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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070644 ID=TCONS_00070644|Name=TCONS_00070644|organism=Clytia hemisphaerica|type=transcript|length=2999bpRun BLAST on NCBI protein sequence of TCONS_00070644-protein >TCONS_00070644-protein ID=TCONS_00070644-protein|Name=TCONS_00070644-protein|organism=Clytia hemisphaerica|type=polypeptide|length=491bp MNNHELKIEKTSILLETTDVSAPIKMTFEIKSGQKVIGNCQVLMENFATTRun BLAST on NCBI transcript from alignment at scaffold_57:609831..613880+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070644 ID=TCONS_00070644|Name=TCONS_00070644|organism=Clytia hemisphaerica|type=transcript|length=4050bp|location=Sequence derived from alignment at scaffold_57:609831..613880+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_57:609831..613880+ >TCONS_00070644 ID=TCONS_00070644|Name=TCONS_00070644|organism=Clytia hemisphaerica|type=CDS|length=1476bp|location=Sequence derived from alignment at scaffold_57:609831..613880+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070644 vs. Swiss-Prot (Human)
Match: ZN510 (Zinc finger protein 510 OS=Homo sapiens GN=ZNF510 PE=2 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 1.031e-41 Identity = 94/228 (41.23%), Postives = 131/228 (57.46%), Query Frame = 2
Query: 2051 LKKHQCNDCGLLFYKKSRLESHCNSVHKGLKLFECHECGKSFSRKDYLKIHQNKHEGNTPHKCKLCENSYLYRNQLIQHVNSAHKGIKSYQCEECGKSYYYSNDLKRHHDKIHKGLSPHTCDLCAKSFLRKDHLENHKNAVHLKIKSHNCEVCGKSYTRREHLNRHQKMH---HYFNCNECGKSFARENX---HQKIH---HYFNCNECGKSFARENVLAIHLVTHKG 2707
+K ++CN+CG F +K L H H G K FEC ECGK+FS+K +L HQ H P+KC C +++ ++ L H H G K Y+C ECGK++ + L+ HH +IH G C+ C K+F +K +L H+ H K++ C C KS+ R++HL +HQK H F CNECGK+FAR + HQ+IH F CNECGK F R+ +L+ H H G
Sbjct: 401 MKPYKCNECGKSFCQKGHLIQH-QRTHTGEKPFECSECGKTFSQKSHLSTHQRIHTAEKPYKCNECGKTFVQKSTLRGH-QRIHTGEKPYECSECGKTFVQKSTLRDHH-RIHTGEKSFQCNQCGKTFGQKSNLRIHQR-THTGEKTYQCNECEKSFWRKDHLIQHQKTHTGEKPFKCNECGKTFARTSTLRVHQRIHTGEKPFKCNECGKKFVRKAILSDHQRIHTG 624 HSP 2 Score: 157.532 bits (397), Expect = 1.085e-39 Identity = 90/227 (39.65%), Postives = 132/227 (58.15%), Query Frame = 2
Query: 2054 KKHQCNDCGLLFYKKSRLESHCNSVHKGLKLFECHECGKSFSRKDYLKIHQNKHEGNTPHKCKLCENSYLYRNQLIQHVNSAHKGIKSYQCEECGKSYYYSNDLKRHHDKIHKGLSPHTCDLCAKSFLRKDHLENHKNAVHLKIKSHNCEVCGKSYTRREHLNRHQKMH---HYFNCNECGKSFARE---NXHQKIH---HYFNCNECGKSFARENVLAIHLVTHKG 2707
K +C++CG F +KS L +H +H K ++C+ECGK+F +K L+ HQ H G P++C C +++ ++ L H + H G KS+QC +CGK++ ++L R H + H G + C+ C KSF RKDHL H+ H K C CGK++ R L HQ++H F CNECGK F R+ + HQ+IH F CN+CGK+F +++ L IH TH G
Sbjct: 430 KPFECSECGKTFSQKSHLSTH-QRIHTAEKPYKCNECGKTFVQKSTLRGHQRIHTGEKPYECSECGKTFVQKSTLRDH-HRIHTGEKSFQCNQCGKTFGQKSNL-RIHQRTHTGEKTYQCNECEKSFWRKDHLIQHQ-KTHTGEKPFKCNECGKTFARTSTLRVHQRIHTGEKPFKCNECGKKFVRKAILSDHQRIHTGEKPFQCNKCGKTFGQKSNLRIHQRTHSG 652 HSP 3 Score: 132.109 bits (331), Expect = 1.848e-31 Identity = 71/182 (39.01%), Postives = 108/182 (59.34%), Query Frame = 2
Query: 2054 KKHQCNDCGLLFYKKSRLESHCNSVHKGLKLFECHECGKSFSRKDYLKIHQNKHEGNTPHKCKLCENSYLYRNQLIQHVNSAHKGIKSYQCEECGKSYYYSNDLKRHHDKIHKGLSPHTCDLCAKSFLRKDHLENHKNAVHLKIKSHNCEVCGKSYTRREHLNRHQKMHH---YFNCNECGK 2590
K ++C++CG F +KS L H + +H G K F+C++CGK+F +K L+IHQ H G ++C CE S+ ++ LIQH H G K ++C ECGK++ ++ L R H +IH G P C+ C K F+RK L +H+ +H K C CGK++ ++ +L HQ+ H + CNE GK
Sbjct: 486 KPYECSECGKTFVQKSTLRDH-HRIHTGEKSFQCNQCGKTFGQKSNLRIHQRTHTGEKTYQCNECEKSFWRKDHLIQH-QKTHTGEKPFKCNECGKTFARTSTL-RVHQRIHTGEKPFKCNECGKKFVRKAILSDHQR-IHTGEKPFQCNKCGKTFGQKSNLRIHQRTHSGEKSYECNEYGK 663 HSP 4 Score: 125.946 bits (315), Expect = 1.663e-29 Identity = 69/167 (41.32%), Postives = 94/167 (56.29%), Query Frame = 1
Query: 718 FQCEECGKLFKMKFDMKKHVSTVHLKIKPYPCVDCDKAFAHKGDLTRHVNDVHNKMKSFHCGECGKSFARKSHLARHLNDHLGIRHFQCNDCGKLAATKAELKNHQIIHSGVKEFKCEKCDKSFALASYLKQHVKISHSETKDFKCSQCDKSYTSKPSLTKHQKRVH 1218
F+C ECGK F K + H +H KPY C +C K F K L H +H K + C ECGK+F +KS L H H G + FQCN CGK K+ L+ HQ H+G K ++C +C+KSF +L QH K +H+ K FKC++C K++ +L HQ R+H
Sbjct: 432 FECSECGKTFSQKSHLSTH-QRIHTAEKPYKCNECGKTFVQKSTLRGH-QRIHTGEKPYECSECGKTFVQKSTLRDHHRIHTGEKSFQCNQCGKTFGQKSNLRIHQRTHTGEKTYQCNECEKSFWRKDHLIQHQK-THTGEKPFKCNECGKTFARTSTLRVHQ-RIH 594 HSP 5 Score: 121.324 bits (303), Expect = 4.368e-28 Identity = 70/181 (38.67%), Postives = 99/181 (54.70%), Query Frame = 1
Query: 718 FQCEECGKLFKMKFDMKKHVSTVHLKIKPYPCVDCDKAFAHKGDLTRHVNDVHNKMKSFHCGECGKSFARKSHLARHLNDHLGIRHFQCNDCGKLAATKAELKNHQIIHSGVKEFKCEKCDKSFALASYLKQHVKISHSETKDFKCSQCDKSYTSKPSLTKHQKRVHKPNSTNSSEKTRIC 1260
++C ECGK F K ++ H +H K + C C K F K +L H H K++ C EC KSF RK HL +H H G + F+CN+CGK A + L+ HQ IH+G K FKC +C K F + L H +I H+ K F+C++C K++ K +L HQ+ T+S EK+ C
Sbjct: 488 YECSECGKTFVQKSTLRDH-HRIHTGEKSFQCNQCGKTFGQKSNLRIH-QRTHTGEKTYQCNECEKSFWRKDHLIQHQKTHTGEKPFKCNECGKTFARTSTLRVHQRIHTGEKPFKCNECGKKFVRKAILSDHQRI-HTGEKPFQCNKCGKTFGQKSNLRIHQR-------THSGEKSYEC 658 HSP 6 Score: 119.398 bits (298), Expect = 1.647e-27 Identity = 64/158 (40.51%), Postives = 94/158 (59.49%), Query Frame = 1
Query: 787 HLKIKPYPCVDCDKAFAHKGDLTRHVNDVHNKMKSFHCGECGKSFARKSHLARHLNDHLGIRHFQCNDCGKLAATKAELKNHQIIHSGVKEFKCEKCDKSFALASYLKQHVKISHSETKDFKCSQCDKSYTSKPSLTKHQKRVHKPNSTNSSEKTRIC 1260
H +KPY C +C K+F KG L +H H K F C ECGK+F++KSHL+ H H + ++CN+CGK K+ L+ HQ IH+G K ++C +C K+F S L+ H +I H+ K F+C+QC K++ K +L HQ+ T++ EKT C
Sbjct: 398 HSMMKPYKCNECGKSFCQKGHLIQH-QRTHTGEKPFECSECGKTFSQKSHLSTHQRIHTAEKPYKCNECGKTFVQKSTLRGHQRIHTGEKPYECSECGKTFVQKSTLRDHHRI-HTGEKSFQCNQCGKTFGQKSNLRIHQR-------THTGEKTYQC 546 HSP 7 Score: 92.8189 bits (229), Expect = 3.236e-19 Identity = 70/224 (31.25%), Postives = 114/224 (50.89%), Query Frame = 2
Query: 2069 NDCGLLFYKKSRLESHCNSVHKGLKLFECHECGKSFSRKDYLKIHQNKHEGNTPHKCKLCENSYLYRNQLIQHVNSA--HKGIKSYQCEECGKSYYYSNDLKRHHDKIHKGLSPHTCDLCAKSFLRKDHLENHKNAVHLKIKSHNCEVCGKSYTRREHLNRHQKMHHY---FNCNECGKSFARENX---HQKIH---HYFNCNECGKSFARENVLAIHLVTHKG 2707
N CG F +KS +E + N ++ G+K +E + G +F+RK +L P + EN + ++ V S+ H+ KSYQ + R + H + P+ C+ C KSF +K HL H+ H K C CGK+++++ HL+ HQ++H + CNECGK+F +++ HQ+IH + C+ECGK+F +++ L H H G
Sbjct: 312 NQCGKSF-EKSTVEEY-NKLNMGIKHYELNPSGNNFNRKAHL---------TDPQTAVIEENPLVSNDRTQTWVKSSEYHENKKSYQ-----------TSVHRVRRRSHSMMKPYKCNECGKSFCQKGHLIQHQR-THTGEKPFECSECGKTFSQKSHLSTHQRIHTAEKPYKCNECGKTFVQKSTLRGHQRIHTGEKPYECSECGKTFVQKSTLRDHHRIHTG 512 The following BLAST results are available for this feature:
BLAST of TCONS_00070644 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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