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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070661 ID=TCONS_00070661|Name=TCONS_00070661|organism=Clytia hemisphaerica|type=transcript|length=1069bpRun BLAST on NCBI transcript from alignment at scaffold_57:118248..120269- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070661 ID=TCONS_00070661|Name=TCONS_00070661|organism=Clytia hemisphaerica|type=transcript|length=2022bp|location=Sequence derived from alignment at scaffold_57:118248..120269- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070661 vs. Swiss-Prot (Human)
Match: ZN573 (Zinc finger protein 573 OS=Homo sapiens GN=ZNF573 PE=2 SV=4) HSP 1 Score: 150.984 bits (380), Expect = 2.864e-40 Identity = 78/203 (38.42%), Postives = 121/203 (59.61%), Query Frame = -3
Query: 3 RSFECTECGKCYKARWSLKIHQRIHTIQSDNFQCKECGKCYKARRSLKIHQRIHTIQSDNFQCKECGKSFAQLDELQLHEIVHKDTTNKFECEECGKSFTRKGNLKQHLGTHTDHRPFYCTVCGKAFKHRCNLVEHSRIHIGFKPFRCKECGKSYRTATHLKSHSRTHSN**KYSYKFCIVIQNNFLNFSYNLIIHFHSIIFQ 611
+ +ECTECGK +++ + L +HQR HT + ++C++CGK + + H+RIHT ++C+ECG++F+Q L++H+ VH ++C+ECGK+F+R+ NL +H HTD +P+ C CGKAF+ L H R+H G KP+ CKECGK Y TA++ H R H Y K C + N + + IH +F+
Sbjct: 188 KPYECTECGKNFRSGYQLTVHQRFHTGE-KTYECRQCGKAFIYASHIVQHERIHT-GGKPYECQECGRAFSQGGHLRIHQRVHTGE-KPYKCKECGKTFSRRSNLVEHGQFHTDEKPYICEKCGKAFRRGHQLTVHQRVHTGKKPYECKECGKGYTTASYFLLHQRIHKGGKPYECKECKKTFTLYRNLTRHQNIHTGEKLFE 387 HSP 2 Score: 144.436 bits (363), Expect = 5.359e-38 Identity = 75/170 (44.12%), Postives = 104/170 (61.18%), Query Frame = -3
Query: 102 RSFECTECGKCYKARWSLKIHQRIHTIQSDNFQCKECGKCYKARRSLKIHQRIHTIQSDNFQCKECGKSFAQLDELQLHEIVHKDTTNKFECEECGKSFTRKGNLKQHLGTHTDHRPFYCTVCGKAFKHRCNLVEHSRIHIGFKPFRCKECGKSYRTATHLKSHSRTHSN 611
+ ++C ECGK + L HQ+IHT ++CK C K + R+L +HQ IHT + F+CKECGK+F + L H+ +H D +EC+ECGK+F G L QH HT +P+ C CGKAF NLV+H RIH G KP+ CK+CGK++R + LK+H R H +
Sbjct: 496 KPYKCKECGKTFSLHGYLNQHQKIHTGMKP-YECKVCRKTFTFYRNLTLHQSIHTDEKP-FECKECGKTFRRSSHLTAHQSIHADK-KPYECKECGKAFKMYGYLTQHQKIHTGGKPYECKECGKAFSRASNLVQHERIHTGEKPYVCKQCGKTFRYGSALKAHQRIHRS 662 HSP 3 Score: 137.502 bits (345), Expect = 1.434e-35 Identity = 78/190 (41.05%), Postives = 106/190 (55.79%), Query Frame = -3
Query: 102 NFIVQEETDRRYNVSKVKKSRSFECTECGKCYKARWSLKIHQRIHTIQSDNFQCKECGKCYKARRSLKIHQRIHTIQSDNFQCKECGKSFAQLDELQLHEIVHKDTTNKFECEECGKSFTRKGNLKQHLGTHTDHRPFYCTVCGKAFKHRCNLVEHSRIHIGFKPFRCKECGKSYRTATHLKSHSRTHSN 671
F + R N+ KK FEC ECGK Y +L H++ HT + ++CKECGK + L HQ+IHT ++CK C K+F L LH+ +H D FEC+ECGK+F R +L H H D +P+ C CGKAFK L +H +IH G KP+ CKECGK++ A++L H R H+
Sbjct: 450 TFTLYRNLTRHQNIHTGKKL--FECQECGKAYSTGSNLIQHRKTHTGEKP-YKCKECGKTFSLHGYLNQHQKIHTGMKP-YECKVCRKTFTFYRNLTLHQSIHTDE-KPFECKECGKTFRRSSHLTAHQSIHADKKPYECKECGKAFKMYGYLTQHQKIHTGGKPYECKECGKAFSRASNLVQHERIHTG 634 HSP 4 Score: 129.798 bits (325), Expect = 8.243e-33 Identity = 76/199 (38.19%), Postives = 109/199 (54.77%), Query Frame = -3
Query: 24 KKSRSFECTECGKCYKARWSLKIHQRIHTIQSDNFQCKECGKCYKARRSLKIHQRIHTIQSDNFQCKECGKSFAQLDELQLHEIVHKDTTNKFECEECGKSFTRKGNLKQHLGTHTDHRPFYCTVCGKAFKHRCNLVEHSRIHIGFKPFRCKECGKSYRTATHLKSHSRTHSN**KYSYKFCIVIQNNFLNFSYNLIIH 620
K + +EC EC K + +L HQ IHT + F+CK+CGK Y L HQ+ HT + ++CKECGK+F+ L+ H+ +H + FEC+EC K+FT NL +H HT + F C CGKA+ NL++H + H G KP++CKECGK++ +L H + H+ Y K C F NL +H
Sbjct: 353 KGGKPYECKECKKTFTLYRNLTRHQNIHTGE-KLFECKQCGKTYTTGSKLFQHQKTHTGEKP-YECKECGKAFSLYGYLKQHQKIHTGMKH-FECKECKKTFTLYRNLTRHQNIHTGKKLFECQECGKAYSTGSNLIQHRKTHTGEKPYKCKECGKTFSLHGYLNQHQKIHTGMKPYECKVC----RKTFTFYRNLTLH 544 HSP 5 Score: 122.865 bits (307), Expect = 1.828e-30 Identity = 77/232 (33.19%), Postives = 114/232 (49.14%), Query Frame = -3
Query: 3 SRSFECTECGKCYKARWSLKIHQRIHTIQSDNFQCKECGK-------------------------CYKARR---SLKIHQRIHTIQSDNFQCKECGKSFAQLDELQLHEIVHKDTTNKFECEECGKSFTRKGNLKQHLGTHTDHRPFYCTVCGKAFKHRCNLVEHSRIHIGFKPFRCKECGKSYRTATHLKSHSRTHSN**KYSYKFCIVIQNNFLNFSYNLIIHFHSIIFQ 614
+ +EC ECG+ + L+IHQR+HT + ++CKECGK C KA R L +HQR+HT + ++CKECGK + LH+ +HK +EC+EC K+FT NL +H HT + F C CGK + L +H + H G KP+ CKECGK++ +LK H + H+ + K C + N + + IH +F+
Sbjct: 243 GKPYECQECGRAFSQGGHLRIHQRVHTGEKP-YKCKECGKTFSRRSNLVEHGQFHTDEKPYICEKCGKAFRRGHQLTVHQRVHTGKKP-YECKECGKGYTTASYFLLHQRIHKGG-KPYECKECKKTFTLYRNLTRHQNIHTGEKLFECKQCGKTYTTGSKLFQHQKTHTGEKPYECKECGKAFSLYGYLKQHQKIHTGMKHFECKECKKTFTLYRNLTRHQNIHTGKKLFE 471 HSP 6 Score: 105.916 bits (263), Expect = 7.615e-25 Identity = 58/144 (40.28%), Postives = 80/144 (55.56%), Query Frame = -3
Query: 180 RSFECTECGKCYKARWSLKIHQRIHTIQSDNFQCKECGKCYKARRSLKIHQRIHTIQSDNFQCKECGKSFAQLDELQLHEIVHKDTTNKFECEECGKSFTRKGNLKQHLGTHTDHRPFYCTVCGKAFKHRCNLVEHSRIHIGFK 611
+ +EC C K + +L +HQ IHT + F+CKECGK ++ L HQ IH ++CKECGK+F L H+ +H +EC+ECGK+F+R NL QH HT +P+ C CGK F++ L H RIH K
Sbjct: 524 KPYECKVCRKTFTFYRNLTLHQSIHTDEKP-FECKECGKTFRRSSHLTAHQSIHA-DKKPYECKECGKAFKMYGYLTQHQKIHTGG-KPYECKECGKAFSRASNLVQHERIHTGEKPYVCKQCGKTFRYGSALKAHQRIHRSIK 664 HSP 7 Score: 80.8777 bits (198), Expect = 1.397e-16 Identity = 42/110 (38.18%), Postives = 61/110 (55.45%), Query Frame = -3
Query: 102 FQCKECGKSFAQLDELQLHEIVHKDTTNKFECEECGKSFTRKGNLKQHLGTHTDHRPFYCTVCGKAFKHRCNLVEHSRIHIGFKPFRCKECGKSYRTATHLKSHSRTHSN 431
++CK+C K F+ +L LH H +EC+ECGK+F L H HT +P+ CT CGK F+ L H R H G K + C++CGK++ A+H+ H R H+
Sbjct: 134 YECKKCQKKFSSGYQLILHHRFH-VIERPYECKECGKNFRSGYQLTLHQRFHTGEKPYECTECGKNFRSGYQLTVHQRFHTGEKTYECRQCGKAFIYASHIVQHERIHTG 242 The following BLAST results are available for this feature:
BLAST of TCONS_00070661 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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