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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070654 ID=TCONS_00070654|Name=TCONS_00070654|organism=Clytia hemisphaerica|type=transcript|length=2700bpRun BLAST on NCBI transcript from alignment at scaffold_57:61515..64912- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070654 ID=TCONS_00070654|Name=TCONS_00070654|organism=Clytia hemisphaerica|type=transcript|length=3398bp|location=Sequence derived from alignment at scaffold_57:61515..64912- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070654 vs. Swiss-Prot (Human)
Match: ZFP1 (Zinc finger protein 1 homolog OS=Homo sapiens GN=ZFP1 PE=1 SV=2) HSP 1 Score: 155.606 bits (392), Expect = 1.908e-40 Identity = 84/221 (38.01%), Postives = 127/221 (57.47%), Query Frame = -2
Query: 663 VGLKPFQCNVCGKSFSRRAGLNSHKQIHDEERKFKCTECGKTFGAKNRLQAHIDIVHKDLIPFQCHECGRAYSAKGDLTRHIDVVHKGAKPYECDWCDERFGRKWELYKHVKVKKHEGXXXXXXXXXXXXXXXXPRDLRPHKCDECDRSFAHRHRLLAHVQRNHRGLEPFKCHECGKSYSQKNDLKRHIEGVHQGIIPYQCSECGAQFARKREFDKHQKSH 1325
G KP++CNVC K+FS +A L H++IH E+ F+C ECGK F ++ L H H + P++C ECG+ ++ K +LT H +H G +PYEC+ C + F +K L H K+ H G + ++C EC +SF +L+ H+ R H G +P++C ECGK++SQ++ L+ H+ +H G PY+CSECG F+RK HQ+ H
Sbjct: 207 TGEKPYECNVCKKTFSHKANLIKHQRIHTGEKPFECPECGKAFTHQSNLIVH-QRAHMEKKPYECSECGKTFAQKFELTTH-QRIHTGERPYECNECAKTFFKKSNLIIHQKI--HTGE-------------------KRYECSECGKSFIQNSQLIIHM-RTHTGEKPYECTECGKTFSQRSTLRLHLR-IHTGEKPYECSECGKAFSRKSRLSVHQRVH 402 HSP 2 Score: 103.219 bits (256), Expect = 3.557e-23 Identity = 72/213 (33.80%), Postives = 111/213 (52.11%), Query Frame = -3
Query: 1775 FVFKPYV---ERKKGGKGKPECDICGKTFWDSHKVRKHKNAVHLGIKPFKCNVCGKAFADNDLLKGHKQTHQKDKRHKCNECGKSFVARIRLQSHIDIVHKDLIPFQCQECGRAYSTKYDLNRXXXXXXXXXXXHECEECGERFGTKWEINKHIKNHQEKRPA-------THSQSSVLKDSSTSNSTTK-FDCNVCGAYFVRKIELDKHRRSH 2380
F FK + +R G+ EC++C KTF + KH+ +H G KPF+C CGKAF L H++ H + K ++C+ECGK+F + L +H I H P++C EC + + K +L +H G K +EC ECG+ F ++ H++ H ++P T SQ S L+ ++ K ++C+ CG F RK L H+R H
Sbjct: 193 FSFKSLLISHKRIHTGEKPYECNVCKKTFSHKANLIKHQR-IHTGEKPFECPECGKAFTHQSNLIVHQRAHMEKKPYECSECGKTFAQKFELTTHQRI-HTGERPYECNECAKTFFKKSNL-IIHQKIHTGEKRYECSECGKSFIQNSQLIIHMRTHTGEKPYECTECGKTFSQRSTLRLHLRIHTGEKPYECSECGKAFSRKSRLSVHQRVH 402 HSP 3 Score: 91.2781 bits (225), Expect = 2.759e-19 Identity = 62/206 (30.10%), Postives = 100/206 (48.54%), Query Frame = -3
Query: 1766 ERKKGGKGKPECDICGKTFWDSHKVRKHKNAVHLGIKPFKCNVCGKAFADNDLLKGHKQTHQKDKRHKCNECGKSFVARIRLQSHIDIVHKDLIPFQCQECGRAYSTKYDLNRXXXXXXXXXXXHECEECGERFGTKWEINKHIKNHQEKRP--------ATHSQSSVLKDSSTSNSTTKFDCNVCGAYFVRKIELDKHRRSHEEE 2359
E+ G E + GK + KH+ +L ++PF C C KAF+ LL HK+ H +K ++CN C K+F + L H I H PF+C ECG+A++ + +L H K +EC ECG+ F K+E+ H + H +RP +S+++ +++C+ CG F++ +L H R+H E
Sbjct: 147 EKTHSGVEYSEYNKSGKALSHKAAIFKHQKIKNL-VQPFICTYCDKAFSFKSLLISHKRIHTGEKPYECNVCKKTFSHKANLIKHQRI-HTGEKPFECPECGKAFTHQSNL-IVHQRAHMEKKPYECSECGKTFAQKFELTTHQRIHTGERPYECNECAKTFFKKSNLIIHQKIHTGEKRYECSECGKSFIQNSQLIIHMRTHTGE 349 HSP 4 Score: 90.1225 bits (222), Expect = 5.997e-19 Identity = 54/145 (37.24%), Postives = 83/145 (57.24%), Query Frame = -3
Query: 1904 KP-ECDICGKTFWDSHKVRKHKNAVHLGIKPFKCNVCGKAFADNDLLKGHKQTHQKDKRHKCNECGKSFVARIRLQSHIDIVHKDLIPFQCQECGRAYSTKYDLNRXXXXXXXXXXXHECEECGERFGTKWEINKHIKNHQEKRP 2335
KP EC CGKTF ++ H+ +H G +P++CN C K F L H++ H +KR++C+ECGKSF+ +L H+ H P++C ECG+ +S + L R +H G K +EC ECG+ F K ++ H + H ++P
Sbjct: 266 KPYECSECGKTFAQKFELTTHQR-IHTGERPYECNECAKTFFKKSNLIIHQKIHTGEKRYECSECGKSFIQNSQLIIHMR-THTGEKPYECTECGKTFSQRSTL-RLHLRIHTGEKPYECSECGKAFSRKSRLSVHQRVHIGEKP 407 The following BLAST results are available for this feature:
BLAST of TCONS_00070654 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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