TCONS_00070566 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070566
Unique NameTCONS_00070566
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1917

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070566 ID=TCONS_00070566|Name=TCONS_00070566|organism=Clytia hemisphaerica|type=transcript|length=1917bp
AACCGTCacacaaaattattttgaattaattaATGTGATGTTGACATTGG
ATTTGTAATTTTGACTTTTCTTGATGTGAACATTTTTGATGTGTTTATGA
TGCTCAGAAGAAGCCAGACGTCTTACTTCTgctgttcaattttctttgtg
gTGGCACTCGTCAATTGTGGCAGTTATAatttttttaacGTCAATCTCAA
TGTGGCTTCAGGATCCACGGTCTATCTGTCTTGCAAGGACCTTATCACCG
ATAACATCACACAATATCACTTCCAGTGGCTTAAAGATGGTATTGATGTT
AGAGAGAAAAATTTTAGattCTTTTACCAAAGCCTGACGCTTGTGAATAC
TTTAACTTTCAAAGACATCAGGTTTGATGACGCAGGCTTATACGAATGCA
TCGTTACCAATTTAGTTGGAAATCAGACAAATTTGCAGAGGGTTTTTGAG
ATCAACGTCCAAGaaAAAGATGAAAAGTTGAGATTTTCGCATGCATTGAA
CGGTTCGAGTTTGGTCATACAAAGAGAACTTGGTCAAAGTGTATCGTTCA
ATTGTCACGTGGCTGGAGCTGCTGATCTGGCAAGACACTACCAATGGAGT
TACCTCGACACCAATAAGACTTTAGACAACATAACATTATTGAAGAGAGG
CTCAGAGATGAATGTATTATCACTAAATGACTTGGAAATTGATCAAGGTG
GAACTTATTCTTGTGTTGTTTCAAATCTCAATGGCTTCATTCGAAGGGAA
TACACTCTACAAATTATAGATGGAAGTGAATCACGGAGAAAGGCGAAGGA
AGAGCGTAAACGTAAACACCGAAATGAAATCATCATCATATGTTTGTCAT
GTGTGGCTGCTCTTTCCCTCATTACAATCGTCGCTATCTTTCTCTCCAAA
TGCTTCaaatctcattggtggaaatggAAAACTCGAAGAAATCGCGCCCA
CTCTTATCATTACCACGCTTCTACCTCTGAACCGCCCCAAACGCCTAATG
GAAATGTCTTCAAGCAAATCACGCCCTGGTGATGATACGTTTATCCAATC
AAAAATGGAATAGGAGAACAACACTTGCGTTATTCTTTAGGAGAAATTGG
GTCATTTTAGAGATCTTTCTGGATAGATCTAGTGAAAAAGAACCGAAAAA
AGAACCGGCCGGTTTTTAAACAACTGTACCACTGTACACTTATACGGGTG
AACTTATTGGCTTGTGAAGAGCGAGAAATTTGTGACAGAAGTTATTGCAA
AATATTGCTGCTTATTTGATTTGACAGGAGTGAAAAATGAGACTCCTATT
TAGAAATGGCTCTAAactaaaaatttacaaatttaaattttatgcTATTG
TATGACAATaagatattttattttaagtttaaaaaatattcaagtcgaAC
ATTAGTTCTTGTAAAAGCAGGAGAATAATTACCAAGCAATTTTATCGCGA
AATTCAGCTATCAAACTCTATACCatgtagaaaatattttttcaagaaaa
tgatttttgaaaagctgaaaGTCTTTATCTATATATATACGATATCTACG
AGTCTTCATTTTACCAAAGTCTGGTAAGAACAgtgttcttttgaaatttt
ctcttcGAATGCTCTTCTCCACTTGGTATGTAGGTTTTATGTTCGAAAGA
CATATTTCTGTTCACCGAAAACGTTATATTTCGCCGAAAAGACAGTCTGA
TAATTATAAATCAAATGTTTCTGCTCTTCTTCTTTGCTttcaaatttatt
aaaattcttCTTCGCTTCATTAACGAAGAAATTAGCCATGTGTTGCGCCA
ATAGGACTGCATTCGAAGTGTGAGGTATATTAGGTCCCAGACCCTCTGCG
TTGTCGAATTCAAAACTGTTCATTTCTGGATGCCATTGAACGGCGTAGAT
TGGAAAATCATTCGCTG
Run BLAST on NCBI

transcript from alignment at scaffold_56:866423..872036-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070566 ID=TCONS_00070566|Name=TCONS_00070566|organism=Clytia hemisphaerica|type=transcript|length=5614bp|location=Sequence derived from alignment at scaffold_56:866423..872036- (Clytia hemisphaerica)
AACCGTCACACAAAATTATTTTGAATTAATTAATGTGATGTTGACATTGG
ATTTGTAATTTTGACTTTTCTTGATGTGAACATTTTTGATGTGTTTATGA
TGCTCAGAAGAAGCCAGACGTCTTACTTCTGCTGTTCAATTTTCTTTGTG
GTGGCACTCGTCAATTGTGGCAGTTATAGTAAGTTTTCTGTTTTCTTTGT
TATTTTTACATTATTTCGCAAATTTGAAAATGGGCTTTTCCAGAAAAAAA
TTGAATATGGGGGGTGGAGGATATAACAATTTTCAGTGATTTACCCCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCCCCCCCCCGGACAATATATCCTCCACCC
TCATGTACGGACATTTTCTGGAAGAAGATTATTGTATTTGATTGAACGAT
AAAATATTGGTAATTCTTTTAATTTATTTCAGATTTTTTTAACGTCAATC
TCAATGTGGCTTCAGGATCCACGGTCTATCTGTCTTGCAAGGACCTTATC
ACCGATAACATCACACAATATCACTTCCAGTGGCTTAAAGATGGTATTGA
TGTTAGAGAGAAAAATTTTAGGTAACAATTTCTCTTGAGATTAACTGCAG
CATGCAGTACAACAAGGACTTCAAACAGAAATCAATGGAAAAATATAAAT
TTGAATTGTCAGGGGGCTATTAAAATTTATTGTATGGGTAGACTCAGGCT
GGGGAAAGCCTTAAATTTTAGATCAAAGTTTTAAAAACCCTTTTTACGAA
GTGATTTGTTTCTACTCTCTATTCTGTATTTGTTTGTTTTCAGATTCTTT
TACCAAAGCCTGACGCTTGTGAATACTTTAACTTTCAAAGACATCAGGTT
TGATGACGCAGGCTTATACGAATGCATCGTTACCAATTTAGTTGGAAATC
AGACAAATTTGCAGAGGGTTTTTGAGATCAACGTCCAAGGTATTGTTATT
TACCTCAAATTACCTTTTTTGAGGTAAAAAATACTCTAATAGTCTACAAC
TGAAATTAAATTTCAACCAGGGAGGGGGGAGTCATGCAGTTACTACAAGA
TATCATGAGTAGTAAGTGTCTTTTTGATGCTAACAATCTCATACCACCAC
CCTTTACCTCTAGGTAGTAACTGTTTTCTTGACAAAAAAATGAATAACCA
CCCCAAAATTTCCCCATTTTAAAGTTACTTTCTGGAATCTGGCAGAACAG
TGTAGTGCAGGGGCTTATGTATTCTCGTGTGCACAGGTTTGTTACAAGCA
AACTAACTTTTGATCTGATGCCCTGACCCCTCAAGGACCAAGAAAATTTT
GGGTTAAAGAATTCTAACACCCCTGCTGCCACTGGTTGCCATGGAAAATG
ATGTCATTGGTTACCATAGCAACAAAAAATTAAAGTCGTCAAATTCAAAA
AAAATTTTGTTCCATTCGAAAGAGCATGAAAAACTGGTAAAGAAAAAGGT
CACAACCTATATCTGGAAATGCATATATCTCAAGATATTAAGGAAATAAG
GCATAACGACGTCATAAATGATGACGTCATCGAAAAATAAAAAATTGTCA
AAATTCAAAAAAAATTTGGCTCATTCGAGAGAAAAACTTCCAGGGAACAA
AAAATATTACTACGAAAAAGTTTCAAAATCATTTAAAGAAAGTATATTGA
TAAAAAATTGATATTTTTTTATTTTTGCCTGTGGAAGGTTGGAGCTTGGG
GCTAGGCACGCTCAGCCCGGCAGATTACAGGCAAAACTTAAAAATACCAA
TAGCCTCTTTTAAAATGATTTTTACCTTTACTTCCTAGTTATCTTCTTTC
ATTTTGAGCTTGATTTAAATAGAGCCTAAAACTGCATTCGATTTTAGTGT
TGAAACATTTCGAATGCTTTGAAAATATTTGATTTCAAAATCCAAAAAGA
GAAGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTC
TTCAGACTTGAATTTGGTACCACCCTCAACTACAGTTACTACCTTTGGGT
AGTAACTGTTTTTCAAATTTTGAAAATTTAGACCACCACGGTAGTAATTG
TGATAGTGTCGGATAGTAACTGCATGACCCCCCCCTCTGTTTCAACTGAA
ATTATGTAAACATGAAAGTACAATCTCAATCCAATTACTAACTTCAGTTC
ATTTATTTTCTTTCTAGAAAAAGATGAAAAGTTGAGATTTTCGCATGCAT
TGAACGGTTCGAGTTTGGTCATACAAAGAGAACTTGGTCAAAGTGTATCG
TTCAATTGTCACGTGGCTGGAGCTGCTGGTATTTCTATACTTATTTTTTT
TTCTTTTGTTGATTTGTTTGTGAACCTTGCAACGAGTTTCCATTTAAGAT
TTGTTGCATGGAATATTCCTCCAATGTATGGCTTTATCTAGCCATAGGTA
TTATCAGGCTTGAGAAAGAGAACCCAATTCAAAGTAAAGGTCCCTTATTT
AGCTTTAAACAGCCTGTTTTTAGCCTATATTTACCTTATATTTGGGTTTT
CAGAAGTGAAATTTCCAACCCCCTCGGCAATTAGGTCCCCCCGTTTATTT
GGAACCTAAGAGTACTAACCTAGAAGTACTAAACTAAAAATCTATAATGG
TGGAAGCCATGTCAGATCTAAGATCGGTGTGCGTCGCAGTTAACATTTTT
TCAAGCTCATTCAATCATGTTTTCCTCACTAGATCTGGCAAGACACTACC
AATGGAGTTACCTCGACACCAATAAGACTTTAGACAACATAACATTATTG
AAGAGAGGCTCAGAGATGAATGTATTATCACTAAATGACTTGGAAATTGA
TCAAGGTGGAACTTATTCTTGTGTTGTTTCAAATCTCAATGGCTTCATTC
GAAGGGAATACACTCTACAAATTATAGGTAAGATTCACTCACATGTTTGA
ATTAGAGTCTTTCTTTCAGGGATCTTGGTCTCCTCAAAGACGTCTTTTGA
GATGAATTTTTTCTTGGAGCTTGGAAAAAAAAAGACTTTTCACTGTGCAG
AACGGGTTGAACTCATTTGGTCTTGAAAGCTTATATATGTCATTTCTATA
ATTACAATTTTCAGAGCTGTTAACGCTGAAAATAATAAGATTGATGATTG
TCTTTCATAGGGACGGTATGAAACTTTAAGTTCAAAAAACTACACGAGTC
TCATTCTTAATGTTTTCAACCCATGTTCTTTTAATCTTTTAATTTAATTT
CTCCATTTTCTAACAGATGGAAGTGAATCACGGAGAAAGGCGAAGGAAGA
GCGTAAACGTAAACACCGAAATGAAATCATCATCATATGTTTGTCATGTG
TGGCTGCTCTTTCCCTCATTACAATCGTCGCTATCTTTCTCTCCAAATGC
TTCAAATCTCATTGGTGGAAATGGAAAACTCGAAGAAATCGCGCCCACTC
TTATCATTACCACGCTTCTACCTCTGAACCGCCCCAAACGCCTAATGGAA
ATGTCTTCAAGCAAATCACGCCCTGGTGATGATACGTTTATCCAATCAAA
AATGGAATAGGAGAACAACACTTGCGTTATTCTTTAGGAGAAATTGGGTC
ATTTTAGAGATCTTTCTGGATAGATCTAGTGAAAAAGAACCGAAAAAAGA
ACCGGCCGGTTTTTAAACAACTGTACCACTGTACACTTATACGGGTGAAC
TTATTGGCTTGTGAAGAGCGAGAAATTTGTGACAGAAGTTATTGCAAAAT
ATTGCTGCTTATTTGATTTGACAGGAGTGAAAAATGAGACTCCTATTTAG
AAATGGCTCTAAACTAAAAATTTACAAATTTAAATTTTATGCTATTGTAT
GACAATAAGATATTTTATTTTAAGTTTAAAAAATATTCAAGTCGAACATT
AGTTCTTGTAAAAGCAGGAGAATAATTACCAAGCAATTTTATCGCGAAAT
TCAGCTATCAAACTCTATACCATGTAGAAAATATTTTTTCAAGAAAATGA
TTTTTGAAAAGCTGAAAGTCTTTATCTATATATATACGATATCTACGAGT
CTTCATTTTACCAAAGTCTGGTAAGAACAGTGTTCTTTTGAAATTTTCTC
TTCGAATGCTCTTCTCCACTTGGTATGTAGGTTTTATGTTCGAAAGACAT
ATTTCTGTTCACCGAAAACGTTATATTTCGCCGAAAAGACAGTCTGATAA
TTATAAATCAAATGTTTCTGCTCTTCTTCTTTGCTTTCAAATTTATTAAA
ATTCTTCTTCGCTTCATTAACGAAGAAATTAGCCATGTGTTGCGCCAATA
GGACTGCATTCGAAGTGTGAGGTATATTAGGTCCCAGACCCTCTGCGTTG
TCGAATTCAAAACTGTTCATTTCTGGATGCCATTGAACGGCGTAGATTGG
AAAATCATTCGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043914XLOC_043914Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070566-exon-scaffold_56-1575043694:871859..872036TCONS_00070566-exon-scaffold_56-1575043694:871859..872036Clytia hemisphaericaexon
TCONS_00070566-exon-scaffold_56-1575043694:870766..870904TCONS_00070566-exon-scaffold_56-1575043694:870766..870904Clytia hemisphaericaexon
TCONS_00070566-exon-scaffold_56-1575043694:870398..870543TCONS_00070566-exon-scaffold_56-1575043694:870398..870543Clytia hemisphaericaexon
TCONS_00070566-exon-scaffold_56-1575043694:868509..868619TCONS_00070566-exon-scaffold_56-1575043694:868509..868619Clytia hemisphaericaexon
TCONS_00070566-exon-scaffold_56-1575043694:867910..868104TCONS_00070566-exon-scaffold_56-1575043694:867910..868104Clytia hemisphaericaexon
TCONS_00070566-exon-scaffold_56-1575043694:866423..867570TCONS_00070566-exon-scaffold_56-1575043694:866423..867570Clytia hemisphaericaexon
TCONS_00070566-exon-scaffold_56-1510915933:871859..872036TCONS_00070566-exon-scaffold_56-1510915933:871859..872036Clytia hemisphaericaexon
TCONS_00070566-exon-scaffold_56-1510915933:870766..870904TCONS_00070566-exon-scaffold_56-1510915933:870766..870904Clytia hemisphaericaexon
TCONS_00070566-exon-scaffold_56-1510915933:870398..870543TCONS_00070566-exon-scaffold_56-1510915933:870398..870543Clytia hemisphaericaexon
TCONS_00070566-exon-scaffold_56-1510915933:868509..868619TCONS_00070566-exon-scaffold_56-1510915933:868509..868619Clytia hemisphaericaexon
TCONS_00070566-exon-scaffold_56-1510915933:867910..868104TCONS_00070566-exon-scaffold_56-1510915933:867910..868104Clytia hemisphaericaexon
TCONS_00070566-exon-scaffold_56-1510915933:866423..867570TCONS_00070566-exon-scaffold_56-1510915933:866423..867570Clytia hemisphaericaexon
TCONS_00070566-exon-scaffold_56-1491911889:871859..872036TCONS_00070566-exon-scaffold_56-1491911889:871859..872036Clytia hemisphaericaexon
TCONS_00070566-exon-scaffold_56-1491911889:870766..870904TCONS_00070566-exon-scaffold_56-1491911889:870766..870904Clytia hemisphaericaexon
TCONS_00070566-exon-scaffold_56-1491911889:870398..870543TCONS_00070566-exon-scaffold_56-1491911889:870398..870543Clytia hemisphaericaexon
TCONS_00070566-exon-scaffold_56-1491911889:868509..868619TCONS_00070566-exon-scaffold_56-1491911889:868509..868619Clytia hemisphaericaexon
TCONS_00070566-exon-scaffold_56-1491911889:867910..868104TCONS_00070566-exon-scaffold_56-1491911889:867910..868104Clytia hemisphaericaexon
TCONS_00070566-exon-scaffold_56-1491911889:866423..867570TCONS_00070566-exon-scaffold_56-1491911889:866423..867570Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:866423..872036 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	2.72547e-07	11.0365	3.75375	4.98965	5.65066	1.63222	5.12742	4.52612	6.04737	0.705917	0.147788	0.571415	0.160331	5.17941	5.74065	0	0.01938	0	0	3.34901e-06	3.15966e-05	0	0.823601	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070566 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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