TCONS_00070591 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070591
Unique NameTCONS_00070591
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length651

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070591 ID=TCONS_00070591|Name=TCONS_00070591|organism=Clytia hemisphaerica|type=transcript|length=651bp
ATAAAAAATGGAAATGACGTCGCTTAATTTCTTTGATGAAGAACAAAAGA
AGTAGCGAAGATCACGTACAAAAGCGAATACAGTTGTTTATAAGTTGATN
GAACAAAAGAAGTAGCGAAGATCACGTACAAAAGCGTACATACAGTTGTT
TATAAGTTGATATAAAATACTTACCAAAATTTGGAATACGAGGAATCATT
CTATCGTGTTCTCAAAATCAAGAAGTCTGATGGGACCTCCACCTTCTTTA
CTGATACTCGTCATGATACTTGGCAAGCGAAAACAACTCTTTTATATACC
TAGCGGAGGTTACTAAAAGATCAGTCAGGAAGCTGCACTGCACAATTTTT
ATGCCAAAAACAATTCATCGTTTTGTTACTGATTTCAATGTGTTGCTATC
TTTGAAAGAGCTTCATCCGAAAGAACAAAGGGTCGAATATTGACCCTCCC
TGATCGGACGTATCTCGGTCTAAATTCGGACATTTTGATTTGATCAAAAT
TGTAGATTCCCAGGGCGTAGGTGTATAGTGTATAAAAAACACGTGGTTGA
TTTTACCTTGCACTTTTGTCTCACTGTGACTTTGTGTCTCGTTTCCAAAC
GATCTCTTGGTCCCAGGCTCCATACATTATGCAAGTTATAtcgaagaaaa
g
Run BLAST on NCBI

transcript from alignment at scaffold_56:838762..839412

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070591 ID=TCONS_00070591|Name=TCONS_00070591|organism=Clytia hemisphaerica|type=transcript|length=651bp|location=Sequence derived from alignment at scaffold_56:838762..839412 (Clytia hemisphaerica)
cttttcttcgaTATAACTTGCATAATGTATGGAGCCTGGGACCAAGAGAT
CGTTTGGAAACGAGACACAAAGTCACAGTGAGACAAAAGTGCAAGGTAAA
ATCAACCACGTGTTTTTTATACACTATACACCTACGCCCTGGGAATCTAC
AATTTTGATCAAATCAAAATGTCCGAATTTAGACCGAGATACGTCCGATC
AGGGAGGGTCAATATTCGACCCTTTGTTCTTTCGGATGAAGCTCTTTCAA
AGATAGCAACACATTGAAATCAGTAACAAAACGATGAATTGTTTTTGGCA
TAAAAATTGTGCAGTGCAGCTTCCTGACTGATCTTTTAGTAACCTCCGCT
AGGTATATAAAAGAGTTGTTTTCGCTTGCCAAGTATCATGACGAGTATCA
GTAAAGAAGGTGGAGGTCCCATCAGACTTCTTGATTTTGAGAACACGATA
GAATGATTCCTCGTATTCCAAATTTTGGTAAGTATTTTATATCAACTTAT
AAACAACTGTATGTACGCTTTTGTACGTGATCTTCGCTACTTCTTTTGTT
CNATCAACTTATAAACAACTGTATTCGCTTTTGTACGTGATCTTCGCTAC
TTCTTTTGTTCTTCATCAAAGAAATTAAGCGACGTCATTTCCATTTTTTA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043932XLOC_043932Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070591-exon-scaffold_56-1491911889:838762..839412TCONS_00070591-exon-scaffold_56-1491911889:838762..839412Clytia hemisphaericaexon
TCONS_00070591-exon-scaffold_56-1510915933:838762..839412TCONS_00070591-exon-scaffold_56-1510915933:838762..839412Clytia hemisphaericaexon
TCONS_00070591-exon-scaffold_56-1575043694:838762..839412TCONS_00070591-exon-scaffold_56-1575043694:838762..839412Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:838762..839412 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.240799	0.156545	0.181763	0.355654	0.649462	0.171071	0.515976	0.57966	0.405834	0	0	0.160371	0.320296	0.110877	0.0911558	0.391297	0.482045	0.494081	0.17065	0.178573	0	0.113561	0.368127	0.585692	1.2065	1.30751	0.110061	0.11746	0	0.272304
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070591 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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