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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070595 ID=TCONS_00070595|Name=TCONS_00070595|organism=Clytia hemisphaerica|type=transcript|length=1668bpRun BLAST on NCBI transcript from alignment at scaffold_57:6713..8380+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070595 ID=TCONS_00070595|Name=TCONS_00070595|organism=Clytia hemisphaerica|type=transcript|length=1668bp|location=Sequence derived from alignment at scaffold_57:6713..8380+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00070595 vs. Swiss-Prot (Human)
Match: OZF (Zinc finger protein OZF OS=Homo sapiens GN=ZNF146 PE=1 SV=2) HSP 1 Score: 194.126 bits (492), Expect = 1.732e-56 Identity = 113/250 (45.20%), Postives = 148/250 (59.20%), Query Frame = 1
Query: 478 EETFTCDVCDKSFPSRSKLKRHGYTHTRVKRFVCSICHKTFNQSYHLNVHMNSHTGIKPYECKECGKFFRQKINLKRHTATHEGIKPFKCDICDKTYALKVDLNRHLKTHTDVKSYGCGVCGKTFARKCNLTQHLGTHXXXXXXXXXXXXXXXAQKAHLERHINNHKGIKPFKCDICDKMFAVKADISIHLKTHADVKPHGCGVCGKTFSQKSNLTHHLTTHENEKKFECKECGKRYRWKRDFEKHMFTH 1227
E F C VC K F +S L H + HTR K F C+ C K F+Q ++ H N+HTG K +EC ECGK F QK NL H H G KPF+C C K + K +L RH +THT K + C CGKTF+ K NLT+H H EK F+C ECG F QK +L +H N H G KP++C+ C K F+ + + +H++ H+ KP+ C VCGK FSQ S+LT H+ +H EK + C ECGK + H+ H
Sbjct: 13 ENPFACKVCGKVFSHKSNLTEHEHFHTREKPFECNECGKAFSQKQYVIKHQNTHTGEKLFECNECGKSFSQKENLLTHQKIHTGEKPFECKDCGKAFIQKSNLIRHQRTHTGEKPFVCKECGKTFSGKSNLTEHEKIHIGEKPFKCSECGTAFGQKKYLIKHQNIHTGEKPYECNECGKAFSQRTSLIVHVRIHSGDKPYECNVCGKAFSQSSSLTVHVRSHTGEKPYGCNECGKAFSQFSTLALHLRIH 262 HSP 2 Score: 185.652 bits (470), Expect = 2.122e-53 Identity = 107/250 (42.80%), Postives = 147/250 (58.80%), Query Frame = 1
Query: 478 EETFTCDVCDKSFPSRSKLKRHGYTHTRVKRFVCSICHKTFNQSYHLNVHMNSHTGIKPYECKECGKFFRQKINLKRHTATHEGIKPFKCDICDKTYALKVDLNRHLKTHTDVKSYGCGVCGKTFARKCNLTQHLGTHXXXXXXXXXXXXXXXAQKAHLERHINNHKGIKPFKCDICDKMFAVKADISIHLKTHADVKPHGCGVCGKTFSQKSNLTHHLTTHENEKKFECKECGKRYRWKRDFEKHMFTH 1227
E+ F C+ C K+F + + +H THT K F C+ C K+F+Q +L H HTG KP+ECK+CGK F QK NL RH TH G KPF C C KT++ K +L H K H K + C CG F +K L +H H EK +EC ECGK F+Q+ L H+ H G KP++C++C K F+ + +++H+++H KP+GC CGK FSQ S L HL H +K ++C ECGK + K +H H
Sbjct: 41 EKPFECNECGKAFSQKQYVIKHQNTHTGEKLFECNECGKSFSQKENLLTHQKIHTGEKPFECKDCGKAFIQKSNLIRHQRTHTGEKPFVCKECGKTFSGKSNLTEHEKIHIGEKPFKCSECGTAFGQKKYLIKHQNIHTGEKPYECNECGKAFSQRTSLIVHVRIHSGDKPYECNVCGKAFSQSSSLTVHVRSHTGEKPYGCNECGKAFSQFSTLALHLRIHTGKKPYQCSECGKAFSQKSHHIRHQKIH 290 HSP 3 Score: 129.798 bits (325), Expect = 1.849e-33 Identity = 84/197 (42.64%), Postives = 109/197 (55.33%), Query Frame = 1
Query: 637 HTGIKPYECKECGKFFRQKINLKRHTATHEGIKPFKCDICDKTYALKVDLNRHLKTHTDVKSYGCGVCGKTFARKCNLTQHLGTHXXXXXXXXXXXXXXXAQKAHLERHINNHKGIKPFKCDICDKMFAVKADISIHLKTHADVKPHGCGVCGKTFSQKSNLTHHLTTHENEKKFECKECGKRYRWKRDFEKHMFTH 1227
++G P+ CK CGK F K NL H H KPF+C+ C K ++ K + +H THT K + C CGK+F++K NL H H EK FECK+CGK F QK++L RH H G KPF C C K F+ K++++ H K H KP C CG F QK L H H EK +EC ECGK + + H+ H
Sbjct: 10 YSGENPFACKVCGKVFSHKSNLTEHEHFHTREKPFECNECGKAFSQKQYVIKHQNTHTGEKLFECNECGKSFSQKENLLTHQKIHTGEKPFECKDCGKAFIQKSNLIRHQRTHTGEKPFVCKECGKTFSGKSNLTEHEKIHIGEKPFKCSECGTAFGQKKYLIKHQNIHTGEKPYECNECGKAFSQRTSLIVHVRIH 206 HSP 4 Score: 92.8189 bits (229), Expect = 1.123e-20 Identity = 48/111 (43.24%), Postives = 63/111 (56.76%), Query Frame = 1
Query: 478 EETFTCDVCDKSFPSRSKLKRHGYTHTRVKRFVCSICHKTFNQSYHLNVHMNSHTGIKPYECKECGKFFRQKINLKRHTATHEGIKPFKCDICDKTYALKVDLNRHLKTHT 810
E+ + C+ C K+F R+ L H H+ K + C++C K F+QS L VH+ SHTG KPY C ECGK F Q L H H G KP++C C K ++ K RH K HT
Sbjct: 181 EKPYECNECGKAFSQRTSLIVHVRIHSGDKPYECNVCGKAFSQSSSLTVHVRSHTGEKPYGCNECGKAFSQFSTLALHLRIHTGKKPYQCSECGKAFSQKSHHIRHQKIHT 291 The following BLAST results are available for this feature:
BLAST of TCONS_00070595 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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