TCONS_00070570 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070570
Unique NameTCONS_00070570
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length952

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070570 ID=TCONS_00070570|Name=TCONS_00070570|organism=Clytia hemisphaerica|type=transcript|length=952bp
tgtttttaggtTAACTTTGGATACTTGGAGCATGGAGAAAAGAAGAACGC
TTTGGTGAAACTTCGTTTATGTCCTGATTGCTCTTACAAGCTGAACTATC
ACAAGAAACACAAGAAagcgaagaagaagaaatcgaaaaagaagaaaatc
aaagaacGTCGACGAGAGAAGAAAGAACGAAAGAAatcaagcaaaaagaa
aaagaagaggaaGAATTCTACGTCATCCATTGAAAGTGAAAGCGATGAGT
CAGCAAGTTCTGGTGACGAAGAACAACCTAAAAATTCGTCGACTTCAAAA
GAAAaggatgaagatgaagaagaagatgctTCGAATATTTGGAAGAAACC
TGTCAAAGAAGATGTCGAAAAAACAAgGGAGGAAGAATTTGATGAATACT
TGGACGATCTCTTTATGTAAAACAAGTTAGAAAAAAGTTCTTGGACAAGG
CTAAATTTATACGCGGATGAAGGCTAATGGAATGATATAAATCAATCGTG
TAGATACCCAAGCTTCAGGAGGTTTAGTTATGCACGAAGCTGTATGTGAC
GTCCAATTCTCTGGTAAGTCAAGTAAGATGCAACAAATATGTGAAAGAAC
AGTCAAGCCCAAAGACTTAGATTTCTGGGTAAGAGAAACCCTAATACTGA
AGTAAATTGTACTGCAAATTCTTTACTGTAACTGCCCAAAGTTACTAAGT
GAAAGACGAAGACACCTTTTACGATGATTGGGAGATGACTTGATGAATGA
TTGAAAGTTTGCCCGACTTATCTAAAATCCAGGTGGTCGTATGAATTGAA
CGGCTATATAAATACTTGTCAACactaaaaatcttaaaaaagaatACTTG
TTTTagtaataaaactttttttgtaaTAGTTGGTTAATGTAATATTTCAA
TTCGATGATTTTAAACCAAAAACTTATTATTGGAGATGATATCTTATGCT
AT
Run BLAST on NCBI

transcript from alignment at scaffold_56:872622..878114-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070570 ID=TCONS_00070570|Name=TCONS_00070570|organism=Clytia hemisphaerica|type=transcript|length=5493bp|location=Sequence derived from alignment at scaffold_56:872622..878114- (Clytia hemisphaerica)
TGTTTTTAGGTTAACTTTGGATACTTGGAGCATGGAGAAAAGAAGAACGC
TTTGGTGAAACTTCGTGAGTGACCGACGGTAGAATTTTCTTATAGTTGGA
GTTCATTCTTTTATATTTGATTTACATTCTCACTAAGTTATTTGATATTC
TTTTTACTTAGGTTTATGTCCTGATTGCTCTTACAAGCTGAACTATCACA
AGAAGTAAGTCATTTTGAATTTTTTCCCCTTATATACTATTATGGGTAAG
TAAATATAGGTTACGTATTTTTTAATAAATCTTAAGTCGATTGTCAACTT
GATAAGCCAGAGTCCGACCAAAATCACGTGAAAGGTTTAAAGTTTACGGT
GGCCGTGAGAGGACAGCGCGTTTTTTTTTCAATAGCGCGTTTTTTTTTCA
ACAGCGCGTTTTTCTTTCCCATGTTTTTTTGCTCTCATTATTTAGGTTTT
GAGTGCAGCATAAAGTAGGAAGGCTTTAAACATACAAAATGGTTTATTGT
ACTGAATGTGGACGGGTGTTAGATGACGATGGGGCAGTATTTTGTTCTCA
TTGTGGAAGCAAAACCTATTGTCGTCAGAGGAGATTAAGGCAAGACGTAA
CTGATGAACGTGAAATAATCGAGCATTATTTTAAAGAGGGCTTGTTGAAA
TATAAGCAAATCGTCCCCATGTTGAGGATTTACCATGGTATTGATATGAG
TGAAAGGACGCATTGAAACGTCGTTTAAAGACTTATAATCTATCACGAAG
TTTTACAGATATCACAATACCTGCTTTATCTGCTTTAATTTTACGTGAAA
TGGAAGGACCTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNGTGGTTCGTCTTTTCGAGATTTTTACAAAATCAACTTGAT
GATGTAAAACATGAATGGAACTCTCATTATATAAGAAAGTCACGACATGA
TACCATAGGAGGCATTCCGGATGTACTATTTTACGCTCCAGAGTCAGTCG
ATTTCGAAGACCGAAAAGTAAACCTAGACGATAATTTGATAGCTAACCTT
TTAAACGAAAGAAACATTCCCCAAGAAGCGACCTTAGCGGTTGAGGCTAA
CACAGGTGAAGAGTTAAATGACTTTTTTCAATATGTTATAGAATCAGAAA
AATTTTATATTTGCACCAAACAACTGGGCAGCGGCAAGAGAGTTATTTTT
GCAAATTATCAACAGATGTGTCTGATGACCTTTGAAATAAGTTTTATCTA
TGATACACAAGATTTATTATTTCTTTATTAAGTTTAAATATATCATAAAT
TTTCGAACTGAGTTACATGAACAGCTAGTGAAATTCGAAACCCCCGAAAC
TCCCGTCTTCGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCTGTTGAAAAAAAAACGCGCTATTGAA
AAAAAAACGCGCTGTTGAAAAAAAAACGCGCTGTTGAAAAAAAAAACGCG
CTGTTGAAAAAAAAAACGCGCTGTTGAAAAAAAAACGCGCTGTTGAAAAA
AAAAGCGCTGTCCTCTCTCGGCCACCGTAAAAGTTTAATCCTGAAATGCT
CTTTTTTCATTAAGACACAAGAAAGCGAAGAAGAAGAAATCGAAAAAGAA
GAAAATCAAAGAACGTCGACGAGAGAAGAAAGAACGAAAGAAATCAAGCA
AAAAGAAAAAGAAGAGGAAGAATTCTACGTCATCCATTGAAAGTGAAAGC
GATGAGTCAGCAAGTTCTGGTGACGAAGAACAACCTAGTGAGTGGAAAAC
CTTAATGATAATGTTTTAATTTGTAATGTTGAACAGGCTGGTTCCTTAAG
AAGTTCAGCAGAAAAAAGTTACCCTCGTGTAGACCAGATGTTGTGCGTCT
ATATCCCCTACTATAACCAATTCATTCACTTAAATCTCTGTTATCAGAGT
CAAATTATTATAAGATATGTCTTCTCTTCGTTTACTGCCACTTTTGTATG
AACAAATAATATTTGCAATTTTTCAACTGTAACTGGATTGTATTGTAATG
CCTTTGCAAATGTAAAGGAGCTCCCTGAAGCTCTTGGGCGGTATTTTGTC
TTATTGCACAAACACTTTTCAAAAGCAATGCGAAAAAAAAAAAGTTACAA
ATAGCGTTCCCTTTTGCAGAAAATTCGTCGACTTCAAAAGAAAAGGATGA
AGATGAAGAAGAAGATGCTTCGAATATTTGGAAGAAACCTGTCAAAGAAG
ATGTCGAAAAAACAAGGTCAAATTTCATTTTTACAACCTTATTTTACTGT
TATTGACAAATTTGACCCAGGAGCATAGTCAGAGGGCTTGTGTAGGGAAA
TTCTATAAGATTTAGTAAAATATTTTTCGTATTTTCATTATATAAAGATG
GTAAATAATATTGTCTTCTCTCTGCTATACCTGACAATCTCTATAACTAA
CTGGAAGGAATTGATTTCAAAATCCGCCCTCTAAATCACTCTTCTATGTT
GCCCCTTTGTATTGTGACAATACTATTTTGGTACCTTATCAACTTAGTAG
TGAATGATACATTTACTAAAGCTCTTGGAAAGTACATTATCATTAATAGT
GACCGTAGTGAAAAAGTAGAGCATTCGGTTACGGTGTGCAAATTTGTGGG
CTCAATCCCAAGACGGATCATACCAAAAGACTTCGTACAAAATTGTACTT
AGTGCTTCTCTGCTTGGTGCTCAGCAAGTAAGACAAGGATCAAGGATAAG
TGGAGTAATAGAGGGACATAGCATGGCGCCCTCCCTTGCCTTCGGGTTTA
ATAGCTATCGAAAGAGGAGCTTTTGGGTCGCCTCTGACTGCGGTCGCAAG
ATTTACTGTACTTATTTTGAACATATTGTAACCAAATCTTNGGTCGCCTC
CGACTGCGGTCGCAAGATTTACTGTACTTATTTTGAAGATACTGTAACCA
AATCTATTTCTCTCATAGGGAGGAAGAATTTGATGAATACTTGGACGATC
TCTTTATGTAAAACAAGTTAGAAAAAAGTTCTTGGACAAGGCTAAATTTA
TACGCGGATGAAGGCTAATGGAATGATATAAATCAATCGTGTAGATACCC
AAGCTTCAGGAGGTTTAGTTATGCACGAAGCTGTATGTGACGTCCAATTC
TCTGGTAAGTCAAGTAAGATGCAACAAATATGTGAAAGAACAGTCAAGCC
CAAAGACTTAGATTTCTGGGTAAGAGAAACCCTAATACTGAAGTAAATTG
TACTGCAAATTCTTTACTGTAACTGCCCAAAGTTACTAAGTGAAAGACGA
AGACACCTTTTACGATGATTGGGAGATGACTTGATGAATGATTGAAAGTT
TGCCCGACTTATCTAAAATCCAGGTGGTCGTATGAATTGAACGGCTATAT
AAATACTTGTCAACACTAAAAATCTTAAAAAAGAATACTTGTTTTAGTAA
TAAAACTTTTTTTGTAATAGTTGGTTAATGTAATATTTCAATTCGATGAT
TTTAAACCAAAAACTTATTATTGGAGATGATATCTTATGCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043914XLOC_043914Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070570-exon-scaffold_56-1575043694:878051..878114TCONS_00070570-exon-scaffold_56-1575043694:878051..878114Clytia hemisphaericaexon
TCONS_00070570-exon-scaffold_56-1575043694:877911..877953TCONS_00070570-exon-scaffold_56-1575043694:877911..877953Clytia hemisphaericaexon
TCONS_00070570-exon-scaffold_56-1575043694:874378..874550TCONS_00070570-exon-scaffold_56-1575043694:874378..874550Clytia hemisphaericaexon
TCONS_00070570-exon-scaffold_56-1575043694:873899..873995TCONS_00070570-exon-scaffold_56-1575043694:873899..873995Clytia hemisphaericaexon
TCONS_00070570-exon-scaffold_56-1575043694:872622..873196TCONS_00070570-exon-scaffold_56-1575043694:872622..873196Clytia hemisphaericaexon
TCONS_00070570-exon-scaffold_56-1510915933:878051..878114TCONS_00070570-exon-scaffold_56-1510915933:878051..878114Clytia hemisphaericaexon
TCONS_00070570-exon-scaffold_56-1510915933:877911..877953TCONS_00070570-exon-scaffold_56-1510915933:877911..877953Clytia hemisphaericaexon
TCONS_00070570-exon-scaffold_56-1510915933:874378..874550TCONS_00070570-exon-scaffold_56-1510915933:874378..874550Clytia hemisphaericaexon
TCONS_00070570-exon-scaffold_56-1510915933:873899..873995TCONS_00070570-exon-scaffold_56-1510915933:873899..873995Clytia hemisphaericaexon
TCONS_00070570-exon-scaffold_56-1510915933:872622..873196TCONS_00070570-exon-scaffold_56-1510915933:872622..873196Clytia hemisphaericaexon
TCONS_00070570-exon-scaffold_56-1491911889:878051..878114TCONS_00070570-exon-scaffold_56-1491911889:878051..878114Clytia hemisphaericaexon
TCONS_00070570-exon-scaffold_56-1491911889:877911..877953TCONS_00070570-exon-scaffold_56-1491911889:877911..877953Clytia hemisphaericaexon
TCONS_00070570-exon-scaffold_56-1491911889:874378..874550TCONS_00070570-exon-scaffold_56-1491911889:874378..874550Clytia hemisphaericaexon
TCONS_00070570-exon-scaffold_56-1491911889:873899..873995TCONS_00070570-exon-scaffold_56-1491911889:873899..873995Clytia hemisphaericaexon
TCONS_00070570-exon-scaffold_56-1491911889:872622..873196TCONS_00070570-exon-scaffold_56-1491911889:872622..873196Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:872622..878114 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
40.1166	41.5447	42.4664	42.6608	17.6173	13.8515	20.0955	18.3157	16.1022	13.7807	14.0477	12.8619	10.5875	8.55949	16.2822	16.9946	23.8736	22.2064	8.24896	13.2269	14.1052	12.6725	24.9064	19.3564	11.4259	13.3224	8.32271	6.36354	18.0077	17.2733
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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