Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070626 ID=TCONS_00070626|Name=TCONS_00070626|organism=Clytia hemisphaerica|type=transcript|length=2582bpRun BLAST on NCBI transcript from alignment at scaffold_57:194098..201039+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070626 ID=TCONS_00070626|Name=TCONS_00070626|organism=Clytia hemisphaerica|type=transcript|length=6942bp|location=Sequence derived from alignment at scaffold_57:194098..201039+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00070626 vs. Swiss-Prot (Human)
Match: PLST (Plastin-3 OS=Homo sapiens GN=PLS3 PE=1 SV=4) HSP 1 Score: 506.908 bits (1304), Expect = 2.639e-168 Identity = 282/472 (59.75%), Postives = 350/472 (74.15%), Query Frame = 3 Query: 12 DGIIFCKMINLSAPKTIDERAINKGRLNAFLIQENNLLVINSAQAIGCSVVNVHAEDIIKGKQHLILGLLWQIIRIGLFANITLQANPNIAALLEDGESIXXXXXXXXXXXXXRWVNYHLRKSGSNKRINNFSGDIKDSEAYAILLNQISP--QEFGVDRPERTMQ---IGDSTKRADLILKNADKIGCRKFVTAKDIVGGNSKLNLAFVANLFNHFPTLDPNDIXXXXXXXXXXXXXXXXXXRNWMNSLGVNPFVYHLYNDLSNGLVLFQLYEDIRKGTVNWDKVNKAPFKLATGGNMKKIENCNYAVQLGKIKNSYSLVGIGGEDIYNGTPTLVLALIWQMLRDYTTRMLASLTKQDGSKITDGAIVDWVNNKLNSCNKRTRIANFKDPTISTSLAVIDLVDSIKPGSVDYSLVTEGH-SDEDKELNAQYAISMSRKIGAKTYALPEDLVEVKPKMVLTVFACLMTRGLQ 1409 DGI+ CKMINLS P TIDERAINK +L F+IQEN L +NSA AIGC VVN+ AED+ GK HL+LGLLWQII+IGLFA+I L N +AALL DGE++E+L+KLSPEELLLRW N+HL SG K INNFS DIKDS+AY LLNQI+P Q+ G R + M D KRA+ +L+ ADK+GCR+FVT D+V GN KLNLAFVANLFN +P L + ++ E+REE+T+RNWMNSLGVNP V HLY DL + LV+ QLYE I K V+W KVNK P+ G NMKK+ENCNYAV+LGK +SLVGIGG+D+ +G TL LAL+WQ++R YT +L L DG K D IV+WVN L+ K T I +FKD TIS+SLAV+DL+D+I+PG ++Y LV G+ +++DK NA+YA+SM+R+IGA+ YALPEDLVEVKPKMV+TVFACLM RG++ Sbjct: 162 DGIVLCKMINLSVPDTIDERAINKKKLTPFIIQENLNLALNSASAIGCHVVNIGAEDLRAGKPHLVLGLLWQIIKIGLFADIELSRNEALAALLRDGETLEELMKLSPEELLLRWANFHLENSGWQK-INNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQADKLGCRQFVTPADVVSGNPKLNLAFVANLFNKYPALTKPENQDIDWTLLEGETREERTFRNWMNSLGVNPHVNHLYADLQDALVILQLYERI-KVPVDWSKVNKPPYP-KLGANMKKLENCNYAVELGKHPAKFSLVGIGGQDLNDGNQTLTLALVWQLMRRYTLNVLEDLG--DGQKANDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNNAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGRGMK 628 The following BLAST results are available for this feature:
BLAST of TCONS_00070626 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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