TCONS_00070666 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070666
Unique NameTCONS_00070666
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length692

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070666 ID=TCONS_00070666|Name=TCONS_00070666|organism=Clytia hemisphaerica|type=transcript|length=692bp
gctatatgttcttatataaattgttcttatataaaactaaagatataaaa
aaaaccagaaaaatattctaaaagagTATAGATATAATGGGATGTGGTGG
TTCTAAAAGCACAACGGCTGTAATTTCAAATAACCGCCATCCTCGAAACG
AAGTGTCACAAACTCAAACAACTTGTATTGCCGACTCTGTTGTCAATAAC
AACAATAATCAACCTAGTACCCGGGCCTCAACTCATCAAAAATATCCAGC
GACTAGTACTGAGTCCACTGTTGAGAAACCACACCCTGCAGCGGCGACTC
GTATTATTAAGAAAGTGAAAATCAAGGATTCGGAggaatttgagtttttt
gatattttgtcttACGAAGAGGCCGCCAAACAGCTGCCAGAGACGATTGA
AGATATGTGGGCTATCGTGAAGAAGACATCAGAGAAAAATGCCATCAGAG
TTGAACCGACAAAGAATAGAAAAGGTTGGAGGACTATCCGTATCTTCGTC
TCATCCACCTTTAAAGATTTCCACCACGAACGAGAAGTTCTTGTCAAAGA
GGTTTTTCCCGATCTTCGGTTATGGTGTGAACAAAGAAAATTACGGTTGG
TGGAATGCGATCTCAGATGGGTAAGTGAGATACTTCATAATATTTGAACT
TAACCATTGGTAGAAATTATCGTCGGATAAAAGGGACGAAAA
Run BLAST on NCBI

protein sequence of TCONS_00070666-protein

>TCONS_00070666-protein ID=TCONS_00070666-protein|Name=TCONS_00070666-protein|organism=Clytia hemisphaerica|type=polypeptide|length=186bp
MGCGGSKSTTAVISNNRHPRNEVSQTQTTCIADSVVNNNNNQPSTRASTH
QKYPATSTESTVEKPHPAAATRIIKKVKIKDSEEFEFFDILSYEEAAKQL
PETIEDMWAIVKKTSEKNAIRVEPTKNRKGWRTIRIFVSSTFKDFHHERE
VLVKEVFPDLRLWCEQRKLRLVECDLRWVSEILHNI
Run BLAST on NCBI

transcript from alignment at scaffold_57:289520..292043-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070666 ID=TCONS_00070666|Name=TCONS_00070666|organism=Clytia hemisphaerica|type=transcript|length=2524bp|location=Sequence derived from alignment at scaffold_57:289520..292043- (Clytia hemisphaerica)
GCTATATGTTCTTATATAAATTGTTCTTATATAAAACTAAAGATATAAAA
AAAACCAGAAAAATATTCTAAAAGAGTATAGATATAATGGGATGTGGTGG
TTCTAAAAGCACAACGGCTGTAATTTCAAATAACCGCCATCCTCGAAACG
AAGTGTCACAAACTCAAACAACTTGTATTGCCGACTCTGTTGTCAATAAC
AACAATAATCAACCTAGTACCCGGGCCTCAACTCATCAAAAATATCCAGC
GACTAGTACTGAGTCCACTGTTGAGAAACCACACCCTGCAGCGGCGACTC
GTATTATTAAGAAAGTGAAAATCAAGGATTCGGAGGAATTTGAGTTTTTT
GATATTTTGTCTTACGAAGAGGCCGCCAAACAGGTAAGGTGGTCACAGTA
ACCTTATATCAAATACACCTTTTCGACCGTAGTCGCGCGGTCGGGCGCGT
GCCACTTAATTATTTAATTATCCCCCTAAACTCGATCCAATCCTTTTTTG
ACACATTTTTTTGTGCGAAAAAGGGACTGGGACAGTTTTAGTGGGATAAA
GTGGACAAAAAATTCCCGCGCGGCAATTGGCGGCTACGGTCGAAAAGGCG
TATTGTGATCGTTTTCTGCCCACCACGCTGAAGCTCTAGTCGCTAATGTA
GAAAAGTTCATTCCCAAGGGACCAAAAATTTCTCCGATAAGGTATTACCA
ACGAAGATTGGTCCAAGGAAAAGGGGTTCTTGGGTTTCCTTATAAAAACT
CAATTTGAATATTCTTACTTTATCTTTATAGCTGCCAGAGACGATTGAAG
ATATGTGGGCTATCGTGAAGAAGACATCAGAGAAAAATGCCATCAGAGTT
GAACCGACAAAGAATAGAAAAGGTTGGAGGACTATCCGTATCTTCGTCTC
ATCCACCTTTAAAGATTTCCACCACGAACGAGAAGTTCTTGTCAAAGAGG
TATGCTTTATAGTCTTTCTTTTTTACCGCAAAGTTACTGCCCATAGGCCA
TTTCATAGTCGCAAAGCGTAATGGGTAATCAGGACAACTGCGCGCTAATG
ACGACTTACTATTGGTCAAAAGTTTTGAAATTTTTTGAAGATTTTCGCGT
CTTGCCAACTGGAAGCCGTTGTGGAGGCGTATAATTAGTCCCGATTACCC
ATGATTCATTTCGACTATAAAATGGCCTATGCTGACCTTGTTATATCCAC
CATCTTTGATTAGTGGTATTCTAATAGTAGCACTACAAGAAACCATGACC
AGAAAATAGACGACGAAAGTTTTGATGTTAAAAAATTCTATATTTCGTGT
ACATCTAACACATCTTTCAGGAGAAAATTCACAACTCGATGTGGGTTAAT
TCATAATTCAATGAAATTCTCCGTTCAAAAATATTTTCACCAACATTGTA
GTAATGCTACCGTTCATAAGGTGCCACTTTCAAACATCACCGGTCAAGAA
TTTTTATTTAGCCAATATAGAGAAAGGTATGTACAAGGTATATAAAGCAC
TGTATAGAGCACTTTCTGTTATGTCTAGTCTAACATAAGAACTTAACTAT
TACCACTATTCAAGAATACTATGCTACGCCTTGATCCTAAGTTTATCTGC
CCCCTTCCTCAGCTTATTTTAACAATGTATTATATATTTATAGGCTTAAC
CTTTTTAATTTTCATAACACTTAATAAATAACACAAATAAAGTTCAGTGG
TTACTGCCCTTGTTTACCGAAAAGGGTGTGTCGATGGATTCGTATGATGC
GTAAAATTGCCCGTACATTGGACTAAAATTTTAATTTAAAAAAGTTCTAA
AAACTTTATCCAGAATATGCAAAAGACTAGTCTTTTTTACTGTATACCCA
AATTTTCCCAGAAATATTTGCCTAGTGAAAGACATTTTTCTCCATTCATG
TTTTCCACATCCTTACTTGCGAATATCCCTTCAAAGGGACAAAACATTAC
ACTGGCATTTAATAGTCTTAAAATACACCTATAAATGCTTAACTGCGCGG
TCGGCTTCTGAGAGTACTGGTAACGAATCTACAAGGAGATGACGTCAAAA
TTTGTTGTCGTTCAGAATGTTAAAGGTTTTATTTTTACCTAAGTGGCCTC
GTTTCATATCAAACACATATTTCATATCAGGACAGTGTCTGCCTGTTGTT
ATATTATGCTGATATAAGCAAAAAATGTTTTTCTTTATTTGACCAATCTT
GCTCCACATCCGTGTCAATCCAATGTGAAAAAGCTTGTGAATTAAATTTA
ATGAGTAAGCAAACGATGGCACTCTTTTTTTTAAACAAAACCTTTAATGC
AATGACATTTTGACGTCATTCCTTCCTGGCAAACTCGAACCCAGTCTCAC
CACGCTAAGGTTTATTCCTTATTTTTGTTTTAGGTTTTTCCCGATCTTCG
GTTATGGTGTGAACAAAGAAAATTACGGTTGGTGGAATGCGATCTCAGAT
GGGTAAGTGAGATACTTCATAATATTTGAACTTAACCATTGGTAGAAATT
ATCGTCGGATAAAAGGGACGAAAA

Coding sequence (CDS) from alignment at scaffold_57:289520..292043-

>TCONS_00070666 ID=TCONS_00070666|Name=TCONS_00070666|organism=Clytia hemisphaerica|type=CDS|length=1683bp|location=Sequence derived from alignment at scaffold_57:289520..292043- (Clytia hemisphaerica)
GTTTTTCCCGATCTTCGGTTATGGTGTGAACAAAGAAAATTACGGTTGGT
GGAATGCGATCTCAGATGGGTAAGTGAGATACTTCATAATATTTGACTGC
CAGAGACGATTGAAGATATGTGGGCTATCGTGAAGAAGACATCAGAGAAA
AATGCCATCAGAGTTGAACCGACAAAGAATAGAAAAGGTTGGAGGACTAT
CCGTATCTTCGTCTCATCCACCTTTAAAGATTTCCACCACGAACGAGAAG
TTCTTGTCAAAGAGATGGGATGTGGTGGTTCTAAAAGCACAACGGCTGTA
ATTTCAAATAACCGCCATCCTCGAAACGAAGTGTCACAAACTCAAACAAC
TTGTATTGCCGACTCTGTTGTCAATAACAACAATAATCAACCTAGTACCC
GGGCCTCAACTCATCAAAAATATCCAGCGACTAGTACTGAGTCCACTGTT
GAGAAACCACACCCTGCAGCGGCGACTCGTATTATTAAGAAAGTGAAAAT
CAAGGATTCGGAGGAATTTGAGTTTTTTGATATTTTGTCTTACGAAGAGG
CCGCCAAACAGGTTTTTCCCGATCTTCGGTTATGGTGTGAACAAAGAAAA
TTACGGTTGGTGGAATGCGATCTCAGATGGGTAAGTGAGATACTTCATAA
TATTTGACTGCCAGAGACGATTGAAGATATGTGGGCTATCGTGAAGAAGA
CATCAGAGAAAAATGCCATCAGAGTTGAACCGACAAAGAATAGAAAAGGT
TGGAGGACTATCCGTATCTTCGTCTCATCCACCTTTAAAGATTTCCACCA
CGAACGAGAAGTTCTTGTCAAAGAGATGGGATGTGGTGGTTCTAAAAGCA
CAACGGCTGTAATTTCAAATAACCGCCATCCTCGAAACGAAGTGTCACAA
ACTCAAACAACTTGTATTGCCGACTCTGTTGTCAATAACAACAATAATCA
ACCTAGTACCCGGGCCTCAACTCATCAAAAATATCCAGCGACTAGTACTG
AGTCCACTGTTGAGAAACCACACCCTGCAGCGGCGACTCGTATTATTAAG
AAAGTGAAAATCAAGGATTCGGAGGAATTTGAGTTTTTTGATATTTTGTC
TTACGAAGAGGCCGCCAAACAGGTTTTTCCCGATCTTCGGTTATGGTGTG
AACAAAGAAAATTACGGTTGGTGGAATGCGATCTCAGATGGGTAAGTGAG
ATACTTCATAATATTTGACTGCCAGAGACGATTGAAGATATGTGGGCTAT
CGTGAAGAAGACATCAGAGAAAAATGCCATCAGAGTTGAACCGACAAAGA
ATAGAAAAGGTTGGAGGACTATCCGTATCTTCGTCTCATCCACCTTTAAA
GATTTCCACCACGAACGAGAAGTTCTTGTCAAAGAGATGGGATGTGGTGG
TTCTAAAAGCACAACGGCTGTAATTTCAAATAACCGCCATCCTCGAAACG
AAGTGTCACAAACTCAAACAACTTGTATTGCCGACTCTGTTGTCAATAAC
AACAATAATCAACCTAGTACCCGGGCCTCAACTCATCAAAAATATCCAGC
GACTAGTACTGAGTCCACTGTTGAGAAACCACACCCTGCAGCGGCGACTC
GTATTATTAAGAAAGTGAAAATCAAGGATTCGGAGGAATTTGAGTTTTTT
GATATTTTGTCTTACGAAGAGGCCGCCAAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043966XLOC_043966Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070666-proteinTCONS_00070666-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070666-exon-scaffold_57-1575043694:291661..292043TCONS_00070666-exon-scaffold_57-1575043694:291661..292043Clytia hemisphaericaexon
TCONS_00070666-exon-scaffold_57-1575043694:291095..291262TCONS_00070666-exon-scaffold_57-1575043694:291095..291262Clytia hemisphaericaexon
TCONS_00070666-exon-scaffold_57-1575043694:289520..289660TCONS_00070666-exon-scaffold_57-1575043694:289520..289660Clytia hemisphaericaexon
TCONS_00070666-exon-scaffold_57-1510915933:291661..292043TCONS_00070666-exon-scaffold_57-1510915933:291661..292043Clytia hemisphaericaexon
TCONS_00070666-exon-scaffold_57-1510915933:291095..291262TCONS_00070666-exon-scaffold_57-1510915933:291095..291262Clytia hemisphaericaexon
TCONS_00070666-exon-scaffold_57-1510915933:289520..289660TCONS_00070666-exon-scaffold_57-1510915933:289520..289660Clytia hemisphaericaexon
TCONS_00070666-exon-scaffold_57-1491911889:291661..292043TCONS_00070666-exon-scaffold_57-1491911889:291661..292043Clytia hemisphaericaexon
TCONS_00070666-exon-scaffold_57-1491911889:291095..291262TCONS_00070666-exon-scaffold_57-1491911889:291095..291262Clytia hemisphaericaexon
TCONS_00070666-exon-scaffold_57-1491911889:289520..289660TCONS_00070666-exon-scaffold_57-1491911889:289520..289660Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:289520..292043 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.954887	0.931166	0.540586	0.935709	60.5723	46.5344	18.5565	21.5718	9.31555	16.829	8.8557	10.6399	5.34921	5.80887	2.35656	3.51367	3.50144	3.95623	8.39382	8.37499	6.35615	5.04016	2.10549	3.36899	11.1986	9.99445	10.8272	10.104	1.50825	1.37054
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR025139DUF4062
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070666 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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