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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070613 ID=TCONS_00070613|Name=TCONS_00070613|organism=Clytia hemisphaerica|type=transcript|length=1691bpRun BLAST on NCBI transcript from alignment at scaffold_57:109655..111345+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070613 ID=TCONS_00070613|Name=TCONS_00070613|organism=Clytia hemisphaerica|type=transcript|length=1691bp|location=Sequence derived from alignment at scaffold_57:109655..111345+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00070613 vs. Swiss-Prot (Human)
Match: ZFP2 (Zinc finger protein 2 homolog OS=Homo sapiens GN=ZFP2 PE=1 SV=1) HSP 1 Score: 231.491 bits (589), Expect = 1.645e-68 Identity = 126/321 (39.25%), Postives = 178/321 (55.45%), Query Frame = 3
Query: 696 LLRVNIGVXXXXXXXXXEFKCQECGKILMDGGSLLAHENAHKGITPFECEVCGKCFPGKNNLRMHLKIHRDE--HSCQECGGIFTSKSDLIKHNRSAHQGTAPFECEECGKDFPKKAHLRVHKRIHAKE--FNCTECERSFALKSELTLHFQVTHQGIKSFQCNDCGKMFARKFTLQLHAATHSGIKPFHCERCDKYFSTEWHLKKHVRIHNGKIKKNHHCEHCDRYFVSGADLKDHKNSHTGNRPYECKACGKSFSRRDAFYTHKQSHNTIECFECQECGKSFTTKRKLTVHGYKHRTDKPFKCTVCGNCYTHNYILTKH 1646
+ R ++ V K +KC ECGK +L H+ H G P++C+ CGK F ++L H +IH E + C ECG FT +L H R+ H G P+EC ECGK F + HL VH+R H E + C++C ++F+ S LTLH Q H G K ++CN CGK F++ L H HSG+KPF C C K FS L +H RIH G+ K + C C ++F + L H+ HTG +PYEC CGK+FS+ H++ H + +EC +CGK+F LTVH H +KP++C CG ++ + LT+H
Sbjct: 140 IERSSLTVHQRIHTGEKPYKCNECGKAFSQSMNLTVHQRTHTGEKPYQCKECGKAFHKNSSLIQHERIHTGEKPYKCNECGKAFTQSMNLTVHQRT-HTGEKPYECNECGKAFSQSMHLIVHQRSHTGEKPYECSQCGKAFSKSSTLTLH-QRNHTGEKPYKCNKCGKSFSQSTYLIEHQRLHSGVKPFECNECGKAFSKNSSLTQHRRIHTGE--KPYECMVCGKHFTGRSSLTVHQVIHTGEKPYECNECGKAFSQSAYLIEHQRIHTGEKPYECDQCGKAFIKNSSLTVHQRTHTGEKPYQCNECGKAFSRSTNLTRH 456 HSP 2 Score: 220.32 bits (560), Expect = 2.549e-64 Identity = 116/303 (38.28%), Postives = 173/303 (57.10%), Query Frame = 3
Query: 750 FKCQECGKILMDGGSLLAHENAHKGITPFECEVCGKCFPGKNNLRMHLKIHRDE--HSCQECGGIFTSKSDLIKHNRSAHQGTAPFECEECGKDFPKKAHLRVHKRIHAKE--FNCTECERSFALKSELTLHFQVTHQGIKSFQCNDCGKMFARKFTLQLHAATHSGIKPFHCERCDKYFSTEWHLKKHVRIHNGKIKKNHHCEHCDRYFVSGADLKDHKNSHTGNRPYECKACGKSFSRRDAFYTHKQSHNTIECFECQECGKSFTTKRKLTVHGYKHRTDKPFKCTVCGNCYTHNYILTKH 1646
++C +C K SLL H+ H G P++C VCGK F +++L +H +IH E + C ECG F+ +L H R+ H G P++C+ECGK F K + L H+RIH E + C EC ++F LT+H Q TH G K ++CN+CGK F++ L +H +H+G KP+ C +C K FS L H R H G +K + C C + F L +H+ H+G +P+EC CGK+FS+ + H++ H + +EC CGK FT + LTVH H +KP++C CG ++ + L +H
Sbjct: 102 YECNQCSKTFSQSSSLLKHQRIHTGEKPYKCNVCGKHFIERSSLTVHQRIHTGEKPYKCNECGKAFSQSMNLTVHQRT-HTGEKPYQCKECGKAFHKNSSLIQHERIHTGEKPYKCNECGKAFTQSMNLTVH-QRTHTGEKPYECNECGKAFSQSMHLIVHQRSHTGEKPYECSQCGKAFSKSSTLTLHQRNHTG--EKPYKCNKCGKSFSQSTYLIEHQRLHSGVKPFECNECGKAFSKNSSLTQHRRIHTGEKPYECMVCGKHFTGRSSLTVHQVIHTGEKPYECNECGKAFSQSAYLIEH 400 HSP 3 Score: 206.453 bits (524), Expect = 3.648e-59 Identity = 112/294 (38.10%), Postives = 161/294 (54.76%), Query Frame = 3
Query: 705 VNIGVXXXXXXXXXEFKCQECGKILMDGGSLLAHENAHKGITPFECEVCGKCFPGKNNLRMHLKIHRDE--HSCQECGGIFTSKSDLIKHNRSAHQGTAPFECEECGKDFPKKAHLRVHKRIHAKE--FNCTECERSFALKSELTLHFQVTHQGIKSFQCNDCGKMFARKFTLQLHAATHSGIKPFHCERCDKYFSTEWHLKKHVRIHNGKIKKNHHCEHCDRYFVSGADLKDHKNSHTGNRPYECKACGKSFSRRDAFYTHKQSHNTIECFECQECGKSFTTKRKLTVHGYKH 1574
+N+ V K ++C+ECGK SL+ HE H G P++C CGK F NL +H + H E + C ECG F+ LI H RS H G P+EC +CGK F K + L +H+R H E + C +C +SF+ + L H Q H G+K F+CN+CGK F++ +L H H+G KP+ C C K+F+ L H IH G+ K + C C + F A L +H+ HTG +PYEC CGK+F + + H+++H + ++C ECGK+F+ LT H H
Sbjct: 171 MNLTVHQRTHTGEKPYQCKECGKAFHKNSSLIQHERIHTGEKPYKCNECGKAFTQSMNLTVHQRTHTGEKPYECNECGKAFSQSMHLIVHQRS-HTGEKPYECSQCGKAFSKSSTLTLHQRNHTGEKPYKCNKCGKSFSQSTYLIEH-QRLHSGVKPFECNECGKAFSKNSSLTQHRRIHTGEKPYECMVCGKHFTGRSSLTVHQVIHTGE--KPYECNECGKAFSQSAYLIEHQRIHTGEKPYECDQCGKAFIKNSSLTVHQRTHTGEKPYQCNECGKAFSRSTNLTRHQRTH 460 HSP 4 Score: 172.555 bits (436), Expect = 5.449e-47 Identity = 94/247 (38.06%), Postives = 138/247 (55.87%), Query Frame = 3
Query: 912 HSCQECGGIFTSKSDLIKHNRSAHQGTAPFECEECGKDFPKKAHLRVHKRIHAKE--FNCTECERSFALKSELTLHFQVTHQGIKSFQCNDCGKMFARKFTLQLHAATHSGIKPFHCERCDKYFSTEWHLKKHVRIHNGKIKKNHHCEHCDRYFVSGADLKDHKNSHTGNRPYECKACGKSFSRRDAFYTHKQSHNTIECFECQECGKSFTTKRKLTVHGYKHRTDKPFKCTVCGNCYTHNYILTKH 1646
H+C G T S+LIK R G +EC +C K F + + L H+RIH E + C C + F +S LT+H Q H G K ++CN+CGK F++ L +H TH+G KP+ C+ C K F L +H RIH G +K + C C + F +L H+ +HTG +PYEC CGK+FS+ H++SH + +EC +CGK+F+ LT+H H +KP+KC CG ++ + L +H
Sbjct: 74 HNCNSHGEDATQNSELIKTQR-MFVGKKIYECNQCSKTFSQSSSLLKHQRIHTGEKPYKCNVCGKHFIERSSLTVH-QRIHTGEKPYKCNECGKAFSQSMNLTVHQRTHTGEKPYQCKECGKAFHKNSSLIQHERIHTG--EKPYKCNECGKAFTQSMNLTVHQRTHTGEKPYECNECGKAFSQSMHLIVHQRSHTGEKPYECSQCGKAFSKSSTLTLHQRNHTGEKPYKCNKCGKSFSQSTYLIEH 316 HSP 5 Score: 133.65 bits (335), Expect = 9.765e-34 Identity = 71/166 (42.77%), Postives = 95/166 (57.23%), Query Frame = 3
Query: 750 FKCQECGKILMDGGSLLAHENAHKGITPFECEVCGKCFPGKNNLRMHLKIHRDE--HSCQECGGIFTSKSDLIKHNRSAHQGTAPFECEECGKDFPKKAHLRVHKRIHAKE--FNCTECERSFALKSELTLHFQVTHQGIKSFQCNDCGKMFARKFTLQLHAATHS 1235
+KC +CGK L+ H+ H G+ PFEC CGK F ++L H +IH E + C CG FT +S L H + H G P+EC ECGK F + A+L H+RIH E + C +C ++F S LT+H Q TH G K +QCN+CGK F+R L H TH+
Sbjct: 298 YKCNKCGKSFSQSTYLIEHQRLHSGVKPFECNECGKAFSKNSSLTQHRRIHTGEKPYECMVCGKHFTGRSSLTVH-QVIHTGEKPYECNECGKAFSQSAYLIEHQRIHTGEKPYECDQCGKAFIKNSSLTVH-QRTHTGEKPYQCNECGKAFSRSTNLTRHQRTHT 461 The following BLAST results are available for this feature:
BLAST of TCONS_00070613 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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