAT
AGTCTCGCACCGCCCAATCCAAATCTCTTTCCGCCCTCCTCGTCAAACAG
CTATACCTCACTGTCATTGACTGGGAACACACCAACTAACTTATATTCGT
CCTCCAATACTTACATGCCAGCCATGTTTAAGGACGGACCAAGCCATTAC
TGAAAAAACGTCTCATTTGACTCTAAGAATAAGACTaagtatttttaatc
aaaaaaaaaatttgaagcaCAGTTTTGGTCAAGATAATCCCTCATGAAAA
ATAAGTACAGTATGTCAATCGGTTGTGATAATTACAGTACTTCTTAACCA
GAAGTTTAAACATCTTACGAAAGGTCAATCGTGTACATAAACCAAACAGA
TTATATTTATTCTCAAGGTCattgtgaatcaaaattgattTGAACCTGGG
ATTCTAATCGCAGATTATTGCTAATAAGGATGGCTCTAATTCGTTGTTTC
AAGATATTTATCATTTGCTGAAACCATGTTCTCAATGCATGACCATGACT
ATTAATCTATGATATTATAAAATCAAACGTATTTAAAATATTATTCAAAT
TGCACCAAAGCACTGGTTGTCACATGACCTAAAAGCCAATTAGTTATGGT
GCTTCAAAAGCTTTTATACTGGATTATTGCTGTTGGCACCTTCAAAAACA
GACAATATCAAGTCAAATTTCAAGCTTGATAAAGGCATGTAAAGTTTATA
TCAGAAAGTAAATGTCAGTATCGGATCTGAGGAGGAGGGCTCAAAATTTA
TATCGGAGAGTCTTAATTTCCTTATAAGGAGTATGGATAAAAGAAACACT
CTCCATCGTTGATTTTGAACCGCTTTTAGATCCGCTGCTGAATGTAAACA
GAGGAAGACTTTTTATACTCGATTTTCATAATATTCATGATGTACTCTTT
TATATACGGAAACATGTGCCATTTTTGGTTAAACTCTAAAGTGGTAATTT
CACAGCAGATCTTCAACAACACCCATCCCTGAAAAGTTTTAGCTCGGGGT
TTCGGAAACACATCTTCTATATAGAAACTTGGAGAATAGACCTTTACATA
AATTACGCCACGAACATAAAAATactgccatggtgattaactaccagagg
attttattaaaactactttctattcataaaaaaatcatttaatctctcaa
gggacataatcatcATGGTacttgtttgaatacgaggcaattgatgttcg
tgacgtaatttaaaaaattcttattaaTCTTGTAAAGACTCGATCCTTTT
CAaatgtttccgtataaaagattacgtcatgtatttcatgaattttaggT
CTTTTTCACACCATCAGTTTTTATAAATTCTTTTAAGCTGGActtttttt
gtatatattttttctctgCATCCACAtatataaaataattcttttgtgtA
CCTATTGTAAATAAAGAAAGCATTCATTCATATTGTAAATTTTCAATAGC
TTTaggtgaaaaagttttttcgactGAAAATTAT Run BLAST on NCBI transcript from alignment at scaffold_57:358062..362348- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070669 ID=TCONS_00070669|Name=TCONS_00070669|organism=Clytia hemisphaerica|type=transcript|length=4287bp|location=Sequence derived from alignment at scaffold_57:358062..362348- (Clytia hemisphaerica)
GCTCATCAGATTATTCATCCCCTTGTTAACTCAATACCACACCCACTTCC
ACCACCACCATCCTCTGTAGGGCCACCGGGAAGCCACCAACAAGCACAGG
TGAATTGATCTTTTTTTCAAGGGTTTTGCTTTGTTTTTTGATAGGCTGGA
AAATGAGAAATTAACTCAAGCGAATTTTAGATCTTAGCCTGGCGAATTCT
TAGCAAGCCCATTGTATTTATCAGCGTGAGTATGTCGGTACAAAAATATT
GATAAAAAACGGGTTGTCCAAAACAATGTTTTAAAAACTAATGGATATTG
TTTTGAGGATGAAAATTACATGAGTGTAATAGTAAAGAGTGTATCTTTCA
GAAAATAGCAATATATTCACCGAAAGAGTGGCATAGGATGAAATACCACT
TTTTATGTCACCCGAAATCGAAAATCGTGGAATTCTTCATCCTTTTTGGA
CCTACCGGGAGGTCCTTTAATTTGACCGTTGTCCGTTCGTCTGTTACAAG
CTTTTCTCGGGATTGGCTCATTAGTTTTTTTTAATTTTTTGCACAATGAT
ACAAAATAGCAATGCCTGAAAAGTGACGGAGCCCGATTTTTGAAAAAAAA
ATTTGGGGTGCAAATTTGGGCCAAAATCTACCTAAAAATAAGGTTTTTTG
GACTTGGTGCAAAATTGCTTCATTAGTTTTTCCTGATTTTTGGCAGAAAT
ATAGAGTGCAAGGTACCCNACATGTGCCAAAAAATGGGGTTTTTTGGACT
TTGTGTGAAATTGCTTCATTAGTTTTTTCAAATTATATCTAAAACGTAAC
TCAAGCTTTTTTTTCCGGAAAAATTTTTTTGGCTGTAAAAATCGGATTTT
CTTATTTGGGGAAACTCCCTTTTGTCATATTTAGGGAAAATGAGCATTTC
TAGAGATTGGCTTGGTGTTTTTTTCTTATTTTTTGCATAGTGCTATAATA
TGGTAATATTTAATTTCTGATGGAGCCTGATTTTCGAAAAAATAATTTTT
TGAGCAAATTTGGGCAGAAAAGTTCCTATATTCAAGCTGCTAATTACACT
TTCTTACTCTCTTGCTATTTGTCCTACTTTTATCTGATTTTGATCACCAG
GTAGGTCCATTCAGCATGTTGCTTGTTACTCCTTAAATTTAAATTTGAAA
ATTTATGGTATCAACAATAGATTTCCGAAGGGTTTAGATGATAAAACCGT
TTTAAAAATTGCTGTAGTAAAAATCAGAAAATCTTGAATTTCTGGACTAT
TTCATCCCAAATTACTCCGAAACCTATATCATTGGAATCTTCGTGGAAAA
ATACTTCATTTTTGAAAATAAGGTCTCAAAATTCCTAACATTAAAGTTCA
AGAGTTCTTTTGATTTGGAGACGTACGATAAACCTCCTCCAATCTGATCT
TAAAAATGCCAAGAATTTTTGCAAAGAAATTAGGATTTTCCAGACAAAAT
CTGTGCACCCATGTTGAGGAGGCCCATTACCGTTCCATGGGGATAGGTTC
TGAAATGCAGTGTCCATATGAGTAAAAATTGAAAATCTGTAAAGTTTCAG
AATTCCAGAGAGTAATGATTCTGTAATTGCCTCAAATTCCAAGGCGGTAG
GTCACAAAAAAGTAGACCTCGTCAACAGAGGGGGTACATGTTTTCTTTTG
CTAGAAAAGCTAATTGGGCAGTCGACCCCCTGGACATTCAAAATTACCCT
CAAACAGAGCAAGTTTACCCCCGGACAAGGCAAATTTTGTAGATTTTTCA
CTACCCCCGGTAGACTGGAGCCGTTTATAATGCGTGTAATACTAATAATA
CCAATACTAATAATAATAATAATACGGGATTTAGTTTGTATAAACGACTG
GAAGAATCCGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCCGGCCACTATATCCTCCATCCACCCCCCCATGTACGAACAT
TTTCTGGAAGAGCCTATTGTGTAATCTTTGAATTCTTTAAAAACGTTTTC
AGGTTGAGGAGGATGATGACCATGTGAAGCGACCAATGAATGCTTTCATG
GTATGGTCACGAACAGAGCGACGAAAACTGGCACTCAAATTCCCAAATAT
GTTAAATTGTGAAATCTCCAAATTATTGGGCGCTGAATGGTCTCGTATGT
CTGACGAGGATAAATCACCTTATGTTCAAGAAAGCAAAAGATTAAGGACA
ATTCACAGTCAAAAATATCCCGATTACTCTTACAAACCAAGACGGAGGAA
ACGAAAAACGCAACAAAGCCAACCGCCCTATCCATCAATTAACTTCCAAA
GTGCATCCGCCAACATCCCACCACCCTACCAATATCCACCTGCAGCAGGA
TTCGCAAAAATCTCATCAGATGCATTTAAAATGTCCAGCTTTGGTGGTGG
TGAAAGTGGCTTTCCAGTACCGCCCCTTAACGATCCAGGAAAAGCACTCA
GCTATCTTAATTCAGCTGCCGCCATTGGATTACCAGATATGAAATCATAC
TATAGTCTCGCACCGCCCAATCCAAATCTCTTTCCGCCCTCCTCGTCAAA
CAGCTATACCTCACTGTCATTGACTGGGAACACACCAACTAACTTATATT
CGTCCTCCAATACTTACATGCCAGCCATGTTTAAGGACGGACCAAGCCAT
TACTGAAAAAACGTCTCATTTGACTCTAAGAATAAGACTAAGTATTTTTA
ATCAAAAAAAAAATTTGAAGCACAGTTTTGGTCAAGATAATCCCTCATGA
AAAATAAGTACAGTATGTCAATCGGTTGTGATAATTACAGTACTTCTTAA
CCAGAAGTTTAAACATCTTACGAAAGGTCAATCGTGTACATAAACCAAAC
AGATTATATTTATTCTCAAGGTCATTGTGAATCAAAATTGATTTGAACCT
GGGATTCTAATCGCAGATTATTGCTAATAAGGATGGCTCTAATTCGTTGT
TTCAAGATATTTATCATTTGCTGAAACCATGTTCTCAATGCATGACCATG
ACTATTAATCTATGATATTATAAAATCAAACGTATTTAAAATATTATTCA
AATTGCACCAAAGCACTGGTTGTCACATGACCTAAAAGCCAATTAGTTAT
GGTGCTTCAAAAGCTTTTATACTGGATTATTGCTGTTGGCACCTTCAAAA
ACAGACAATATCAAGTCAAATTTCAAGCTTGATAAAGGCATGTAAAGTTT
ATATCAGAAAGTAAATGTCAGTATCGGATCTGAGGAGGAGGGCTCAAAAT
TTATATCGGAGAGTCTTAATTTCCTTATAAGGAGTATGGATAAAAGAAAC
ACTCTCCATCGTTGATTTTGAACCGCTTTTAGATCCGCTGCTGAATGTAA
ACAGAGGAAGACTTTTTATACTCGATTTTCATAATATTCATGATGTACTC
TTTTATATACGGAAACATGTGCCATTTTTGGTTAAACTCTAAAGTGGTAA
TTTCACAGCAGATCTTCAACAACACCCATCCCTGAAAAGTTTTAGCTCGG
GGTTTCGGAAACACATCTTCTATATAGAAACTTGGAGAATAGACCTTTAC
ATAAATTACGCCACGAACATAAAAATACTGCCATGGTGATTAACTACCAG
AGGATTTTATTAAAACTACTTTCTATTCATAAAAAAATCATTTAATCTCT
CAAGGGACATAATCATCATGGTACTTGTTTGAATACGAGGCAATTGATGT
TCGTGACGTAATTTAAAAAATTCTTATTAATCTTGTAAAGACTCGATCCT
TTTCAAATGTTTCCGTATAAAAGATTACGTCATGTATTTCATGAATTTTA
GGTCTTTTTCACACCATCAGTTTTTATAAATTCTTTTAAGCTGGACTTTT
TTTGTATATATTTTTTCTCTGCATCCACATATATAAAATAATTCTTTTGT
GTACCTATTGTAAATAAAGAAAGCATTCATTCATATTGTAAATTTTCAAT
AGCTTTAGGTGAAAAAGTTTTTTCGACTGAAAATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070669-exon-scaffold_57-1575043694:362250..362348 | TCONS_00070669-exon-scaffold_57-1575043694:362250..362348 | Clytia hemisphaerica | exon |
| TCONS_00070669-exon-scaffold_57-1575043694:358062..360046 | TCONS_00070669-exon-scaffold_57-1575043694:358062..360046 | Clytia hemisphaerica | exon |
| TCONS_00070669-exon-scaffold_57-1510915933:362250..362348 | TCONS_00070669-exon-scaffold_57-1510915933:362250..362348 | Clytia hemisphaerica | exon |
| TCONS_00070669-exon-scaffold_57-1510915933:358062..360046 | TCONS_00070669-exon-scaffold_57-1510915933:358062..360046 | Clytia hemisphaerica | exon |
| TCONS_00070669-exon-scaffold_57-1491911889:362250..362348 | TCONS_00070669-exon-scaffold_57-1491911889:362250..362348 | Clytia hemisphaerica | exon |
| TCONS_00070669-exon-scaffold_57-1491911889:358062..360046 | TCONS_00070669-exon-scaffold_57-1491911889:358062..360046 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_57 | supercontig | scaffold_57:358062..362348 - |
Blast
BLAST of TCONS_00070669 vs. Swiss-Prot (Human)
Match: SOX3 (Transcription factor SOX-3 OS=Homo sapiens GN=SOX3 PE=1 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 1.260e-26 Identity = 48/78 (61.54%), Postives = 62/78 (79.49%), Query Frame = 1
Query: 109 DDDHVKRPMNAFMVWSRTERRKLALKFPNMLNCEISKLLGAEWSRMSDEDKSPYVQESKRLRTIHSQKYPDYSYKPRR 342
D D VKRPMNAFMVWSR +RRK+AL+ P M N EISK LGA+W ++D +K P++ E+KRLR +H ++YPDY Y+PRR
Sbjct: 135 DQDRVKRPMNAFMVWSRGQRRKMALENPKMHNSEISKRLGADWKLLTDAEKRPFIDEAKRLRAVHMKEYPDYKYRPRR 212
The following BLAST results are available for this feature:
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