TCONS_00070570 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070570
Unique NameTCONS_00070570
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length952

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070570 ID=TCONS_00070570|Name=TCONS_00070570|organism=Clytia hemisphaerica|type=transcript|length=952bp
tgtttttaggtTAACTTTGGATACTTGGAGCATGGAGAAAAGAAGAACGC
TTTGGTGAAACTTCGTTTATGTCCTGATTGCTCTTACAAGCTGAACTATC
ACAAGAAACACAAGAAagcgaagaagaagaaatcgaaaaagaagaaaatc
aaagaacGTCGACGAGAGAAGAAAGAACGAAAGAAatcaagcaaaaagaa
aaagaagaggaaGAATTCTACGTCATCCATTGAAAGTGAAAGCGATGAGT
CAGCAAGTTCTGGTGACGAAGAACAACCTAAAAATTCGTCGACTTCAAAA
GAAAaggatgaagatgaagaagaagatgctTCGAATATTTGGAAGAAACC
TGTCAAAGAAGATGTCGAAAAAACAAgGGAGGAAGAATTTGATGAATACT
TGGACGATCTCTTTATGTAAAACAAGTTAGAAAAAAGTTCTTGGACAAGG
CTAAATTTATACGCGGATGAAGGCTAATGGAATGATATAAATCAATCGTG
TAGATACCCAAGCTTCAGGAGGTTTAGTTATGCACGAAGCTGTATGTGAC
GTCCAATTCTCTGGTAAGTCAAGTAAGATGCAACAAATATGTGAAAGAAC
AGTCAAGCCCAAAGACTTAGATTTCTGGGTAAGAGAAACCCTAATACTGA
AGTAAATTGTACTGCAAATTCTTTACTGTAACTGCCCAAAGTTACTAAGT
GAAAGACGAAGACACCTTTTACGATGATTGGGAGATGACTTGATGAATGA
TTGAAAGTTTGCCCGACTTATCTAAAATCCAGGTGGTCGTATGAATTGAA
CGGCTATATAAATACTTGTCAACactaaaaatcttaaaaaagaatACTTG
TTTTagtaataaaactttttttgtaaTAGTTGGTTAATGTAATATTTCAA
TTCGATGATTTTAAACCAAAAACTTATTATTGGAGATGATATCTTATGCT
AT
Run BLAST on NCBI

transcript from alignment at scaffold_56:872622..878114-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070570 ID=TCONS_00070570|Name=TCONS_00070570|organism=Clytia hemisphaerica|type=transcript|length=5493bp|location=Sequence derived from alignment at scaffold_56:872622..878114- (Clytia hemisphaerica)
TGTTTTTAGGTTAACTTTGGATACTTGGAGCATGGAGAAAAGAAGAACGC TTTGGTGAAACTTCGTGAGTGACCGACGGTAGAATTTTCTTATAGTTGGA GTTCATTCTTTTATATTTGATTTACATTCTCACTAAGTTATTTGATATTC TTTTTACTTAGGTTTATGTCCTGATTGCTCTTACAAGCTGAACTATCACA AGAAGTAAGTCATTTTGAATTTTTTCCCCTTATATACTATTATGGGTAAG TAAATATAGGTTACGTATTTTTTAATAAATCTTAAGTCGATTGTCAACTT GATAAGCCAGAGTCCGACCAAAATCACGTGAAAGGTTTAAAGTTTACGGT GGCCGTGAGAGGACAGCGCGTTTTTTTTTCAATAGCGCGTTTTTTTTTCA ACAGCGCGTTTTTCTTTCCCATGTTTTTTTGCTCTCATTATTTAGGTTTT GAGTGCAGCATAAAGTAGGAAGGCTTTAAACATACAAAATGGTTTATTGT ACTGAATGTGGACGGGTGTTAGATGACGATGGGGCAGTATTTTGTTCTCA TTGTGGAAGCAAAACCTATTGTCGTCAGAGGAGATTAAGGCAAGACGTAA CTGATGAACGTGAAATAATCGAGCATTATTTTAAAGAGGGCTTGTTGAAA TATAAGCAAATCGTCCCCATGTTGAGGATTTACCATGGTATTGATATGAG TGAAAGGACGCATTGAAACGTCGTTTAAAGACTTATAATCTATCACGAAG TTTTACAGATATCACAATACCTGCTTTATCTGCTTTAATTTTACGTGAAA TGGAAGGACCTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNGTGGTTCGTCTTTTCGAGATTTTTACAAAATCAACTTGAT GATGTAAAACATGAATGGAACTCTCATTATATAAGAAAGTCACGACATGA TACCATAGGAGGCATTCCGGATGTACTATTTTACGCTCCAGAGTCAGTCG ATTTCGAAGACCGAAAAGTAAACCTAGACGATAATTTGATAGCTAACCTT TTAAACGAAAGAAACATTCCCCAAGAAGCGACCTTAGCGGTTGAGGCTAA CACAGGTGAAGAGTTAAATGACTTTTTTCAATATGTTATAGAATCAGAAA AATTTTATATTTGCACCAAACAACTGGGCAGCGGCAAGAGAGTTATTTTT GCAAATTATCAACAGATGTGTCTGATGACCTTTGAAATAAGTTTTATCTA TGATACACAAGATTTATTATTTCTTTATTAAGTTTAAATATATCATAAAT TTTCGAACTGAGTTACATGAACAGCTAGTGAAATTCGAAACCCCCGAAAC TCCCGTCTTCGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNCTGTTGAAAAAAAAACGCGCTATTGAA AAAAAAACGCGCTGTTGAAAAAAAAACGCGCTGTTGAAAAAAAAAACGCG CTGTTGAAAAAAAAAACGCGCTGTTGAAAAAAAAACGCGCTGTTGAAAAA AAAAGCGCTGTCCTCTCTCGGCCACCGTAAAAGTTTAATCCTGAAATGCT CTTTTTTCATTAAGACACAAGAAAGCGAAGAAGAAGAAATCGAAAAAGAA GAAAATCAAAGAACGTCGACGAGAGAAGAAAGAACGAAAGAAATCAAGCA AAAAGAAAAAGAAGAGGAAGAATTCTACGTCATCCATTGAAAGTGAAAGC GATGAGTCAGCAAGTTCTGGTGACGAAGAACAACCTAGTGAGTGGAAAAC CTTAATGATAATGTTTTAATTTGTAATGTTGAACAGGCTGGTTCCTTAAG AAGTTCAGCAGAAAAAAGTTACCCTCGTGTAGACCAGATGTTGTGCGTCT ATATCCCCTACTATAACCAATTCATTCACTTAAATCTCTGTTATCAGAGT CAAATTATTATAAGATATGTCTTCTCTTCGTTTACTGCCACTTTTGTATG AACAAATAATATTTGCAATTTTTCAACTGTAACTGGATTGTATTGTAATG CCTTTGCAAATGTAAAGGAGCTCCCTGAAGCTCTTGGGCGGTATTTTGTC TTATTGCACAAACACTTTTCAAAAGCAATGCGAAAAAAAAAAAGTTACAA ATAGCGTTCCCTTTTGCAGAAAATTCGTCGACTTCAAAAGAAAAGGATGA AGATGAAGAAGAAGATGCTTCGAATATTTGGAAGAAACCTGTCAAAGAAG ATGTCGAAAAAACAAGGTCAAATTTCATTTTTACAACCTTATTTTACTGT TATTGACAAATTTGACCCAGGAGCATAGTCAGAGGGCTTGTGTAGGGAAA TTCTATAAGATTTAGTAAAATATTTTTCGTATTTTCATTATATAAAGATG GTAAATAATATTGTCTTCTCTCTGCTATACCTGACAATCTCTATAACTAA CTGGAAGGAATTGATTTCAAAATCCGCCCTCTAAATCACTCTTCTATGTT GCCCCTTTGTATTGTGACAATACTATTTTGGTACCTTATCAACTTAGTAG TGAATGATACATTTACTAAAGCTCTTGGAAAGTACATTATCATTAATAGT GACCGTAGTGAAAAAGTAGAGCATTCGGTTACGGTGTGCAAATTTGTGGG CTCAATCCCAAGACGGATCATACCAAAAGACTTCGTACAAAATTGTACTT AGTGCTTCTCTGCTTGGTGCTCAGCAAGTAAGACAAGGATCAAGGATAAG TGGAGTAATAGAGGGACATAGCATGGCGCCCTCCCTTGCCTTCGGGTTTA ATAGCTATCGAAAGAGGAGCTTTTGGGTCGCCTCTGACTGCGGTCGCAAG ATTTACTGTACTTATTTTGAACATATTGTAACCAAATCTTNGGTCGCCTC CGACTGCGGTCGCAAGATTTACTGTACTTATTTTGAAGATACTGTAACCA AATCTATTTCTCTCATAGGGAGGAAGAATTTGATGAATACTTGGACGATC TCTTTATGTAAAACAAGTTAGAAAAAAGTTCTTGGACAAGGCTAAATTTA TACGCGGATGAAGGCTAATGGAATGATATAAATCAATCGTGTAGATACCC AAGCTTCAGGAGGTTTAGTTATGCACGAAGCTGTATGTGACGTCCAATTC TCTGGTAAGTCAAGTAAGATGCAACAAATATGTGAAAGAACAGTCAAGCC CAAAGACTTAGATTTCTGGGTAAGAGAAACCCTAATACTGAAGTAAATTG TACTGCAAATTCTTTACTGTAACTGCCCAAAGTTACTAAGTGAAAGACGA AGACACCTTTTACGATGATTGGGAGATGACTTGATGAATGATTGAAAGTT TGCCCGACTTATCTAAAATCCAGGTGGTCGTATGAATTGAACGGCTATAT AAATACTTGTCAACACTAAAAATCTTAAAAAAGAATACTTGTTTTAGTAA TAAAACTTTTTTTGTAATAGTTGGTTAATGTAATATTTCAATTCGATGAT TTTAAACCAAAAACTTATTATTGGAGATGATATCTTATGCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043914XLOC_043914Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070570-exon-scaffold_56-1575043694:878051..878114TCONS_00070570-exon-scaffold_56-1575043694:878051..878114Clytia hemisphaericaexon
TCONS_00070570-exon-scaffold_56-1575043694:877911..877953TCONS_00070570-exon-scaffold_56-1575043694:877911..877953Clytia hemisphaericaexon
TCONS_00070570-exon-scaffold_56-1575043694:874378..874550TCONS_00070570-exon-scaffold_56-1575043694:874378..874550Clytia hemisphaericaexon
TCONS_00070570-exon-scaffold_56-1575043694:873899..873995TCONS_00070570-exon-scaffold_56-1575043694:873899..873995Clytia hemisphaericaexon
TCONS_00070570-exon-scaffold_56-1575043694:872622..873196TCONS_00070570-exon-scaffold_56-1575043694:872622..873196Clytia hemisphaericaexon
TCONS_00070570-exon-scaffold_56-1510915933:878051..878114TCONS_00070570-exon-scaffold_56-1510915933:878051..878114Clytia hemisphaericaexon
TCONS_00070570-exon-scaffold_56-1510915933:877911..877953TCONS_00070570-exon-scaffold_56-1510915933:877911..877953Clytia hemisphaericaexon
TCONS_00070570-exon-scaffold_56-1510915933:874378..874550TCONS_00070570-exon-scaffold_56-1510915933:874378..874550Clytia hemisphaericaexon
TCONS_00070570-exon-scaffold_56-1510915933:873899..873995TCONS_00070570-exon-scaffold_56-1510915933:873899..873995Clytia hemisphaericaexon
TCONS_00070570-exon-scaffold_56-1510915933:872622..873196TCONS_00070570-exon-scaffold_56-1510915933:872622..873196Clytia hemisphaericaexon
TCONS_00070570-exon-scaffold_56-1491911889:878051..878114TCONS_00070570-exon-scaffold_56-1491911889:878051..878114Clytia hemisphaericaexon
TCONS_00070570-exon-scaffold_56-1491911889:877911..877953TCONS_00070570-exon-scaffold_56-1491911889:877911..877953Clytia hemisphaericaexon
TCONS_00070570-exon-scaffold_56-1491911889:874378..874550TCONS_00070570-exon-scaffold_56-1491911889:874378..874550Clytia hemisphaericaexon
TCONS_00070570-exon-scaffold_56-1491911889:873899..873995TCONS_00070570-exon-scaffold_56-1491911889:873899..873995Clytia hemisphaericaexon
TCONS_00070570-exon-scaffold_56-1491911889:872622..873196TCONS_00070570-exon-scaffold_56-1491911889:872622..873196Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:872622..878114 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
40.1166 41.5447 42.4664 42.6608 17.6173 13.8515 20.0955 18.3157 16.1022 13.7807 14.0477 12.8619 10.5875 8.55949 16.2822 16.9946 23.8736 22.2064 8.24896 13.2269 14.1052 12.6725 24.9064 19.3564 11.4259 13.3224 8.32271 6.36354 18.0077 17.2733
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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