TCONS_00070561 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070561
Unique NameTCONS_00070561
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1028

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070561 ID=TCONS_00070561|Name=TCONS_00070561|organism=Clytia hemisphaerica|type=transcript|length=1028bp
TAGTATTTCCGTGAAAAATTCTCACTTCGCAGATTTTAGTCTAATGGTTC
TCCTCTGACTAGGGTTGTGTTATTCTTACAATAATTGTTATGCGGGAGAT
ACAAGGAAATGTTGTGAATGTTTTCCATCCTTTTATGCAAAAGTGTAATC
AGCGCATGATAGGGTGCCATAAATTACGAGCTGCCAAAAAAATGAATCGA
AATAAAAGGTAGAAAATTAACGATTTATATGTTGGACAGAATTGCAGgag
gttttttttttgtcgttgtTTTTTTGTCAACAAAAGAAATACACTACGTG
GTGAGAGGAAACGTGGAAGAAACATTCCATGGAAGATTTTCCCCTCCAAA
TGATCTGTCAACCGCAAACGATTACCTGCAAACATACTTATCTCTTCCGG
CTCTTTGTTAAACGTATGTTCCAACATGTTAAAAAGCCTGAGAGATTGAA
CGCTCAAAACATTCTTTCAGAACTAGTTACTAACTTGCNCTGATAGATTG
AACGCTCAAAACATTCTTTCAGAACTAGTTACTAACTTGCGGTCACTTAC
CTGGACCCATAGAAAAAAGACTTGATTTTTAATTGCTGGACAATTAAGAA
CTCACCGTCATTATGGTTTCAAAGTTTTCTTCAGgatttttattGGCAAG
TTTGTTGCTCATGGTGCTGGTCATCACAGCTCAAGCCAGACCCACAAAAC
AGAATAACCAAGGAGTTTgcaatttgatgaaaaaatgtaCAGAGGAGTTG
GATTGTCAGACGTCCAGCACCCTCTCCGATGGCTGCTTCTGTAAAAGACG
GGGGCAATGCAAGTGTAGTCCGAAAAACGGTCGATGCATGCCTGACATGA
GCAAGCAGTTAAGTAAATCATCAAGTGTGAAACGAGgtaaaatattgaaa
agtcaAATCACTAAACAGTGGACTGGATCGAGAACCATCACCAGATATTT
GTTTATTGTGGCTTCAAAATGAAATCCTTGCTGTGAGaagctttttttaa
tttatttattgttttgataCATTCGAAG
Run BLAST on NCBI

protein sequence of TCONS_00070561-protein

>TCONS_00070561-protein ID=TCONS_00070561-protein|Name=TCONS_00070561-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
MVSKFSSGFLLASLLLMVLVITAQARPTKQNNQGVCNLMKKCTEELDCQT
SSTLSDGCFCKRRGQCKCSPKNGRCMPDMSKQLSKSSSVKRGKILKSQIT
KQWTGSRTITRYLFIVASK
Run BLAST on NCBI

transcript from alignment at scaffold_56:851183..853995-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070561 ID=TCONS_00070561|Name=TCONS_00070561|organism=Clytia hemisphaerica|type=transcript|length=2813bp|location=Sequence derived from alignment at scaffold_56:851183..853995- (Clytia hemisphaerica)
TAGTATTTCCGTGAAAAATTCTCACTTCGCAGATTTTAGTCTAATGGTTC
TCCTCTGACTAGGGTTGTGTTATTCTTACAATAATTGTTATGCGGGAGAT
ACAAGGAAATGTTGTGAATGTTTTCCATCCTTTTATGCAAAAGTGTAATC
AGCGCATGATAGGGTGCCATAAATTACGAGCTGCCAAAAAAATGAATCGA
AATAAAAGGTAGAAAATTAACGATTTATATGTTGGACAGAATTGCAGGAG
GTTTTTTTTTTGTCGTTGTTTTTTTGTCAACAAAAGAAATACACTACGTG
GTGAGAGGAAACGTGGAAGAAACATTCCATGGAAGATTTTCCCCTCCAAA
TGATCTGTCAACCGCAAACGATTACCTGCAAACATACTTATCTCTTCCGG
CTCTTTGTTAAACGTATGTTCCAACATGTTAAAAAGCCTGAGAGATTGAA
CGCTCAAAACATTCTTTCAGAACTAGTTACTAACTTGCNCTGATAGATTG
AACGCTCAAAACATTCTTTCAGAACTAGTTACTAACTTGCGGTCACTTAC
CTGGACCCATAGAAAAAAGACTTGATTTTTAATTGCTGGACAATTAAGAA
CTCACCGTCATTATGGTTTCAAAGTTTTCTTCAGGTAAGTCAATTGGTTT
AGTTTTTGTCATTATTTTACGCAAAAATATATTTTGAATTTCTATTTGTA
GTTTTCTAAATAAATTGTTTTGGCTTACAGAAAGCATTATGGCCTATTAA
GCTATTACTAGTTGAAAAAAAGTTTTAGTTTCTCAATATATTGAAAGTTT
AAGTGTTGATAATTTTTTCAGGATTTTTATTGGCAAGTTTGTTGCTCATG
GTGCTGGTCATCACAGCTCAAGCCAGACCCACAAAACAGGTATATATTAT
GAATATTTTCAATTTTTTAAATCTATGCTCGAAAAACTCAGTGATCACTC
AACATTAAAACGTTTGAGCAATGAATGGATAGCGAACTGATTAAGATATG
GAGTTTACCACTACAGTATTTGTCTCTTAATTTAATACTTTGCGTCAACG
TTTTTCAAACCTGATGACAGTTACCGAGTTCTCTTAACGCGATAAGGCTT
CGGAGCTATGAAGCCTCAGCTTAATGTGCTATAAAAATATAAACAGTTGA
CTTTGATTAAGTTTCTTGCTTTGATTTGATCTGCAAGTGACGGTGATTTT
TCTTTTTTGAAAGTATTTCATACAATTAGCCAAACTGGATGACACTGCAG
GGATTCTTCTAAAGCCCTTTTTTATGTCCGTATACCGGCCAAAATATAAA
ATATATTTTCTAGCAAAATCAAACTTGTTTGTTGTTTACAAACAAAAATC
TTTAAAGATATTATCTACATATTCAAAATATTTTTGGGAGCTTCGCCCTC
TGAACACCAACCAAACCCCCAGCTTCATTAATATACATGTACAGCTTTGC
TGAGAAGATTCCCTTTCAGGCATATTAGAAACTCAATCTAAGTTTACAAA
AACGGCCCCAGTGCTTAGAAAAATCCCTGGACTAGTTCGAAATAAAGATA
TGATGAAAGGTTCAAATAACTGTACTGTTTAGGTTACGATTCTCTAACAT
GTACCACTATGTACTATTACTAATATGTACGTATCTTTTATTACAGAATA
ACCAAGGAGTTTGCAATTTGATGAAAAAATGTACAGAGGAGTTGGATTGT
CAGACGTCCAGCACCCTCTCCGATGGCTGCTTCTGTAAAAGACGGGGGCA
ATGCAAGTGTAGTCCGAAAAACGGTCGATGCATGCCTGACATGAGCAAGC
AGTTAAGTAAATCATCAAGTGTGAAACGAGGCAAATTATTGAAAAGTCAA
ATCACTAAACAGTGGACTGGATCGAGAACCATCACCAGGTATTTGTTTAT
TGTGGCTTCAAAATGAAATCCTTGCTGTGAGAAGCTTTTTTTAATTTATT
TATTGTTTTGATACATTCGAAGGAATTTTGTTATTTTTTATTTATTTATA
ATTTCATCAAATCTTATAATTGAATTATAATTGNTGATTTTTCTTTTTTG
AAAGTATTTCATACAATTAGCCAAACTGGATGACACTGCAGGGATTCTTC
TAAAGCCCTTTTTTATGTCCGTATACCGGCCAAAATATAAAATATATTTT
CTAGCAAAATCAAACTTGTTTGTTGTTTACAAACAAAAATCTTTAAAGAT
ATTATCTACATATTCAAAATATTTTTGGGAGCTTCGCCCTCTGAACACCA
ACCAAACCCCCAGCTTCATTAATATACATGTACAGCTTTGCTGAGAAGAT
TCCCTTTCAGGCATATTAGAAACTCAATCTAAGTTTACAAAAACGGCCCC
AGTGCTTAGAAAAATCCCTGGACTAGTTCGAAATAAAGATATGATGAAAG
GTTCAAATAACTGTACTGTTTAGGTTACGATTCTCTAACATGTACCACTA
TGTACTATTACTAATATGTACGTATCTTTTATTACAGAATAACCAAGGAG
TTTGCAATTTGATGAAAAAATGTACAGAGGAGTTGGATTGTCAGACGTCC
AGCACCCTCTCCGATGGCTGCTTCTGTAAAAGACGGGGGCAATGCAAGTG
TAGTCCGAAAAACGGTCGGTGCATGCCTGACATGAGCAAGCAGTTAAGTA
AATCATCAAGTGCAAAACGAGGTAAAATATTGAAAAGTCAAATCACTAAA
CAGTGGACTGGATCGAGAACCATCACCAGATATTTGTTTATTGTGGCTTC
AAAATGAAATCCTTGCTGTGAGAAGCTTTTTTTAATTTATTTATTGTTTT
GATACATTCGAAG

Coding sequence (CDS) from alignment at scaffold_56:851183..853995-

>TCONS_00070561 ID=TCONS_00070561|Name=TCONS_00070561|organism=Clytia hemisphaerica|type=CDS|length=1440bp|location=Sequence derived from alignment at scaffold_56:851183..853995- (Clytia hemisphaerica)
GTAAAATATTGAAAAGTCAAATCACTAAACAGTGGACTGGATCGAGAACC
ATCACCAGATATTTGTTTATTGTGGCTTCAAAATGAAATAACCAAGGAGT
TTGCAATTTGATGAAAAAATGTACAGAGGAGTTGGATTGTCAGACGTCCA
GCACCCTCTCCGATGGCTGCTTCTGTAAAAGACGGGGGCAATGCAAGTGT
AGTCCGAAAAACGGTCGATGCATGCCTGACATGAGCAAGCAGTTAAGTAA
ATCATCAAGTGTGAAACGAGGATTTTTATTGGCAAGTTTGTTGCTCATGG
TGCTGGTCATCACAGCTCAAGCCAGACCCACAAAACAGATGGTTTCAAAG
TTTTCTTCAGGTAAAATATTGAAAAGTCAAATCACTAAACAGTGGACTGG
ATCGAGAACCATCACCAGATATTTGTTTATTGTGGCTTCAAAATGAAATA
ACCAAGGAGTTTGCAATTTGATGAAAAAATGTACAGAGGAGTTGGATTGT
CAGACGTCCAGCACCCTCTCCGATGGCTGCTTCTGTAAAAGACGGGGGCA
ATGCAAGTGTAGTCCGAAAAACGGTCGATGCATGCCTGACATGAGCAAGC
AGTTAAGTAAATCATCAAGTGTGAAACGAGGATTTTTATTGGCAAGTTTG
TTGCTCATGGTGCTGGTCATCACAGCTCAAGCCAGACCCACAAAACAGAT
GGTTTCAAAGTTTTCTTCAGGTAAAATATTGAAAAGTCAAATCACTAAAC
AGTGGACTGGATCGAGAACCATCACCAGATATTTGTTTATTGTGGCTTCA
AAATGAAATAACCAAGGAGTTTGCAATTTGATGAAAAAATGTACAGAGGA
GTTGGATTGTCAGACGTCCAGCACCCTCTCCGATGGCTGCTTCTGTAAAA
GACGGGGGCAATGCAAGTGTAGTCCGAAAAACGGTCGATGCATGCCTGAC
ATGAGCAAGCAGTTAAGTAAATCATCAAGTGTGAAACGAGGATTTTTATT
GGCAAGTTTGTTGCTCATGGTGCTGGTCATCACAGCTCAAGCCAGACCCA
CAAAACAGATGGTTTCAAAGTTTTCTTCAGGTAAAATATTGAAAAGTCAA
ATCACTAAACAGTGGACTGGATCGAGAACCATCACCAGATATTTGTTTAT
TGTGGCTTCAAAATGAAATAACCAAGGAGTTTGCAATTTGATGAAAAAAT
GTACAGAGGAGTTGGATTGTCAGACGTCCAGCACCCTCTCCGATGGCTGC
TTCTGTAAAAGACGGGGGCAATGCAAGTGTAGTCCGAAAAACGGTCGATG
CATGCCTGACATGAGCAAGCAGTTAAGTAAATCATCAAGTGTGAAACGAG
GATTTTTATTGGCAAGTTTGTTGCTCATGGTGCTGGTCATCACAGCTCAA
GCCAGACCCACAAAACAGATGGTTTCAAAGTTTTCTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043911XLOC_043911Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070561-exon-scaffold_56-1575043694:853362..853995TCONS_00070561-exon-scaffold_56-1575043694:853362..853995Clytia hemisphaericaexon
TCONS_00070561-exon-scaffold_56-1575043694:853107..853174TCONS_00070561-exon-scaffold_56-1575043694:853107..853174Clytia hemisphaericaexon
TCONS_00070561-exon-scaffold_56-1575043694:852166..852349TCONS_00070561-exon-scaffold_56-1575043694:852166..852349Clytia hemisphaericaexon
TCONS_00070561-exon-scaffold_56-1575043694:851183..851324TCONS_00070561-exon-scaffold_56-1575043694:851183..851324Clytia hemisphaericaexon
TCONS_00070561-exon-scaffold_56-1510915933:853362..853995TCONS_00070561-exon-scaffold_56-1510915933:853362..853995Clytia hemisphaericaexon
TCONS_00070561-exon-scaffold_56-1510915933:853107..853174TCONS_00070561-exon-scaffold_56-1510915933:853107..853174Clytia hemisphaericaexon
TCONS_00070561-exon-scaffold_56-1510915933:852166..852349TCONS_00070561-exon-scaffold_56-1510915933:852166..852349Clytia hemisphaericaexon
TCONS_00070561-exon-scaffold_56-1510915933:851183..851324TCONS_00070561-exon-scaffold_56-1510915933:851183..851324Clytia hemisphaericaexon
TCONS_00070561-exon-scaffold_56-1491911889:853362..853995TCONS_00070561-exon-scaffold_56-1491911889:853362..853995Clytia hemisphaericaexon
TCONS_00070561-exon-scaffold_56-1491911889:853107..853174TCONS_00070561-exon-scaffold_56-1491911889:853107..853174Clytia hemisphaericaexon
TCONS_00070561-exon-scaffold_56-1491911889:852166..852349TCONS_00070561-exon-scaffold_56-1491911889:852166..852349Clytia hemisphaericaexon
TCONS_00070561-exon-scaffold_56-1491911889:851183..851324TCONS_00070561-exon-scaffold_56-1491911889:851183..851324Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070561-proteinTCONS_00070561-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:851183..853995 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.25991	0.253453	0.0980945	0.143955	0.0584172	0.0461621	0.22277	0.208555	0.146014	0.0904311	0.175549	0.0576996	0.460955	0.269272	4.18159	0.343161	0.162595	0.299978	0.184194	0.240932	0.167531	0.18386	0.198672	0.225777	0.139527	0.249049	0.356388	0	0.33656	0.0979718
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070561 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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