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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070608 ID=TCONS_00070608|Name=TCONS_00070608|organism=Clytia hemisphaerica|type=transcript|length=1955bpRun BLAST on NCBI transcript from alignment at scaffold_57:95736..109017+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070608 ID=TCONS_00070608|Name=TCONS_00070608|organism=Clytia hemisphaerica|type=transcript|length=13282bp|location=Sequence derived from alignment at scaffold_57:95736..109017+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00070608 vs. Swiss-Prot (Human)
Match: ZN420 (Zinc finger protein 420 OS=Homo sapiens GN=ZNF420 PE=1 SV=1) HSP 1 Score: 321.242 bits (822), Expect = 5.733e-99 Identity = 165/365 (45.21%), Postives = 223/365 (61.10%), Query Frame = 1
Query: 673 INEKKYACKECGKFFVDKQNCETHQNSHKGLKPYECKICGKHFGGKKNLSSHQTVHKDLKPFKCEECGKSFSRRGSLKSHLVIHKGTKPFECEECGKVFARNTGLKKHLEVHDNT-TFQCEECDKSFTSRDGYNKHRKIHIEGVKPHLCEVCGKSFSIKSRLSDHQNIHTGNKPHDCKVCGKSFAARNNLKTHRQIHN-TKSFKCPDCNKYFISNRKLTLHKSVHLMEKPFKCQECGKSYSHQFMLAKHESAVHKQIKPFNCEECGKSFANKGNLNMHLVIHTGIKPFECKECGKSFARKGDLSGHQRYVHGPKKPYQCKECGKQFARKGDLSSHLLNIHELKKPYQCKECDKSFVKKVQFEHHQ 1761
EK Y CKECGK F+ HQ H G KPYECK CG+ F L HQ +H KP+KCEECGK+F R L H IH KP+EC+ECGK+F+ + L +H +H +QC+EC K+F +H++IH G KP+ C+ CGK+FS S L+ H+ IHTG KP++CK CGKSF + L H++IH K ++C +C F + L+ H+ +H EKP+ C ECGK+++ +L +H+ +H KP+ C+ECGK+F L H IHTG KP+ECKECGK+F+ L+ HQR +H +KPY+C+EC K F + LS H IH +KPYQCKEC K+F + Q HQ
Sbjct: 302 TGEKPYECKECGKAFICGSQLSQHQKIHNGEKPYECKECGRAFIRGSLLMQHQRIHTGEKPYKCEECGKAFIRGSQLTQHQRIHTNEKPYECKECGKMFSHGSQLTQHQRIHTGEKPYQCKECGKAFNRGSLLTRHQRIHT-GEKPYECKECGKTFSRGSELTQHERIHTGEKPYECKECGKSFIRGSQLTQHQRIHTGEKPYECKECRMAFTQSSHLSQHQRLHTGEKPYVCNECGKAFARGLLLIQHQR-IHTGEKPYQCKECGKAFIRGSQLTQHQRIHTGEKPYECKECGKAFSHGSQLTLHQR-IHTGEKPYECRECRKAFTQSSHLSRH-QRIHTGEKPYQCKECGKAFTRGSQLTQHQ 662 HSP 2 Score: 320.857 bits (821), Expect = 7.292e-99 Identity = 167/364 (45.88%), Postives = 230/364 (63.19%), Query Frame = 1
Query: 676 NEKKYACKECGKFFVDKQNCETHQNSHKGLKPYECKICGKHFGGKKNLSSHQTVHKDLKPFKCEECGKSFSRRGSLKSHLVIHKGTKPFECEECGKVFARNTGLKKHLEVHDNT-TFQCEECDKSFTSRDGYNKHRKIHIEGVKPHLCEVCGKSFSIKSRLSDHQNIHTGNKPHDCKVCGKSFAARNNLKTHRQIHN-TKSFKCPDCNKYFISNRKLTLHKSVHLMEKPFKCQECGKSYSHQFMLAKHESAVHKQIKPFNCEECGKSFANKGNLNMHLVIHTGIKPFECKECGKSFARKGDLSGHQRYVHGPKKPYQCKECGKQFARKGDLSSHLLNIHELKKPYQCKECDKSFVKKVQFEHHQ 1761
EK Y CKECGK F + HQ+ H G KPYECK CGK F LS HQ +H KP+ C+ECGK+F++ L H IH G KP++CEECGK F R++ L +H +VH ++C+EC K+FT H+++H G K + C+ C K F+ S+L H+ IHTG KP++CK CGK+F + L H++IHN K ++C +C + FI L H+ +H EKP+KC+ECGK++ L +H+ +H KP+ C+ECGK F++ L H IHTG KP++CKECGK+F R L+ HQR +H +KPY+CKECGK F+R +L+ H IH +KPY+CKEC KSF++ Q HQ
Sbjct: 135 TEKPYKCKECGKAFRRASHLTQHQSIHTGEKPYECKQCGKAFSRDSQLSLHQRLHTGEKPYACKECGKAFTQSSQLILHHRIHTGEKPYKCEECGKAFIRSSQLTRHQKVHTGEKPYECKECGKAFTQNSQLTLHQRLHT-GEKLYECKECRKVFTQLSQLILHKRIHTGEKPYECKECGKAFICGSQLSQHQKIHNGEKPYECKECGRAFIRGSLLMQHQRIHTGEKPYKCEECGKAFIRGSQLTQHQR-IHTNEKPYECKECGKMFSHGSQLTQHQRIHTGEKPYQCKECGKAFNRGSLLTRHQR-IHTGEKPYECKECGKTFSRGSELTQH-ERIHTGEKPYECKECGKSFIRGSQLTQHQ 494 HSP 3 Score: 298.901 bits (764), Expect = 1.546e-90 Identity = 163/369 (44.17%), Postives = 217/369 (58.81%), Query Frame = 1
Query: 661 NKTTINEKKYACKECGKFFVDKQNCETHQNSHKGLKPYECKICGKHFGGKKNLSSHQTVHKDLKPFKCEECGKSFSRRGSLKSHLVIHKGTKPFECEECGKVFARNTGLKKHLEVHDNT-TFQCEECDKSFTSRDGYNKHRKIHIEGVKPHLCEVCGKSFSIKSRLSDHQNIHTGNKPHDCKVCGKSFAARNNLKTHRQIHN-TKSFKCPDCNKYFISNRKLTLHKSVHLMEKPFKCQECGKSYSHQFMLAKHESAVHKQIKPFNCEECGKSFANKGNLNMHLVIHTGIKPFECKECGKSFARKGDLSGHQRYVHGPKKPYQCKECGKQFARKGDLSSHLLNIHELKKPYQCKECDKSFVKKVQFEHHQ 1761
K EK Y CKECGK F HQ H G K YECK C K F L H+ +H KP++C+ECGK+F L H IH G KP+EC+ECG+ F R + L +H +H ++CEEC K+F +H++IH KP+ C+ CGK FS S+L+ HQ IHTG KP+ CK CGK+F + L H++IH K ++C +C K F +LT H+ +H EKP++C+ECGKS+ L +H+ +H KP+ C+EC +F +L+ H +HTG KP+ C ECGK+FAR L HQR +H +KPYQCKECGK F R L+ H IH +KPY+CKEC K+F Q HQ
Sbjct: 242 QKVHTGEKPYECKECGKAFTQNSQLTLHQRLHTGEKLYECKECRKVFTQLSQLILHKRIHTGEKPYECKECGKAFICGSQLSQHQKIHNGEKPYECKECGRAFIRGSLLMQHQRIHTGEKPYKCEECGKAFIRGSQLTQHQRIHT-NEKPYECKECGKMFSHGSQLTQHQRIHTGEKPYQCKECGKAFNRGSLLTRHQRIHTGEKPYECKECGKTFSRGSELTQHERIHTGEKPYECKECGKSFIRGSQLTQHQR-IHTGEKPYECKECRMAFTQSSHLSQHQRLHTGEKPYVCNECGKAFARGLLLIQHQR-IHTGEKPYQCKECGKAFIRGSQLTQH-QRIHTGEKPYECKECGKAFSHGSQLTLHQ 606 HSP 4 Score: 257.299 bits (656), Expect = 3.957e-75 Identity = 130/298 (43.62%), Postives = 180/298 (60.40%), Query Frame = 1
Query: 673 INEKKYACKECGKFFVDKQNCETHQNSHKGLKPYECKICGKHFGGKKNLSSHQTVHKDLKPFKCEECGKSFSRRGSLKSHLVIHKGTKPFECEECGKVFARNTGLKKHLEVHDNT-TFQCEECDKSFTSRDGYNKHRKIHIEGVKPHLCEVCGKSFSIKSRLSDHQNIHTGNKPHDCKVCGKSFAARNNLKTHRQIHN-TKSFKCPDCNKYFISNRKLTLHKSVHLMEKPFKCQECGKSYSHQFMLAKHESAVHKQIKPFNCEECGKSFANKGNLNMHLVIHTGIKPFECKECGKSFA 1560
NEK Y CKECGK F HQ H G KPY+CK CGK F L+ HQ +H KP++C+ECGK+FSR L H IH G KP+EC+ECGK F R + L +H +H ++C+EC +FT ++H+++H G KP++C CGK+F+ L HQ IHTG KP+ CK CGK+F + L H++IH K ++C +C K F +LTLH+ +H EKP++C+EC K+++ L++H+ +H KP+ C+ECGK+F L H IH K FE KECG F+
Sbjct: 386 TNEKPYECKECGKMFSHGSQLTQHQRIHTGEKPYQCKECGKAFNRGSLLTRHQRIHTGEKPYECKECGKTFSRGSELTQHERIHTGEKPYECKECGKSFIRGSQLTQHQRIHTGEKPYECKECRMAFTQSSHLSQHQRLHT-GEKPYVCNECGKAFARGLLLIQHQRIHTGEKPYQCKECGKAFIRGSQLTQHQRIHTGEKPYECKECGKAFSHGSQLTLHQRIHTGEKPYECRECRKAFTQSSHLSRHQR-IHTGEKPYQCKECGKAFTRGSQLTQHQRIHISEKSFEYKECGIDFS 681 HSP 5 Score: 202.216 bits (513), Expect = 1.649e-55 Identity = 107/266 (40.23%), Postives = 153/266 (57.52%), Query Frame = 1
Query: 628 PKKIDAGGKKVNKTTI---------NEKKYACKECGKFFVDKQNCETHQNSHKGLKPYECKICGKHFGGKKNLSSHQTVHKDLKPFKCEECGKSFSRRGSLKSHLVIHKGTKPFECEECGKVFARNTGLKKHLEVHDNT-TFQCEECDKSFTSRDGYNKHRKIHIEGVKPHLCEVCGKSFSIKSRLSDHQNIHTGNKPHDCKVCGKSFAARNNLKTHRQIHN-TKSFKCPDCNKYFISNRKLTLHKSVHLMEKPFKCQECGKSYSH 1392
P + GK N+ ++ EK Y CKECGK F H+ H G KPYECK CGK F L+ HQ +H KP++C+EC +F++ L H +H G KP+ C ECGK FAR L +H +H +QC+EC K+F +H++IH G KP+ C+ CGK+FS S+L+ HQ IHTG KP++C+ C K+F ++L H++IH K ++C +C K F +LT H+ +H+ EK F+ +ECG +SH
Sbjct: 418 PYQCKECGKAFNRGSLLTRHQRIHTGEKPYECKECGKTFSRGSELTQHERIHTGEKPYECKECGKSFIRGSQLTQHQRIHTGEKPYECKECRMAFTQSSHLSQHQRLHTGEKPYVCNECGKAFARGLLLIQHQRIHTGEKPYQCKECGKAFIRGSQLTQHQRIHT-GEKPYECKECGKAFSHGSQLTLHQRIHTGEKPYECRECRKAFTQSSHLSRHQRIHTGEKPYQCKECGKAFTRGSQLTQHQRIHISEKSFEYKECGIDFSH 682 HSP 6 Score: 170.244 bits (430), Expect = 7.517e-45 Identity = 97/243 (39.92%), Postives = 139/243 (57.20%), Query Frame = 1
Query: 1135 FSIKSRLSDHQNIHTGNKPHDCKVCGKSFAARNNLKTHRQIHN-TKSFKCPDCNKYFISNRKLTLHKSVHLMEKPFKCQECGKSYSHQFMLAKHESAVHKQIKPFNCEECGKSFANKGNLNMHLVIHTGIKPFECKECGKSFARKGDLSGHQRYVHGPKKPYQCKECGKQFARKGDLSSHLLNIHELKKPYQCKECDKSFVKKVQFEHHQESLHKKDTTIES*NFFQIFYARQCFLLNLLKIH 1860
F+ + LS H H+ KP+ CK CGK+F ++L H+ IH K ++C C K F + +L+LH+ +H EKP+ C+ECGK+++ L H +H KP+ CEECGK+F L H +HTG KP+ECKECGK+F + L+ HQR +H +K Y+CKEC K F + L H IH +KPY+CKEC K+F+ Q HQ+ +H + E + F R L+ +IH
Sbjct: 120 FNQHTYLSQHSRCHSTEKPYKCKECGKAFRRASHLTQHQSIHTGEKPYECKQCGKAFSRDSQLSLHQRLHTGEKPYACKECGKAFTQSSQLILHHR-IHTGEKPYKCEECGKAFIRSSQLTRHQKVHTGEKPYECKECGKAFTQNSQLTLHQR-LHTGEKLYECKECRKVFTQLSQLILHK-RIHTGEKPYECKECGKAFICGSQLSQHQK-IHNGEKPYECKECGRAF-IRGSLLMQHQRIH 357 HSP 7 Score: 93.2041 bits (230), Expect = 1.194e-19 Identity = 71/231 (30.74%), Postives = 103/231 (44.59%), Query Frame = 1
Query: 310 ISQEIRNESEQETCELLNCGDLSDMNRVKFPQNLEAMQGKKDDDMTSITLKIELDVDLSENNVLNERDDNLKFVCKICKK-----LCLIEFLDKSNSDNSLICIKCFEDVNPKKIDAGGKKVNKTTIN--EKKYACKECGKFFVDKQNCETHQNSHKGLKPYECKICGKHFGGKKNLSSHQTVHKDLKPFKCEECGKSFSRRGSLKSHLVIHKGTKPFECEECGKVFARNT 981
++Q R + ++ E CG S + + Q+ G+K + + LS++ L+ + +VC C K L LI+ + C +C K G + I+ EK Y CKECGK F HQ H G KPYEC+ C K F +LS HQ +H KP++C+ECGK+F+R L H IH K FE +ECG F+ +
Sbjct: 462 LTQHERIHTGEKPYECKECGK-SFIRGSQLTQHQRIHTGEKPYECKECRMAFTQSSHLSQHQRLHTGEK--PYVCNECGKAFARGLLLIQHQRIHTGEKPYQCKEC-----GKAFIRGSQLTQHQRIHTGEKPYECKECGKAFSHGSQLTLHQRIHTGEKPYECRECRKAFTQSSHLSRHQRIHTGEKPYQCKECGKAFTRGSQLTQHQRIHISEKSFEYKECGIDFSHGS 684 The following BLAST results are available for this feature:
BLAST of TCONS_00070608 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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