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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070666 ID=TCONS_00070666|Name=TCONS_00070666|organism=Clytia hemisphaerica|type=transcript|length=692bp gctatatgttcttatataaattgttcttatataaaactaaagatataaaa aaaaccagaaaaatattctaaaagagTATAGATATAATGGGATGTGGTGG TTCTAAAAGCACAACGGCTGTAATTTCAAATAACCGCCATCCTCGAAACG AAGTGTCACAAACTCAAACAACTTGTATTGCCGACTCTGTTGTCAATAAC AACAATAATCAACCTAGTACCCGGGCCTCAACTCATCAAAAATATCCAGC GACTAGTACTGAGTCCACTGTTGAGAAACCACACCCTGCAGCGGCGACTC GTATTATTAAGAAAGTGAAAATCAAGGATTCGGAggaatttgagtttttt gatattttgtcttACGAAGAGGCCGCCAAACAGCTGCCAGAGACGATTGA AGATATGTGGGCTATCGTGAAGAAGACATCAGAGAAAAATGCCATCAGAG TTGAACCGACAAAGAATAGAAAAGGTTGGAGGACTATCCGTATCTTCGTC TCATCCACCTTTAAAGATTTCCACCACGAACGAGAAGTTCTTGTCAAAGA GGTTTTTCCCGATCTTCGGTTATGGTGTGAACAAAGAAAATTACGGTTGG TGGAATGCGATCTCAGATGGGTAAGTGAGATACTTCATAATATTTGAACT TAACCATTGGTAGAAATTATCGTCGGATAAAAGGGACGAAAA Run BLAST on NCBI protein sequence of TCONS_00070666-protein >TCONS_00070666-protein ID=TCONS_00070666-protein|Name=TCONS_00070666-protein|organism=Clytia hemisphaerica|type=polypeptide|length=186bp
MGCGGSKSTTAVISNNRHPRNEVSQTQTTCIADSVVNNNNNQPSTRASTH QKYPATSTESTVEKPHPAAATRIIKKVKIKDSEEFEFFDILSYEEAAKQL PETIEDMWAIVKKTSEKNAIRVEPTKNRKGWRTIRIFVSSTFKDFHHERE VLVKEVFPDLRLWCEQRKLRLVECDLRWVSEILHNI Run BLAST on NCBI transcript from alignment at scaffold_57:289520..292043- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070666 ID=TCONS_00070666|Name=TCONS_00070666|organism=Clytia hemisphaerica|type=transcript|length=2524bp|location=Sequence derived from alignment at scaffold_57:289520..292043- (Clytia hemisphaerica) GCTATATGTTCTTATATAAATTGTTCTTATATAAAACTAAAGATATAAAA
AAAACCAGAAAAATATTCTAAAAGAGTATAGATATAATGGGATGTGGTGG
TTCTAAAAGCACAACGGCTGTAATTTCAAATAACCGCCATCCTCGAAACG
AAGTGTCACAAACTCAAACAACTTGTATTGCCGACTCTGTTGTCAATAAC
AACAATAATCAACCTAGTACCCGGGCCTCAACTCATCAAAAATATCCAGC
GACTAGTACTGAGTCCACTGTTGAGAAACCACACCCTGCAGCGGCGACTC
GTATTATTAAGAAAGTGAAAATCAAGGATTCGGAGGAATTTGAGTTTTTT
GATATTTTGTCTTACGAAGAGGCCGCCAAACAGGTAAGGTGGTCACAGTA
ACCTTATATCAAATACACCTTTTCGACCGTAGTCGCGCGGTCGGGCGCGT
GCCACTTAATTATTTAATTATCCCCCTAAACTCGATCCAATCCTTTTTTG
ACACATTTTTTTGTGCGAAAAAGGGACTGGGACAGTTTTAGTGGGATAAA
GTGGACAAAAAATTCCCGCGCGGCAATTGGCGGCTACGGTCGAAAAGGCG
TATTGTGATCGTTTTCTGCCCACCACGCTGAAGCTCTAGTCGCTAATGTA
GAAAAGTTCATTCCCAAGGGACCAAAAATTTCTCCGATAAGGTATTACCA
ACGAAGATTGGTCCAAGGAAAAGGGGTTCTTGGGTTTCCTTATAAAAACT
CAATTTGAATATTCTTACTTTATCTTTATAGCTGCCAGAGACGATTGAAG
ATATGTGGGCTATCGTGAAGAAGACATCAGAGAAAAATGCCATCAGAGTT
GAACCGACAAAGAATAGAAAAGGTTGGAGGACTATCCGTATCTTCGTCTC
ATCCACCTTTAAAGATTTCCACCACGAACGAGAAGTTCTTGTCAAAGAGG
TATGCTTTATAGTCTTTCTTTTTTACCGCAAAGTTACTGCCCATAGGCCA
TTTCATAGTCGCAAAGCGTAATGGGTAATCAGGACAACTGCGCGCTAATG
ACGACTTACTATTGGTCAAAAGTTTTGAAATTTTTTGAAGATTTTCGCGT
CTTGCCAACTGGAAGCCGTTGTGGAGGCGTATAATTAGTCCCGATTACCC
ATGATTCATTTCGACTATAAAATGGCCTATGCTGACCTTGTTATATCCAC
CATCTTTGATTAGTGGTATTCTAATAGTAGCACTACAAGAAACCATGACC
AGAAAATAGACGACGAAAGTTTTGATGTTAAAAAATTCTATATTTCGTGT
ACATCTAACACATCTTTCAGGAGAAAATTCACAACTCGATGTGGGTTAAT
TCATAATTCAATGAAATTCTCCGTTCAAAAATATTTTCACCAACATTGTA
GTAATGCTACCGTTCATAAGGTGCCACTTTCAAACATCACCGGTCAAGAA
TTTTTATTTAGCCAATATAGAGAAAGGTATGTACAAGGTATATAAAGCAC
TGTATAGAGCACTTTCTGTTATGTCTAGTCTAACATAAGAACTTAACTAT
TACCACTATTCAAGAATACTATGCTACGCCTTGATCCTAAGTTTATCTGC
CCCCTTCCTCAGCTTATTTTAACAATGTATTATATATTTATAGGCTTAAC
CTTTTTAATTTTCATAACACTTAATAAATAACACAAATAAAGTTCAGTGG
TTACTGCCCTTGTTTACCGAAAAGGGTGTGTCGATGGATTCGTATGATGC
GTAAAATTGCCCGTACATTGGACTAAAATTTTAATTTAAAAAAGTTCTAA
AAACTTTATCCAGAATATGCAAAAGACTAGTCTTTTTTACTGTATACCCA
AATTTTCCCAGAAATATTTGCCTAGTGAAAGACATTTTTCTCCATTCATG
TTTTCCACATCCTTACTTGCGAATATCCCTTCAAAGGGACAAAACATTAC
ACTGGCATTTAATAGTCTTAAAATACACCTATAAATGCTTAACTGCGCGG
TCGGCTTCTGAGAGTACTGGTAACGAATCTACAAGGAGATGACGTCAAAA
TTTGTTGTCGTTCAGAATGTTAAAGGTTTTATTTTTACCTAAGTGGCCTC
GTTTCATATCAAACACATATTTCATATCAGGACAGTGTCTGCCTGTTGTT
ATATTATGCTGATATAAGCAAAAAATGTTTTTCTTTATTTGACCAATCTT
GCTCCACATCCGTGTCAATCCAATGTGAAAAAGCTTGTGAATTAAATTTA
ATGAGTAAGCAAACGATGGCACTCTTTTTTTTAAACAAAACCTTTAATGC
AATGACATTTTGACGTCATTCCTTCCTGGCAAACTCGAACCCAGTCTCAC
CACGCTAAGGTTTATTCCTTATTTTTGTTTTAGGTTTTTCCCGATCTTCG
GTTATGGTGTGAACAAAGAAAATTACGGTTGGTGGAATGCGATCTCAGAT
GGGTAAGTGAGATACTTCATAATATTTGAACTTAACCATTGGTAGAAATT
ATCGTCGGATAAAAGGGACGAAAA Coding sequence (CDS) from alignment at scaffold_57:289520..292043- >TCONS_00070666 ID=TCONS_00070666|Name=TCONS_00070666|organism=Clytia hemisphaerica|type=CDS|length=1683bp|location=Sequence derived from alignment at scaffold_57:289520..292043- (Clytia hemisphaerica) GTTTTTCCCGATCTTCGGTTATGGTGTGAACAAAGAAAATTACGGTTGGT GGAATGCGATCTCAGATGGGTAAGTGAGATACTTCATAATATTTGACTGC CAGAGACGATTGAAGATATGTGGGCTATCGTGAAGAAGACATCAGAGAAA AATGCCATCAGAGTTGAACCGACAAAGAATAGAAAAGGTTGGAGGACTAT CCGTATCTTCGTCTCATCCACCTTTAAAGATTTCCACCACGAACGAGAAG TTCTTGTCAAAGAGATGGGATGTGGTGGTTCTAAAAGCACAACGGCTGTA ATTTCAAATAACCGCCATCCTCGAAACGAAGTGTCACAAACTCAAACAAC TTGTATTGCCGACTCTGTTGTCAATAACAACAATAATCAACCTAGTACCC GGGCCTCAACTCATCAAAAATATCCAGCGACTAGTACTGAGTCCACTGTT GAGAAACCACACCCTGCAGCGGCGACTCGTATTATTAAGAAAGTGAAAAT CAAGGATTCGGAGGAATTTGAGTTTTTTGATATTTTGTCTTACGAAGAGG CCGCCAAACAGGTTTTTCCCGATCTTCGGTTATGGTGTGAACAAAGAAAA TTACGGTTGGTGGAATGCGATCTCAGATGGGTAAGTGAGATACTTCATAA TATTTGACTGCCAGAGACGATTGAAGATATGTGGGCTATCGTGAAGAAGA CATCAGAGAAAAATGCCATCAGAGTTGAACCGACAAAGAATAGAAAAGGT TGGAGGACTATCCGTATCTTCGTCTCATCCACCTTTAAAGATTTCCACCA CGAACGAGAAGTTCTTGTCAAAGAGATGGGATGTGGTGGTTCTAAAAGCA CAACGGCTGTAATTTCAAATAACCGCCATCCTCGAAACGAAGTGTCACAA ACTCAAACAACTTGTATTGCCGACTCTGTTGTCAATAACAACAATAATCA ACCTAGTACCCGGGCCTCAACTCATCAAAAATATCCAGCGACTAGTACTG AGTCCACTGTTGAGAAACCACACCCTGCAGCGGCGACTCGTATTATTAAG AAAGTGAAAATCAAGGATTCGGAGGAATTTGAGTTTTTTGATATTTTGTC TTACGAAGAGGCCGCCAAACAGGTTTTTCCCGATCTTCGGTTATGGTGTG AACAAAGAAAATTACGGTTGGTGGAATGCGATCTCAGATGGGTAAGTGAG ATACTTCATAATATTTGACTGCCAGAGACGATTGAAGATATGTGGGCTAT CGTGAAGAAGACATCAGAGAAAAATGCCATCAGAGTTGAACCGACAAAGA ATAGAAAAGGTTGGAGGACTATCCGTATCTTCGTCTCATCCACCTTTAAA GATTTCCACCACGAACGAGAAGTTCTTGTCAAAGAGATGGGATGTGGTGG TTCTAAAAGCACAACGGCTGTAATTTCAAATAACCGCCATCCTCGAAACG AAGTGTCACAAACTCAAACAACTTGTATTGCCGACTCTGTTGTCAATAAC AACAATAATCAACCTAGTACCCGGGCCTCAACTCATCAAAAATATCCAGC GACTAGTACTGAGTCCACTGTTGAGAAACCACACCCTGCAGCGGCGACTC GTATTATTAAGAAAGTGAAAATCAAGGATTCGGAGGAATTTGAGTTTTTT GATATTTTGTCTTACGAAGAGGCCGCCAAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00070666-exon-scaffold_57-1575043694:291661..292043 | TCONS_00070666-exon-scaffold_57-1575043694:291661..292043 | Clytia hemisphaerica | exon |
TCONS_00070666-exon-scaffold_57-1575043694:291095..291262 | TCONS_00070666-exon-scaffold_57-1575043694:291095..291262 | Clytia hemisphaerica | exon |
TCONS_00070666-exon-scaffold_57-1575043694:289520..289660 | TCONS_00070666-exon-scaffold_57-1575043694:289520..289660 | Clytia hemisphaerica | exon |
TCONS_00070666-exon-scaffold_57-1510915933:291661..292043 | TCONS_00070666-exon-scaffold_57-1510915933:291661..292043 | Clytia hemisphaerica | exon |
TCONS_00070666-exon-scaffold_57-1510915933:291095..291262 | TCONS_00070666-exon-scaffold_57-1510915933:291095..291262 | Clytia hemisphaerica | exon |
TCONS_00070666-exon-scaffold_57-1510915933:289520..289660 | TCONS_00070666-exon-scaffold_57-1510915933:289520..289660 | Clytia hemisphaerica | exon |
TCONS_00070666-exon-scaffold_57-1491911889:291661..292043 | TCONS_00070666-exon-scaffold_57-1491911889:291661..292043 | Clytia hemisphaerica | exon |
TCONS_00070666-exon-scaffold_57-1491911889:291095..291262 | TCONS_00070666-exon-scaffold_57-1491911889:291095..291262 | Clytia hemisphaerica | exon |
TCONS_00070666-exon-scaffold_57-1491911889:289520..289660 | TCONS_00070666-exon-scaffold_57-1491911889:289520..289660 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_57 | supercontig | scaffold_57:289520..292043 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR025139 | DUF4062 |
Blast
The following BLAST results are available for this feature:
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