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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070605 ID=TCONS_00070605|Name=TCONS_00070605|organism=Clytia hemisphaerica|type=transcript|length=3596bpRun BLAST on NCBI protein sequence of TCONS_00070605-protein >TCONS_00070605-protein ID=TCONS_00070605-protein|Name=TCONS_00070605-protein|organism=Clytia hemisphaerica|type=polypeptide|length=426bp MDFGIENLKIKAFGKILAFSFDIRIKGNRVGFCDISIENINSKLCFGEHGRun BLAST on NCBI transcript from alignment at scaffold_57:71258..75280+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070605 ID=TCONS_00070605|Name=TCONS_00070605|organism=Clytia hemisphaerica|type=transcript|length=4023bp|location=Sequence derived from alignment at scaffold_57:71258..75280+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_57:71258..75280+ >TCONS_00070605 ID=TCONS_00070605|Name=TCONS_00070605|organism=Clytia hemisphaerica|type=CDS|length=1281bp|location=Sequence derived from alignment at scaffold_57:71258..75280+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070605 vs. Swiss-Prot (Human)
Match: ZNF25 (Zinc finger protein 25 OS=Homo sapiens GN=ZNF25 PE=2 SV=2) HSP 1 Score: 145.976 bits (367), Expect = 1.531e-36 Identity = 78/171 (45.61%), Postives = 106/171 (61.99%), Query Frame = 1
Query: 2782 FHCEKCDSLFTSNSDLRRHVKIVHDKIKRYQCDDCDKTYALKGDLNRHTNAVHKGIKPYQCNVCEMSFARKAHLTNHQMVHTGIRRFQCNECGQLTNDKFHLKKHQMTHSREKKFECKECGKSFALQCYLKTHQTITHSTNKDFQCKECEKSFACKRYLVKHQRIHKTKEP 3294
+ C+KC F+ N DL RH KI H + K Y+C +C K + L+RH H G KPY+CN CE SF +K HLT HQ HTG + F+C ECG+ K +L HQ TH+ EK +ECKECGK+F+ + +L HQ + H+ K ++CKEC K F+ +L HQR H ++P
Sbjct: 146 YDCDKCGKSFSKNEDLIRHQKI-HTRDKTYECKECKKIFYHLSSLSRHLR-THAGEKPYECNQCEKSFYQKPHLTEHQKTHTGEKPFECTECGKFFYVKAYLMVHQKTHTGEKPYECKECGKAFSQKSHLTVHQRM-HTGEKPYKCKECGKFFSRNSHLKTHQRSHTGEKP 313 HSP 2 Score: 130.568 bits (327), Expect = 1.594e-31 Identity = 85/190 (44.74%), Postives = 110/190 (57.89%), Query Frame = 3
Query: 1032 CEKCPKTFASKYHLQRHIKVVHDKVKEFECKECGKYFALKSDLRRHTQSVHEGLKSFQCVECGMAFGRXXXXXXXXXXXXXXXPFQCNECGKLFTDSYSLKMHKASHSGNKPHKCGECEKSFCYIGQLKLHIDITHKGLQLFKCQECGKSYSRKVDLTKHVDNIHKGVVYPCKQCEKTFKNKRNLILHQK 1601
C +C K+F K HL H K H K FEC ECGK+F +K+ L H Q H G K ++C ECG AF + HL HQ HTG KP++C ECGK F+ + LK H+ SH+G KP++C EC K F L +H TH G + F+C +CGK++ K DLTKH Y C +C K+F L LHQ+
Sbjct: 204 CNQCEKSFYQKPHLTEHQKT-HTGEKPFECTECGKFFYVKAYLMVH-QKTHTGEKPYECKECGKAFSQKSHLTVHQRMHTGEKPYKCKECGKFFSRNSHLKTHQRSHTGEKPYECKECRKCFYQKSALTVH-QRTHTGEKPFECNKCGKTFYYKSDLTKHQRKHTGEKPYECTECGKSFAVNSVLRLHQR 390 HSP 3 Score: 127.487 bits (319), Expect = 1.468e-30 Identity = 71/171 (41.52%), Postives = 100/171 (58.48%), Query Frame = 1
Query: 2782 FHCEKCDSLFTSNSDLRRHVKIVHDKIKRYQCDDCDKTYALKGDLNRHTNAVHKGIKPYQCNVCEMSFARKAHLTNHQMVHTGIRRFQCNECGQLTNDKFHLKKHQMTHSREKKFECKECGKSFALQCYLKTHQTITHSTNKDFQCKECEKSFACKRYLVKHQRIHKTKEP 3294
+ C++C F+ S L H ++ H K Y+C +C K ++ L H + H G KPY+C C F +K+ LT HQ HTG + F+CN+CG+ K L KHQ H+ EK +EC ECGKSFA+ L+ HQ TH+ K + CKEC KSF+ K + + HQR H ++P
Sbjct: 258 YECKECGKAFSQKSHLTVHQRM-HTGEKPYKCKECGKFFSRNSHLKTHQRS-HTGEKPYECKECRKCFYQKSALTVHQRTHTGEKPFECNKCGKTFYYKSDLTKHQRKHTGEKPYECTECGKSFAVNSVLRLHQR-THTGEKPYACKECGKSFSQKSHFIIHQRKHTGEKP 425 HSP 4 Score: 124.02 bits (310), Expect = 1.672e-29 Identity = 69/171 (40.35%), Postives = 98/171 (57.31%), Query Frame = 1
Query: 2782 FHCEKCDSLFTSNSDLRRHVKIVHDKIKRYQCDDCDKTYALKGDLNRHTNAVHKGIKPYQCNVCEMSFARKAHLTNHQMVHTGIRRFQCNECGQLTNDKFHLKKHQMTHSREKKFECKECGKSFALQCYLKTHQTITHSTNKDFQCKECEKSFACKRYLVKHQRIHKTKEP 3294
+ C +C+ F L H K H K ++C +C K + +K L H H G KPY+C C +F++K+HLT HQ +HTG + ++C ECG+ + HLK HQ +H+ EK +ECKEC K F + L HQ TH+ K F+C +C K+F K L KHQR H ++P
Sbjct: 202 YECNQCEKSFYQKPHLTEHQK-THTGEKPFECTECGKFFYVKAYLMVH-QKTHTGEKPYECKECGKAFSQKSHLTVHQRMHTGEKPYKCKECGKFFSRNSHLKTHQRSHTGEKPYECKECRKCFYQKSALTVHQR-THTGEKPFECNKCGKTFYYKSDLTKHQRKHTGEKP 369 HSP 5 Score: 122.479 bits (306), Expect = 4.877e-29 Identity = 81/190 (42.63%), Postives = 110/190 (57.89%), Query Frame = 3
Query: 1032 CEKCPKTFASKYHLQRHIKVVHDKVKEFECKECGKYFALKSDLRRHTQSVHEGLKSFQCVECGMAFGRXXXXXXXXXXXXXXXPFQCNECGKLFTDSYSLKMHKASHSGNKPHKCGECEKSFCYIGQLKLHIDITHKGLQLFKCQECGKSYSRKVDLTKHVDNIHKGVVYPCKQCEKTFKNKRNLILHQK 1601
C++C K F+ K HL H ++ H K ++CKECGK+F+ S L+ H +S H G K ++C EC F + L HQ THTG KPF+CN+CGK F L H+ H+G KP++C EC KSF L+LH TH G + + C+ECGKS+S+K H Y C++C +TF K L HQK
Sbjct: 260 CKECGKAFSQKSHLTVHQRM-HTGEKPYKCKECGKFFSRNSHLKTHQRS-HTGEKPYECKECRKCFYQKSALTVHQRTHTGEKPFECNKCGKTFYYKSDLTKHQRKHTGEKPYECTECGKSFAVNSVLRLH-QRTHTGEKPYACKECGKSFSQKSHFIIHQRKHTGEKPYECQECGETFIQKSQLTAHQK 446 HSP 6 Score: 119.398 bits (298), Expect = 5.401e-28 Identity = 80/190 (42.11%), Postives = 112/190 (58.95%), Query Frame = 3
Query: 1032 CEKCPKTFASKYHLQRHIKVVHDKVKEFECKECGKYFALKSDLRRHTQSVHEGLKSFQCVECGMAFGRXXXXXXXXXXXXXXXPFQCNECGKLFTDSYSLKMHKASHSGNKPHKCGECEKSFCYIGQLKLHIDITHKGLQLFKCQECGKSYSRKVDLTKHVDNIHKGVVYPCKQCEKTFKNKRNLILHQK 1601
C+KC K+F+ L RH K +H + K +ECKEC K F S L RH ++ H G K ++C +C +F + HL +HQ THTG KPF+C ECGK F L +H+ +H+G KP++C EC K+F L +H + H G + +KC+ECGK +SR L H + Y CK+C K F K L +HQ+
Sbjct: 148 CDKCGKSFSKNEDLIRHQK-IHTRDKTYECKECKKIFYHLSSLSRHLRT-HAGEKPYECNQCEKSFYQKPHLTEHQKTHTGEKPFECTECGKFFYVKAYLMVHQKTHTGEKPYECKECGKAFSQKSHLTVHQRM-HTGEKPYKCKECGKFFSRNSHLKTHQRSHTGEKPYECKECRKCFYQKSALTVHQR 334 HSP 7 Score: 114.005 bits (284), Expect = 2.267e-26 Identity = 65/169 (38.46%), Postives = 95/169 (56.21%), Query Frame = 1
Query: 2782 FHCEKCDSLFTSNSDLRRHVKIVHDKIKRYQCDDCDKTYALKGDLNRHTNAVHKGIKPYQCNVCEMSFARKAHLTNHQMVHTGIRRFQCNECGQLTNDKFHLKKHQMTHSREKKFECKECGKSFALQCYLKTHQTITHSTNKDFQCKECEKSFACKRYLVKHQRIHKTK 3288
+ C++C F+ NS L+ H + H K Y+C +C K + K L H H G KP++CN C +F K+ LT HQ HTG + ++C ECG+ L+ HQ TH+ EK + CKECGKSF+ + + HQ H+ K ++C+EC ++F K L HQ+ H K
Sbjct: 286 YKCKECGKFFSRNSHLKTHQR-SHTGEKPYECKECRKCFYQKSALTVH-QRTHTGEKPFECNKCGKTFYYKSDLTKHQRKHTGEKPYECTECGKSFAVNSVLRLHQRTHTGEKPYACKECGKSFSQKSHFIIHQR-KHTGEKPYECQECGETFIQKSQLTAHQKTHTKK 451 HSP 8 Score: 108.997 bits (271), Expect = 1.133e-24 Identity = 80/202 (39.60%), Postives = 109/202 (53.96%), Query Frame = 3
Query: 1002 QKPNKKDRCL-CEKCPKTFASKYHLQRHIKVVHDKVKEFECKECGKYFALKSDLRRHTQSVHEGLKSFQCVECGMAFGRXXXXXXXXXXXXXXXPFQCNECGKLFTDSYSLKMHKASHSGNKPHKCGECEKSFCYIGQLKLHIDITHKGLQLFKCQECGKSYSRKVDLTKHVDNIHKGVVYPCKQCEKTFKNKRNLILHQKK 1604
QK + +D+ C++C K F L RH++ H K +EC +C K F K L H Q H G K F+C ECG F +L HQ THTG KP++C ECGK F+ L +H+ H+G KP+KC EC K F LK H +H G + ++C+EC K + +K LT H + C +C KTF K +L HQ+K
Sbjct: 165 QKIHTRDKTYECKECKKIFYHLSSLSRHLRT-HAGEKPYECNQCEKSFYQKPHLTEH-QKTHTGEKPFECTECGKFFYVKAYLMVHQKTHTGEKPYECKECGKAFSQKSHLTVHQRMHTGEKPYKCKECGKFFSRNSHLKTH-QRSHTGEKPYECKECRKCFYQKSALTVHQRTHTGEKPFECNKCGKTFYYKSDLTKHQRK 363 HSP 9 Score: 102.064 bits (253), Expect = 1.844e-22 Identity = 75/180 (41.67%), Postives = 97/180 (53.89%), Query Frame = 3
Query: 1071 LQRHIKVVHDKVKEFECKECGKYFALKSDLRRHTQSVHEGLKSFQCVECGMAFGRXXXXXXXXXXXXXXXPFQCNECGKLFTDSYSLKMHKASHSGNKPHKCGECEKSFCYIGQLKLHIDITHKGLQLFKCQECGKSYSRKVDLTKHVDNIHKGVVYPCKQCEKTFKNKRNLILHQKKMH 1610
L +H K H K ECKECGK+F KS L H Q H KS+ C +CG +F + L +HQ HT K ++C EC K+F SL H +H+G KP++C +CEKSF L H TH G + F+C ECGK + K L H Y CK+C K F K +L +HQ +MH
Sbjct: 105 LTKHQKT-HTTEKACECKECGKFFCQKSALIVH-QHTHSKGKSYDCDKCGKSFSKNEDLIRHQKIHTRDKTYECKECKKIFYHLSSLSRHLRTHAGEKPYECNQCEKSFYQKPHLTEH-QKTHTGEKPFECTECGKFFYVKAYLMVHQKTHTGEKPYECKECGKAFSQKSHLTVHQ-RMH 280 HSP 10 Score: 94.3597 bits (233), Expect = 6.412e-20 Identity = 54/143 (37.76%), Postives = 78/143 (54.55%), Query Frame = 1
Query: 2782 FHCEKCDSLFTSNSDLRRHVKIVHDKIKRYQCDDCDKTYALKGDLNRHTNAVHKGIKPYQCNVCEMSFARKAHLTNHQMVHTGIRRFQCNECGQLTNDKFHLKKHQMTHSREKKFECKECGKSFALQCYLKTHQTITHSTNKD 3210
+ C++C F S L H + H K ++C+ C KT+ K DL +H H G KPY+C C SFA + L HQ HTG + + C ECG+ + K H HQ H+ EK +EC+ECG++F + L HQ TH+ ++
Sbjct: 314 YECKECRKCFYQKSALTVHQR-THTGEKPFECNKCGKTFYYKSDLTKHQRK-HTGEKPYECTECGKSFAVNSVLRLHQRTHTGEKPYACKECGKSFSQKSHFIIHQRKHTGEKPYECQECGETFIQKSQLTAHQK-THTKKRN 453 HSP 11 Score: 94.3597 bits (233), Expect = 6.770e-20 Identity = 59/161 (36.65%), Postives = 87/161 (54.04%), Query Frame = 1
Query: 2812 TSNSDLRRHVKIVHDKIKRYQCDDCDKTYALKGDLNRHTNAVHKGIKPYQCNVCEMSFARKAHLTNHQMVHTGIRRFQCNECGQLTNDKFHLKKHQMTHSREKKFECKECGKSFALQCYLKTHQTITHSTNKDFQCKECEKSFACKRYLVKHQRIHKTKEP 3294
+ N +L +H K H K +C +C K + K L H + KG K Y C+ C SF++ L HQ +HT + ++C EC ++ L +H TH+ EK +EC +C KSF + +L HQ TH+ K F+C EC K F K YL+ HQ+ H ++P
Sbjct: 100 SRNGELTKHQK-THTTEKACECKECGKFFCQKSALIVHQHTHSKG-KSYDCDKCGKSFSKNEDLIRHQKIHTRDKTYECKECKKIFYHLSSLSRHLRTHAGEKPYECNQCEKSFYQKPHLTEHQK-THTGEKPFECTECGKFFYVKAYLMVHQKTHTGEKP 257 HSP 12 Score: 82.8037 bits (203), Expect = 3.636e-16 Identity = 45/116 (38.79%), Postives = 63/116 (54.31%), Query Frame = 1
Query: 2782 FHCEKCDSLFTSNSDLRRHVKIVHDKIKRYQCDDCDKTYALKGDLNRHTNAVHKGIKPYQCNVCEMSFARKAHLTNHQMVHTGIRRFQCNECGQLTNDKFHLKKHQMTHSREKKFE 3129
F C KC F SDL +H + H K Y+C +C K++A+ L H H G KPY C C SF++K+H HQ HTG + ++C ECG+ K L HQ TH++++ E
Sbjct: 342 FECNKCGKTFYYKSDLTKHQR-KHTGEKPYECTECGKSFAVNSVLRLH-QRTHTGEKPYACKECGKSFSQKSHFIIHQRKHTGEKPYECQECGETFIQKSQLTAHQKTHTKKRNAE 455 The following BLAST results are available for this feature:
BLAST of TCONS_00070605 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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