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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070584 ID=TCONS_00070584|Name=TCONS_00070584|organism=Clytia hemisphaerica|type=transcript|length=1267bp
aaaagaacaaattgcttttcctggatttttttccgcttctccgcaccgga
aaatcagcgaaaaataTGATGTGGGCGGGTGACGCTGTAACGATCTTGTT
CTATATTTTTAGACTAGACCTATAATAAAGAGACTTAATATATATGATAT
GATACTGGCTTGTGTCGCTTTTACACTGGCAACGAAGAGACTATTGAAAC
AAGATACATATAGTGATACACACAAGACCACTAGCTGAAACTGGACACAA
ACACAACACACTGACAGACTTGATCCAGAATAAAGACTTGGACGTCTTAC
CAAAAGCTCAGTCATACCAGGTTTGCCCTGGACCTTCGAGGTAAGACTAT
TCCTTACTTTATTACCATACTCTATTTGACTGATCAATCACTGAATCAAG
ACGCTGCCAACATAGCACAGGAGACGACCTCACAAGTCACGTGatcaagg
aaaagaagaaagacaCGTCATAGTCTTACTGAAACTTTCATCACACCAGG
TGTGCCCTGGTCGTTGTAGGTAAGACCTTTCCTTTTCCTGTCTAATACGA
ACAACGCAGTTCAAGATGAATTTCAGTCCTGAACAATTCCAGACACTTAT
GGCAGCTATCACTGGCGGTCAGCTACAGCAAGCAGCTCCTGCTGCGGCAG
CTGCAACACCACCAAAGAATGATCCATCCGCACTTGGGCCGATACGACAA
TGCGGCCTAGGCACTGACAAAATGCAGAAGCTCATTCTCTTTAACGAATG
GCTTGATGATGCAGAAAACAGGATGGACTACATTGGTGTAACAGTAGACA
AAGAAAAGATCATCCTCCTGAAAACTTGGGGAGGACCAGAGATGGTTGAG
TTGATTCGTGCAGAGAGATCACACCTCAACACAGGAGCCCGAGCAAACGA
AGAAGGTGCACAAGCAAATGGGGAAGTTGCAGAAGCAAACGCAGAAGCTG
CACCCACCTACATGCAGACTATTGAACGGCTACGTTACTATCTGAGACGT
ATGGTCAATCGAACAATGGCCATGCACCAGCTTCTGGGGACCAAACAAGG
AACACGAACGTGGGGTGACTTCCTTCTAGATCTCGAAAAGAAGGCCAAGT
CCCTGAACTTTGACAACAAACCTTACACCACAGAGGAAGCTATAAAGGAT
GCTGCCATATTTGGCATGAATGATGTCAGCCTGAGAGAGAAGGCGCTTGC
GGAGGATCCAAACCTAGAGAAACTTTCCAGATGGGGCCAAGCACGAGAAG
CAGGCCGAGACGACGCC Run BLAST on NCBI protein sequence of TCONS_00070584-protein >TCONS_00070584-protein ID=TCONS_00070584-protein|Name=TCONS_00070584-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MNFSPEQFQTLMAAITGGQLQQAAPAAAAATPPKNDPSALGPIRQCGLGT
DKMQKLILFNEWLDDAENRMDYIGVTVDKEKIILLKTWGGPEMVELIRAE
RSHLNTGARANEEGAQANGEVAEANAEAAPTYMQTIERLRYYLRRMVNRT
MAMHQLLGTKQGTRTWGDFLLDLEKKAKSLNFDNKPYTTEEAIKDAAIFG
MNDVSLREKALAEDPNLEKLSRWGQAREAGRDDA Run BLAST on NCBI transcript from alignment at scaffold_56:289134..290400 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070584 ID=TCONS_00070584|Name=TCONS_00070584|organism=Clytia hemisphaerica|type=transcript|length=1267bp|location=Sequence derived from alignment at scaffold_56:289134..290400 (Clytia hemisphaerica)
GGCGTCGTCTCGGCCTGCTTCTCGTGCTTGGCCCCATCTGGAAAGTTTCT
CTAGGTTTGGATCCTCCGCAAGCGCCTTCTCTCTCAGGCTGACATCATTC
ATGCCAAATATGGCAGCATCCTTTATAGCTTCCTCTGTGGTGTAAGGTTT
GTTGTCAAAGTTCAGGGACTTGGCCTTCTTTTCGAGATCTAGAAGGAAGT
CACCCCACGTTCGTGTTCCTTGTTTGGTCCCCAGAAGCTGGTGCATGGCC
ATTGTTCGATTGACCATACGTCTCAGATAGTAACGTAGCCGTTCAATAGT
CTGCATGTAGGTGGGTGCAGCTTCTGCGTTTGCTTCTGCAACTTCCCCAT
TTGCTTGTGCACCTTCTTCGTTTGCTCGGGCTCCTGTGTTGAGGTGTGAT
CTCTCTGCACGAATCAACTCAACCATCTCTGGTCCTCCCCAAGTTTTCAG
GAGGATGATCTTTTCTTTGTCTACTGTTACACCAATGTAGTCCATCCTGT
TTTCTGCATCATCAAGCCATTCGTTAAAGAGAATGAGCTTCTGCATTTTG
TCAGTGCCTAGGCCGCATTGTCGTATCGGCCCAAGTGCGGATGGATCATT
CTTTGGTGGTGTTGCAGCTGCCGCAGCAGGAGCTGCTTGCTGTAGCTGAC
CGCCAGTGATAGCTGCCATAAGTGTCTGGAATTGTTCAGGACTGAAATTC
ATCTTGAACTGCGTTGTTCGTATTAGACAGGAAAAGGAAAGGTCTTACCT
ACAACGACCAGGGCACACCTGGTGTGATGAAAGTTTCAGTAAGACTATGA
CGtgtctttcttcttttccttgatCACGTGACTTGTGAGGTCGTCTCCTG
TGCTATGTTGGCAGCGTCTTGATTCAGTGATTGATCAGTCAAATAGAGTA
TGGTAATAAAGTAAGGAATAGTCTTACCTCGAAGGTCCAGGGCAAACCTG
GTATGACTGAGCTTTTGGTAAGACGTCCAAGTCTTTATTCTGGATCAAGT
CTGTCAGTGTGTTGTGTTTGTGTCCAGTTTCAGCTAGTGGTCTTGTGTGT
ATCACTATATGTATCTTGTTTCAATAGTCTCTTCGTTGCCAGTGTAAAAG
CGACACAAGCCAGTATCATATCATATATATTAAGTCTCTTTATTATAGGT
CTAGTCTAAAAATATAGAACAAGATCGTTACAGCGTCACCCGCCCACATC
Atatttttcgctgattttccggtgcggagaagcggaaaaaaatccaggaa
aagcaatttgttctttt Coding sequence (CDS) from alignment at scaffold_56:289134..290400 >TCONS_00070584 ID=TCONS_00070584|Name=TCONS_00070584|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_56:289134..290400 (Clytia hemisphaerica)
GGCGTCGTCTCGGCCTGCTTCTCGTGCTTGGCCCCATCTGGAAAGTTTCT
CTAGGTTTGGATCCTCCGCAAGCGCCTTCTCTCTCAGGCTGACATCATTC
ATGCCAAATATGGCAGCATCCTTTATAGCTTCCTCTGTGGTGTAAGGTTT
GTTGTCAAAGTTCAGGGACTTGGCCTTCTTTTCGAGATCTAGAAGGAAGT
CACCCCACGTTCGTGTTCCTTGTTTGGTCCCCAGAAGCTGGTGCATGGCC
ATTGTTCGATTGACCATACGTCTCAGATAGTAACGTAGCCGTTCAATAGT
CTGCATGTAGGTGGGTGCAGCTTCTGCGTTTGCTTCTGCAACTTCCCCAT
TTGCTTGTGCACCTTCTTCGTTTGCTCGGGCTCCTGTGTTGAGGTGTGAT
CTCTCTGCACGAATCAACTCAACCATCTCTGGTCCTCCCCAAGTTTTCAG
GAGGATGATCTTTTCTTTGTCTACTGTTACACCAATGTAGTCCATCCTGT
TTTCTGCATCATCAAGCCATTCGTTAAAGAGAATGAGCTTCTGCATTTTG
TCAGTGCCTAGGCCGCATTGTCGTATCGGCCCAAGTGCGGATGGATCATT
CTTTGGTGGTGTTGCAGCTGCCGCAGCAGGAGCTGCTTGCTGTAGCTGAC
CGCCAGTGATAGCTGCCATAAGTGTCTGGAATTGTTCAGGACTGAAATTC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070584-exon-scaffold_56-1491911889:289134..290400 | TCONS_00070584-exon-scaffold_56-1491911889:289134..290400 | Clytia hemisphaerica | exon |
| TCONS_00070584-exon-scaffold_56-1510915933:289134..290400 | TCONS_00070584-exon-scaffold_56-1510915933:289134..290400 | Clytia hemisphaerica | exon |
| TCONS_00070584-exon-scaffold_56-1575043694:289134..290400 | TCONS_00070584-exon-scaffold_56-1575043694:289134..290400 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_56 | supercontig | scaffold_56:289134..290400 . |
Blast
The following BLAST results are available for this feature:
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