TCONS_00070635 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070635
Unique NameTCONS_00070635
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length438

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070635 ID=TCONS_00070635|Name=TCONS_00070635|organism=Clytia hemisphaerica|type=transcript|length=438bp
taaattttaaattttttgtggGGACTAATTTTCGAGAAAACAGCCCAAAT
TCACGCACAATTTAATCCACTTCAGGTAATCTTTTCGTTATTTGTTTTCA
GCATCAAACGTTGGAGACCATCTCAGTCATCCAATCCATTCGGACAACTG
TCTGGTGAATGAGGATGGTCCAGGAACATGTCCGGAAAAATCACCTGCAT
ATACTTGGAGAGATTACAGGTATTTGTTTCAACGCTTATGTTGAATCTTC
TTCCGTGTCAGACTGATTTCCGTCTTAGCAAAGTATATgaagagaatttc
agtctctaAATTCAagaatagcgagtttatgtatttgcacttttgaggac
caaaatcgaggacggtaagagtgctgatttaccgtcgtcctcagttggtc
atgatctagccaaattagaaccttaccgtctccgtcgc
Run BLAST on NCBI

transcript from alignment at scaffold_57:227541..227978+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070635 ID=TCONS_00070635|Name=TCONS_00070635|organism=Clytia hemisphaerica|type=transcript|length=438bp|location=Sequence derived from alignment at scaffold_57:227541..227978+ (Clytia hemisphaerica)
taaattttaaattttttgtggGGACTAATTTTCGAGAAAACAGCCCAAAT
TCACGCACAATTTAATCCACTTCAGGTAATCTTTTCGTTATTTGTTTTCA
GCATCAAACGTTGGAGACCATCTCAGTCATCCAATCCATTCGGACAACTG
TCTGGTGAATGAGGATGGTCCAGGAACATGTCCGGAAAAATCACCTGCAT
ATACTTGGAGAGATTACAGGTATTTGTTTCAACGCTTATGTTGAATCTTC
TTCCGTGTCAGACTGATTTCCGTCTTAGCAAAGTATATgaagagaatttc
agtctctaAATTCAagaatagcgagtttatgtatttgcacttttgaggac
caaaatcgaggacggtaagagtgctgatttaccgtcgtcctcagttggtc
atgatctagccaaattagaaccttaccgtctccgtcgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043945XLOC_043945Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070635-exon-scaffold_57-1491911889:227541..227978TCONS_00070635-exon-scaffold_57-1491911889:227541..227978Clytia hemisphaericaexon
TCONS_00070635-exon-scaffold_57-1510915933:227541..227978TCONS_00070635-exon-scaffold_57-1510915933:227541..227978Clytia hemisphaericaexon
TCONS_00070635-exon-scaffold_57-1575043694:227541..227978TCONS_00070635-exon-scaffold_57-1575043694:227541..227978Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:227541..227978 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.811545	0.793479	0	0.311532	0.77727	0.388969	0.90225	0.214373	0.534161	0.201249	0	0.757062	0.520958	0.634643	0.449826	0.788439	0.4548	0.471711	0.206106	0	0.19185	0	0	0	0.365828	1.07405	0.271843	0.303497	0.231689	0.224883
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070635 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top