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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070610 ID=TCONS_00070610|Name=TCONS_00070610|organism=Clytia hemisphaerica|type=transcript|length=1670bpRun BLAST on NCBI transcript from alignment at scaffold_57:98346..111343+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070610 ID=TCONS_00070610|Name=TCONS_00070610|organism=Clytia hemisphaerica|type=transcript|length=12998bp|location=Sequence derived from alignment at scaffold_57:98346..111343+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00070610 vs. Swiss-Prot (Human)
Match: ZFP2 (Zinc finger protein 2 homolog OS=Homo sapiens GN=ZFP2 PE=1 SV=1) HSP 1 Score: 230.72 bits (587), Expect = 3.404e-68 Identity = 124/305 (40.66%), Postives = 172/305 (56.39%), Query Frame = 2
Query: 725 KEFKCQECGKILMDGGSLLAHENAHKGITPFECEVCGKCFPGKNNLRMHLKIHRDE--YSCLECGGIFTSKSDLIKHNRSAHQGTAPFECEVCGKHFPKKAHLRVHKRIHAKE--FNCTECERSFALKSELTLHFQVTHQGIKSFQCNDCGKMFARKFTLQLHAATHSGIKPFHCERCDKYFSTEWHLKKHVRIHNGKIKKNHHCEHCDRYFVSGADLKDHKNSHTGNRPYECKACGKSFSRRDAFYTHKQSHNTIECFECQECGKSFTTKRKLTVHGYKHRTDKPFKCTVCGNCYTHNYILTKH 1627
K +KC ECGK +L H+ H G P++C+ CGK F ++L H +IH E Y C ECG FT +L H R+ H G P+EC CGK F + HL VH+R H E + C++C ++F+ S LTLH Q H G K ++CN CGK F++ L H HSG+KPF C C K FS L +H RIH G+ K + C C ++F + L H+ HTG +PYEC CGK+FS+ H++ H + +EC +CGK+F LTVH H +KP++C CG ++ + LT+H
Sbjct: 156 KPYKCNECGKAFSQSMNLTVHQRTHTGEKPYQCKECGKAFHKNSSLIQHERIHTGEKPYKCNECGKAFTQSMNLTVHQRT-HTGEKPYECNECGKAFSQSMHLIVHQRSHTGEKPYECSQCGKAFSKSSTLTLH-QRNHTGEKPYKCNKCGKSFSQSTYLIEHQRLHSGVKPFECNECGKAFSKNSSLTQHRRIHTGE--KPYECMVCGKHFTGRSSLTVHQVIHTGEKPYECNECGKAFSQSAYLIEHQRIHTGEKPYECDQCGKAFIKNSSLTVHQRTHTGEKPYQCNECGKAFSRSTNLTRH 456 HSP 2 Score: 205.682 bits (522), Expect = 5.835e-59 Identity = 111/281 (39.50%), Postives = 156/281 (55.52%), Query Frame = 2
Query: 725 KEFKCQECGKILMDGGSLLAHENAHKGITPFECEVCGKCFPGKNNLRMHLKIHRDE--YSCLECGGIFTSKSDLIKHNRSAHQGTAPFECEVCGKHFPKKAHLRVHKRIHAKE--FNCTECERSFALKSELTLHFQVTHQGIKSFQCNDCGKMFARKFTLQLHAATHSGIKPFHCERCDKYFSTEWHLKKHVRIHNGKIKKNHHCEHCDRYFVSGADLKDHKNSHTGNRPYECKACGKSFSRRDAFYTHKQSHNTIECFECQECGKSFTTKRKLTVHGYKH 1555
K ++C+ECGK SL+ HE H G P++C CGK F NL +H + H E Y C ECG F+ LI H RS H G P+EC CGK F K + L +H+R H E + C +C +SF+ + L H Q H G+K F+CN+CGK F++ +L H H+G KP+ C C K+F+ L H IH G+ K + C C + F A L +H+ HTG +PYEC CGK+F + + H+++H + ++C ECGK+F+ LT H H
Sbjct: 184 KPYQCKECGKAFHKNSSLIQHERIHTGEKPYKCNECGKAFTQSMNLTVHQRTHTGEKPYECNECGKAFSQSMHLIVHQRS-HTGEKPYECSQCGKAFSKSSTLTLHQRNHTGEKPYKCNKCGKSFSQSTYLIEH-QRLHSGVKPFECNECGKAFSKNSSLTQHRRIHTGEKPYECMVCGKHFTGRSSLTVHQVIHTGE--KPYECNECGKAFSQSAYLIEHQRIHTGEKPYECDQCGKAFIKNSSLTVHQRTHTGEKPYQCNECGKAFSRSTNLTRHQRTH 460 HSP 3 Score: 199.519 bits (506), Expect = 9.216e-57 Identity = 114/309 (36.89%), Postives = 161/309 (52.10%), Query Frame = 2
Query: 713 PKMIKEFKCQECGKILMDGGSLLAHENAHKGITPFECEVCGKCFPGKNNLRMHLKIHRDE--YSCLECGGIFTSKSDLIKHNRSAHQGTAPFECEVCGKHFPKKAHLRVHKRIHAKE--FNCTECERSFALKSELTLHFQVTHQGIKSFQCNDCGKMFARKFTLQLHAATHSGIKPFHCERCDKYFSTEWHLKKHVRIHNGKIKKNHHCEHCDRYFVSGADLKDHKNSHTGNRPYECKACGKSFSRRDAFYTHKQSHNTIECFECQECGKSFTTKRKLTVHGYKHRTDKPFKCTVCGNCYTHNYILTKH 1627
P + + C G+ L+ + G +EC C K F ++L H +IH E Y C CG F +S L H R H G P++C CGK F + +L VH+R H E + C EC ++F S L H ++ H G K ++CN+CGK F + L +H TH+G KP+ C C K FS HL H R H G+ K + C C + F + L H+ +HTG +PY+C CGKSFS+ H++ H+ ++ FEC ECGK+F+ LT H H +KP++C VCG +T LT H
Sbjct: 68 PMVKRPHNCNSHGEDATQNSELIKTQRMFVGKKIYECNQCSKTFSQSSSLLKHQRIHTGEKPYKCNVCGKHFIERSSLTVHQR-IHTGEKPYKCNECGKAFSQSMNLTVHQRTHTGEKPYQCKECGKAFHKNSSLIQHERI-HTGEKPYKCNECGKAFTQSMNLTVHQRTHTGEKPYECNECGKAFSQSMHLIVHQRSHTGE--KPYECSQCGKAFSKSSTLTLHQRNHTGEKPYKCNKCGKSFSQSTYLIEHQRLHSGVKPFECNECGKAFSKNSSLTQHRRIHTGEKPYECMVCGKHFTGRSSLTVH 372 HSP 4 Score: 135.576 bits (340), Expect = 2.132e-34 Identity = 72/168 (42.86%), Postives = 96/168 (57.14%), Query Frame = 2
Query: 725 KEFKCQECGKILMDGGSLLAHENAHKGITPFECEVCGKCFPGKNNLRMHLKIHRDE--YSCLECGGIFTSKSDLIKHNRSAHQGTAPFECEVCGKHFPKKAHLRVHKRIHAKE--FNCTECERSFALKSELTLHFQVTHQGIKSFQCNDCGKMFARKFTLQLHAATHS 1216
K +KC +CGK L+ H+ H G+ PFEC CGK F ++L H +IH E Y C+ CG FT +S L H + H G P+EC CGK F + A+L H+RIH E + C +C ++F S LT+H Q TH G K +QCN+CGK F+R L H TH+
Sbjct: 296 KPYKCNKCGKSFSQSTYLIEHQRLHSGVKPFECNECGKAFSKNSSLTQHRRIHTGEKPYECMVCGKHFTGRSSLTVH-QVIHTGEKPYECNECGKAFSQSAYLIEHQRIHTGEKPYECDQCGKAFIKNSSLTVH-QRTHTGEKPYQCNECGKAFSRSTNLTRHQRTHT 461 HSP 5 Score: 114.775 bits (286), Expect = 2.984e-27 Identity = 73/179 (40.78%), Postives = 94/179 (52.51%), Query Frame = 2
Query: 605 KEVKCIKCITIFESTKLNNEKQKDLLRVNIGVKIPKPKMIKEFKCQECGKILMDGGSLLAHENAHKGITPFECEVCGKCFPGKNNLRMHLKIHRDE--YSCLECGGIFTSKSDLIKHNRSAHQGTAPFECEVCGKHFPKKAHLRVHKRIHAKE--FNCTECERSFALKSELTLHFQVTH 1129
K KC KC F + E Q R++ GVK F+C ECGK SL H H G P+EC VCGK F G+++L +H IH E Y C ECG F+ + LI+H R H G P+EC+ CGK F K + L VH+R H E + C EC ++F+ + LT H Q TH
Sbjct: 296 KPYKCNKCGKSFSQSTYLIEHQ----RLHSGVK--------PFECNECGKAFSKNSSLTQHRRIHTGEKPYECMVCGKHFTGRSSLTVHQVIHTGEKPYECNECGKAFSQSAYLIEHQR-IHTGEKPYECDQCGKAFIKNSSLTVHQRTHTGEKPYQCNECGKAFSRSTNLTRH-QRTH 460 The following BLAST results are available for this feature:
BLAST of TCONS_00070610 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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