TCONS_00070572 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00070572
Unique Name	TCONS_00070572
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	690

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_56:879130..882700-

transcript sequence

>TCONS_00070572 ID=TCONS_00070572|Name=TCONS_00070572|organism=Clytia hemisphaerica|type=transcript|length=690bp
attattttcttaatttattgtttcttttttaaagattaataacatatgaa
aaataaacaaataaagatGGAAGAAGAACAATGAGTGGCAGAAGAGGAGG
AGGTTACAGTTCAGAGTTCGAAGAGCCTTCTTCATCCTCTGGAAGTAAAC
GGAAAAGTTCATCATGGCGGAATGATTCAATCAGTGAAAAAGTGAAGATT
GCCAGAGTTGACCATGGTGCATCAAGACCTGCAAGATCAAGTTATATTGA
AGAATATGAAAAAGAAGAACGGAAAAGCCATTTCGCCAAATTCTTATCTT
TGAATGCATATCAACGTCATCAGAAGTTGGTCGGAGATTACCTTCGTTAC
TATGGAGGGAAACCGGAACATTTTAAAAGAGACAGTTCAAAAGACAAAAC
AGATTATGATGTGCTACGAGAAAACCACAAATTTATTTGGGATGACGAAG
AAGAAACAGGAGACTGgggTAAGCAAATGGCGAAGAGATATTATGACAAG
CTATTCAAAGAATACTGCATTTGCGACTTGAGTTGTTATAAAGAAAACAA
GTTTGCAATGCGATGGAGAGTCGAGAAGGAAGTAACGAGTGGAAAAGGTG
AGAGGTTTAAAGGGATAGATATTTTAATAATGTTGGGTTAAACCATGCTA
ACGAATGATTAAATGCTTTGTGATTACGTCATAAAAGCTG

Run BLAST on NCBI

transcript from alignment at scaffold_56:879130..882700-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00070572 ID=TCONS_00070572|Name=TCONS_00070572|organism=Clytia hemisphaerica|type=transcript|length=3571bp|location=Sequence derived from alignment at scaffold_56:879130..882700- (Clytia hemisphaerica)
ATTATTTTCTTAATTTATTGTTTCTTTTTTAAAGATTAATAACATATGAA
AAATAAACAAATAAAGATGGAAGAAGAACAATGAGTGGCAGAAGAGGAGG
AGGTTACAGTTCAGAGTTCGAAGAGCCTTCTTCATCCTCTGGAAGTAAAC
GGAAAAGGTTCCGATTTCTTTTTCAAAAATGTACATCTATTTTGCACACA
AATACTCTTTTGACCAATATTTCAGCATCGGATTACACAGTTACAGGAAT
CACTACAAACAACACAATAACATCTGAAATGTTTTAAGATTGCAAGAAAG
GAATCTCTCTAATTACTTTCTAACTTGAACTATCATGATGCCTCTGTATC
AAATAGTTTATTTTGTTGAGTTAATTTCATGGTTCGTCCTTTGCTTTCTC
CTTTAGTTCATCATGGCGGAATGATTCAATCAGTGAAAAAGTGAAGATTG
CCAGAGTTGACCATGGTGCATCAAGACCTGCAAGATCAAGTTATATTGAA
GAATATGAAAAGTTTGTATTCAAAATTTTATGACTCTAAAGGCCGGTATC
CACTTTCGCGCGAAATGGGCGAAATGGGCGAAACCTTTTTTGCCTAAAGA
AACGATTACATCATAAAATGTTTTCGCGCGAACAAAAAAAAAGTTGAAGG
AAGTTCACTGTCTTTGTTGAAACTTATCAACACTGATATTCACAATTTCA
TGACTCTAATTTGTTTTTCTGTTAAATGTTTATTGTGATTTTTCCTGATT
TGAACTTGTGACTCCAATTGCTTGTTTACAAATTCTATCCTCCTTTGTGT
TGCCAGCTATCTTGACAAATCTTGGCCGAAGATCTCCAAAACTTGATAGC
CAATCATCACTTCTAAGTAGCATGCCTGGTTTTAGCCATTCCCATTAAAT
GTGCATTGTGTTGTTCCTTTTTCAGAGAAGAACGGAAAAGCCATTTCGCC
AAATTCTTATCTTTGAATGCAGTAAGTAAATTCTGCTTTGTGTCCTGATT
TAAAATGACATTCAACTACAGTACTTCCAGAAATGAAGAGAAGGATCTTT
TAGGTTTTCTTGGTCATACTTGTGTAGTGGCTTTTTTCAATGCATGTTTC
AAATGAAGACTTTTTGGCTTTACTACAATCATGGTTGAAATATATTGAGA
ATTCCGGTTATTTTAACGTTTTTCAAGATTTAAAGTTCCGGCGGGAAAGT
CTATTTCGGGCTATCTCTTTGATTTAATCGAATATTTTAATTTGGGAGGG
GTTGGCAGACTTACAGGCTATATTCTGGGCCTTATTGGACTATTTTTGAA
CTTTTGAATCCTCATATCCTAAGGTCCTAACTCTAGCGTTAAAACTCAGA
GCTAAAACTCTACACTTCTAACCTACTTTAGAGCACTTTACAAATCGATT
GTGGTTACAAAACTTCCTGGGGAATTTACCTTTTTTCTCAGATATTATTG
ATTGTAACTGGTATTAGAGGCAAGGTTTTACTTTTCGCACTTAATGTTTT
CCTGTACTTCCTCTTTCTTTACATATTCTTGTAAATTTTGTGCTTGTTTT
TTTTTTCTTATTCCAGTATCAACGTCATCAGAAGTTGGTCGGAGATTACC
TTCGTTACTATGGAGGGAAACCGGAACATTTTAAAAGAGACAGGTTATTT
ATTCATTATATGTACCATTACAATGTNACTATGGAGGGAAGCCGGAACAT
TTTAAAAGAGACAGGTTATTTATTCATTATATGTATACCATTACAATGTT
TTCTGACATTTCATCACGGACCCAATGAAATAGCTGATTGGTTTTAAGTG
ACGTAAAATCAGTCAATACGTCTCTTTCAACCAATCATCTTTTGGGTCCG
TGGAAGACATTGCAATGGTGCATATCATGAATTACCTTTACCATTTTTCG
TTTGAACTCACTTTCATTGTTCTCTTTTCTTCATTTCCATTTCTATCTTC
TAGGGCATTGCTCATTATTCATGATATTCACGACGTAATCTTTTCTACGG
AAACACCCTGATTTTTGCCAGTAGTGGAAATTTAAAAACCATTTTTCTCC
AGCTTGAATTTGCCACTGCTTGCAAAATCAGGGTGTTTCCGCAGAAAACA
TTACATCATAAAATGCAACTTTCAGTTTTATCAAGAAGCTTAATTAAAAG
TTTCTTGGTTATATCATCCTTGAAAAAGCCAACCGTCATAATGATGACAC
CCTCTCACTGTTAACTTCTCAATATCTTTCCAGTTCAAAAGACAAAACAG
ATTATGATGTGCTACGAGAAAACCACAAGTAAGTCTATACAACGAAAACT
TTTCTTGGAAGGATTGGGGCCCACTTTTTTGGTTATGAAAATTGACTTTC
CTTTCCGTTTCGTAGACTAGAATAGTATTCATTTTAATCAAACAATTTCT
CTTTGTTTATTGCAGTATTATAGTATTGTAACTTTTCATTTTTCTGTACA
GATTTATTTGGGATGACGAAGAAGAAACAGGAGACTGGTAACTAATTTAA
CTCTTTGGTTAAATGATTGAGGGGCTGTGTATACAAACGAAGCGTAAAAG
GGAAGGNCCTTAAATGATTGAGAGACTGTGCATACAAACAAAGTGTAAAA
GGGGAAATGGTTTGATAGTCAGGCTTTGACGAGAGGAAGAACCTATGACA
TGGGACCAAAATGCCAAATAAAGATATTCTATACATACTATACCATGCCA
TGTGAGGGGAATTGGGTACCATTACTCTGATACAAGAGTGTGGGTAGATT
AGACAGACATTGTGACGTGCCGTGGCACTCATAAGGTTCGGCCTCGCGTG
AGCATCGCTCTCCCAGTGTCGTTCGAGTGTCATGGTATACGCCATGGCTT
GGCAGCTCGCCGACTTTCATCATCAAATTCATTGATAGCAATTCCCACCA
TCAAGCATGATTCGATCGTCAATAAAACTGATTTCTGCAACCGGAACTTT
CTATATCTTTTTTCCCTTCTCCCTTCCCTCTCCCCATCAACAATCAATGA
TGAAATTTAACGCGTTATGCCTTTTCGCTAAACATTATATTTTCTAACGG
ATTGTTTCCGTTTTTCTCCTTATTGCTATCTAACTTTCATCATCAGGTAG
GTCCATTCAGCAACTAGCTTGTTTGTCTTTTTTTGTGCTCCATTTTTTTA
TTTTGTAATTTATAAGTAAAACTGCTAGATATCGGTCACGAAAATCTTGA
GTGTTTTTATTTTATTTTTAAGGGGTAAGCAAATGGCGAAGAGATATTAT
GACAAGCTATTCAAAGAATACTGCATTTGCGACTTGAGTTGTTATAAAGA
AAACAAGGTACCGTTGTTAAAAACACTATTTGGTTTTAATGAAAAAGGAG
TTATCTATAGTATCTGAAAAATTGATACACCTTTTTGAGACGATTCCAAA
ACTTAAGCTTTAACTTTCTTTTCTACGTTCAGTTTGCAATGCGATGGAGA
GTCGAGAAGGAAGTAACGAGTGGAAAAGGTGAGAGGTTTAAAGGGATAGA
TATTTTAATAATGTTGGGTTAAACCATGCTAACGAATGATTAAATGCTTT
GTGATTACGTCATAAAAGCTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043915	XLOC_043915	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_56	supercontig	scaffold_56:879130..882700 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
39.0255	41.5157	34.8138	39.2998	31.6306	26.4097	36.4139	40.571	22.9206	22.2191	13.1794	17.3272	13.3706	17.5109	14.1018	20.1779	39.0624	32.7576	15.0855	11.8394	20.5811	21.7506	25.7628	16.0257	25.8163	25.6554	24.3284	17.3058	13.1258	18.7224

Blast

[Close]

BLAST of TCONS_00070572 vs. Swiss-Prot (Human)
Match: F10C1 (Protein FRA10AC1 OS=Homo sapiens GN=FRA10AC1 PE=1 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 6.532e-42
Identity = 73/123 (59.35%), Postives = 92/123 (74.80%), Query Frame = 3

Query:  249 EEYEKEERKSHFAKFLSLNAYQRHQKLVGDYLRYYGGKPEHFKRDSSKDKTDYDVLRENHKFIWDDEEETG-DWGKQMAKRYYDKLFKEYCICDLSCYKENKFAMRWRVEKEVTSGKGERFKG 614
            E  ++EE ++     ++++AYQRH K V DY+ YYGGK E FKR    DKTD DV+RENH+F+W++E+E    W K++AK+YYDKLFKEYCI DLS YKENKF  RWRVEKEV SGKG+ F G
Sbjct:   54 ELLDREEARNRRFHLIAMDAYQRHTKFVNDYILYYGGKKEDFKRLGENDKTDLDVIRENHRFLWNEEDEMDMTWEKRLAKKYYDKLFKEYCIADLSKYKENKFGFRWRVEKEVISGKGQFFCG 176

The following BLAST results are available for this feature:

BLAST of TCONS_00070572 vs. Swiss-Prot (Human)

BLAST of TCONS_00070572 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
F10C1	6.532e-42	59.35	Protein FRA10AC1 OS=Homo sapiens GN=FRA10AC1 PE=1 ...	[more]

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TCONS_00070572 (transcript) - C. hemisphaerica