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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070559 ID=TCONS_00070559|Name=TCONS_00070559|organism=Clytia hemisphaerica|type=transcript|length=620bp
CTTTCATCTGGATAGCTTCGATGCAATCTTTTACATTGCTCTCATTTTTC
TTATAGAAGCAaagataatttaaaaaaaacgtaaaaaaacatGTCAACAC
TATCAACCAATGAAGTGGCAGCAAAAAAACCGGCACCCGAACAAACTCCG
GCCCAGACCTCAAACCCGAAGGAACCTAGTACCCAACCCTCCACGTCAAG
CGATGCAGCTGGTTCAAGTAAGAGTACTGGGGGAGAGGGTAGTGGgaaga
aaaaattgataaaGAGCACTTCTTCGGTGAGCGACCTTCCCATGGCAGGG
GCATCTATGGACAATGATTCTGCAGTTTCTGAGGAACAAGAAGTGGAACG
ACGAAAGTTACAGATGTTGGTATCTGCGTTCAGCGAAGATCAGTTGAACC
GTTACGAAATGTACCGAAGAGCTTCCTTTCCAAAAGCTGCCATTAAAAGG
TTGATGCAGACGATCACGGGCGGTGCGTCCGTTCCGCCCAATGTTGTCAT
AGCAATGGCTGGTATCGCCAAGGTATTTGTCGGGGAGGTCTCAGAAGAAG
CTTTAGACGTAATGGAGAGTTGGGGCGAGACTGGACCCATTGAACCGAAA
CATTTGAGAGAAGCAGCAAN Run BLAST on NCBI transcript from alignment at scaffold_56:788809..794099- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070559 ID=TCONS_00070559|Name=TCONS_00070559|organism=Clytia hemisphaerica|type=transcript|length=5291bp|location=Sequence derived from alignment at scaffold_56:788809..794099- (Clytia hemisphaerica)
CTTTCATCTGGATAGCTTCGATGCAATCTTTTACATTGCTCTCATTTTTC
TTATAGAAGCAAAGATAATTTAAAAAAAACGTAAAAAAACATGTCAACAC
TATCAACCAATGAAGTGGCAGCAAAAAAACCGGCACCCGAACAAACTCCG
GCCCAGACCTCAAACCCGAAGGAACCTAGTACCCAACCCTCCACGTCAAG
CGATGCAGCTGGTTCAAGTAAGAGTACTGGGGGAGAGGGTAGTGGGAAGA
AAAAATTGATAAAGAGCACTTCTTCGGTGAGCGACCTTCCCATGGCAGGG
GCATCTATGGACAATGATTCTGCAGTTTCTGAGGAACAAGAAGTGGAACG
ACGAAAGTTACAGTAAGGCTTTTTTTCCTTTGCACATAGTATGGATTGTA
GGTAGGAAACTTCTAATAGATGGAGTTAGATCTTAGAGAAGCATCTCCAA
ACTATGATAGAGCTTTTTTGTGGAAAATAAATGTTATTGGTATTTTTTAA
ATTAAATAATACATTATAAAACTAGCGTACAATGAGGCTGCTTTAGTGAT
GGCTGTTGGAAACTAATTGGATTTAGGACTTGTAATCACACCTCAATTAA
AACAAAATTAGCATTGACTTCACTCGATTTAAGAAGGATTATTTGCCATT
TGTTGTGATATCTCCGCCAACCTGCGCTGATTGAAGTAACATCTCGTATT
TTTTTCGGGCTTGCAAACGATAACGTAACATTTCTTGCCGTATAAGAACA
CCACGTAGAATATACTATTACACACTACTATCAAACAATGCACAAATTCT
TTATCCTCGATTTCCCGAAAATATCCGATCGGGTAACTGATGATGAATGT
TAGTGTTGTAACCATGGTCGCATAGACAAGAGACATAGCATCGTTCATCG
GTCCAGGTAGGCGGCGACCACGGAACGCTTGCGTTAGACAAACTAACTGA
GCGATGATAAGGAAGCCTGTGATGACGTTTAGATGAAGTTGGACGTCTCC
GTAAAAAGTTCTTGTCATGTTTTCTTTGTCTAGTATGATGCTTATCCTTG
GCTTTCTGATAAAATTCAATATGTAGAAAACACTGTTGGTGACCAATAGA
AATATGAAAACGGTGAATACTTGGACGACTATCGTTCTTCGTGCCTCGCC
CCCTGTCAATTGTATGTTAGAAGTGAAAGCATCAATCAATTTCTGTGATT
TTGTATACACGAAAGCGAGGTTGGCAGTGTAAAGAAGTGATAGATTCAGG
AACTTTGCAACAGTTTTTGTTTTATCTATGTCGTCGTGAAGATAGACAAA
ACAGCTGAATAGAATGGAAAGCAAGATGGTTCCGAGATGAAGAAACGAGA
AGAAAACATCAGAAACTTTCACTGTCGGTGTTTGTCGGTGAATGATGAAA
ATGACCAGCGTTGTCATGGTGATGAACACTCCAAGAGTTGTTAGTAGAAG
TATTGTAATCTTTTGATGGTGATTGAATTTTAAATATATGTTTGTGAATG
GATCTACGCATTCAGTTCTCAAGACGTTTGCGCTGCTTCGAATCCCAAAA
CAAGTGGTACAAGCTTCATTCCCGAAGTTGTTCTTGATCTGGTTCTGAGG
ACATAACTCGCATTTAAATCCAAGCTCTGATTGGATGAACTTGTCAGAAC
TTTCGATCTCACCATAAACCCTTTGGAAGCCTGGTGAACAGTTTAGTTTA
GCGAAAGGTAATGGGTTTCGGTATTTGCTCAAAAATATATCTGACGAATA
AGTTTCAATAAAAGGCTCCCAATTAGGATCCTCATTCCCTTTATTCTTCT
CAAGAATTTTATTAAAAGGTATCATGAAATCTTTAGTTTTTTTCTCTAAA
AACACCATCATCATGGCGCCTTTGAGTGCTTGTATCTTATCGAAGCTTGT
GATGACAGTTTTGTTTTGCACATGCTCGACAGCAATGCCAAGAAAAGATG
CCAACAGAAGCACATGTCTAATTGCGAGTAACTCTGTCAATTCGAAGATG
CTGTTCGCCACATCTTCCTGTAGATCTCGTCGCAACTTGTAGCGTTGGAA
ATTCTCCAAGCTGAACCAATGATCATGTGTGTTGAAGTCNGTGATTGAAT
TTTAAATATATGTTTGTGAATGGATCTACGCATTCAGTTCTCAAGACGTT
TGCGCTGCTTCGAATCCCAAAACAAGTGGTACAAGCTTCATTCCCGAAGT
TGTTCTTGATCTGGTTCTGAGGACATAACTCGCATTTAAATCCAAGCTCT
GATTGGATGAACTTGTCAGAACTTTCGATCTCACCATAAACCCTTTGGAA
GCCTGGTGAACAGTTTAGTTTAGCGAAAGGTAATGGGTTTCGGTATTTGC
TCAAAAATATATCTGACGAATAAGTTTCAATAAAAGGCTCCCAATTAGGA
TCCTCATTCCCTTTATTCTTCTCAAGAATTTTATTAAAAGGTATCATGAA
ATCTTTAGTTTTTTTCTCTAAAAACACCATCATCATGGCGCCTTTGAGTG
CTTGTATCTTATCGAAGCTTGTGATGACAGTTTTGTTTTGCACATGCTCG
ACAGCAATGTCAAGAAAAGATGCCAACAGAAGCACATGTCTAATTGCGAG
TAACTCTGTCAATTCAAAGATGCTGTTCGCCACATCTTCCTGTAGATCTC
GTCGCAACTTGTAGCGTTGGAAATTCTCCAAGCTGAACCAATGATCATGT
GTGTTGAAATTGTGAAAACTTGTTTGGTCATTTTCAAAAGATAACATGTC
ATGAGCGATCAAGGACGTTTTGTTGGTTGTTTCTACATTAACGTCTAATA
TCGCTAGAAATTCTTTTTGAAAAGGTCCAAATAGAATAATGGCTGACTCG
CCCTTTCGCCAACGATTTAAGAGGTCTGATAGAATGTAGCCTTCAACATG
AACTTTTTCCGCATTGATGACGATTTTCTGCAAATGAAATTCTTTTCTAC
CAGCCAATTGGTCATAAGTACCATTGTAGTAATTGTTGAAGATCGGTTTC
AATACATCATCGTGGACTAAAAGTAGGGTCAAATCTTTCCATTGTAATTT
CTCTAATACATATATGAGATACCTGGTATAGTCATTTATCTTCAAATCGT
CATCAGGGAATGCGACCGTCAAAAATGGTTCCCCAGTCATAAATTGCTTG
AACATTTTGGCTGTTTTTGTACTATCAGCATAGAAGACTACAAAAGCCAA
ATTGGGTATTCTGCATTCTCTGTTTTGGTCGCAAGCAATGTGGAATGTGT
GGCCCAGAAGAATTTCCAAAGCTGCTTTCAAAGACTCTTCTGTGTTGTTG
CATTTATAATGGAAACTATGGTATTTCAATTCGATGTAACGCATGTCTGT
ATTGAGTCCAGTAATGTTTGCTCTTAAAAAACTGTCTGCCTCCTGTGTAT
TATCTGAACAGTTTGGTAAGATAGCCACGACGTGATAAGTGAGTATGTGC
TTGCTTAAAGCAATCTGTATTAAACTGGTAAAGAATAGAACGCCAAGAAC
TTTACAATTCATTTTTATCATCTCTCTGAGCAACTACTACGTTTCTTCTG
AATCAAAGATATGTTATATGTTGGGATACTTGTTAGTTTGGTCTCGATAT
CTAATCAAATATTGATTTCACCTGCCCGAATAAAAACTTTCTGTTGTTAA
ATTTTAATAGGTTCTTTTTTTTTCAGTCCAATTATCATATGCTTTTGTAG
CTTGATTCGCACTTTGGTACTCAATATATTGATTAAAAAATACTATACAA
GAAGAAGTTTCTCGTGGCTTAGATCACGAGAATTACGCAAACGTTTTGAG
AATTTTTCTCCCATCATCGGTCATTCTGGAAGTTTTTCTCTCTAGTTTAC
TTTTGCCACAATAAGCTTCCAATATGCATATCACTTGGTCGATAGACTCA
AAATTACTTAAACTTATGGTACTTGTTATGGAAAAATTTGGGTCGTAATT
GAGTCAATTGAAAGGTCATTCTCGTCTTCCTCTACAGTGTCACTTTCGAT
TTATTTACCGCACAAAATTACCATATTAGGCCCCGACCAGTCCAAACAGA
GTAAAATCGTTCCTTGTTCTAAACTTGGATAACATGCATTGGATTTTAAC
CATATATTTCTCGCTTTGAGATATGAATAGAAGACCAGTACAGTATAATA
ACTCCAGCATTCTTTTTCTTTCCCTGCTGATTACTACTCCATCCATTACT
TTACAGGATGTTGGTATCTGCGTTCAGCGAAGATCAGTTGAACCGTTACG
AAATGTACCGAAGAGCTTCCTTTCCAAAAGCTGCCATTAAAAGGGTGAGT
GGCATATTGACCCAATATTAGAATTGTTAACTTGAAATATCAATGTGCAA
AGGGATTAAATTTCTTGGGGGCCTTTCCATGATATATTAACGATTTTGTG
TCTTTCTTTACCAGTAAACATTTTAAAAGTGGTATTTGTGCCTTTTTAAC
TTTCTACTAAGAAACAATTTTTGTGGATAACACGCAAACGCCTCGAATTT
ACGAGATAGAGCATTGGTATCAATTCTTTTTCCTTAGACAAAACATTTTT
GTTTATTCGACCGATTAGACACACTTCCGGGTCAAAAGCACGAATAAAAA
GCTTTTCAAAGACCGAAATTGGACCGAGTCTTTGTCAATCTTGATATAAT
CCTTCTTCCCGTGTTTAATCGTTTATTACCCCCTTTTTTAGTTGATGCAG
ACGATCACGGGCGGTGCGTCCGTTCCGCCCAATGTTGTCATAGCAATGGC
TGGTATCGCCAAGGTATTTGTCGGGGAGGTCTCAGAAGAAGGTTAGTTAT
TACATTCTCCATTAGACCATGAATATCCTTTCAGAAGAGATAGACATTAC
AATAAGGTATACAAGGCGAGGTATATTTTCCATTTTTGGGAAGTGGAGAT
TTTCGTTTTTGGTAACAAGTTCCGATAGAGCCGTTACATTTTATCCGATT
TTTAGGCTTCAGAAATTCTAATTTCACTTTTCTTTAAATTTGAATTCTAA
ATTCGCATTATCTAGTCAAACTTGTATACTTTTTGCCACACCAAGTATCA
GATGGCGCAGTATTGTTATTGAACTGATGATTCTGGGAAGCGCTCGCACA
CCCATGGCTGAAAAGTAGGGAACGTTGGTGAAAATGCGCAACCAACTTTC
TAGTACCCTAAAAACCAGAACCCTTTGATTTGTTCGAAAAAAGTCTTATA
TTGATTTTCGTATTTTATTAGCTTTAGACGTAATGGAGAGTTGGGGCGAG
ACTGGACCCATTGAACCGAAACATTTGAGAGAAGCAGCAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00070559-exon-scaffold_56-1575043694:793738..794099 | TCONS_00070559-exon-scaffold_56-1575043694:793738..794099 | Clytia hemisphaerica | exon |
| TCONS_00070559-exon-scaffold_56-1575043694:789806..789893 | TCONS_00070559-exon-scaffold_56-1575043694:789806..789893 | Clytia hemisphaerica | exon |
| TCONS_00070559-exon-scaffold_56-1575043694:789309..789408 | TCONS_00070559-exon-scaffold_56-1575043694:789309..789408 | Clytia hemisphaerica | exon |
| TCONS_00070559-exon-scaffold_56-1575043694:788809..788878 | TCONS_00070559-exon-scaffold_56-1575043694:788809..788878 | Clytia hemisphaerica | exon |
| TCONS_00070559-exon-scaffold_56-1510915933:793738..794099 | TCONS_00070559-exon-scaffold_56-1510915933:793738..794099 | Clytia hemisphaerica | exon |
| TCONS_00070559-exon-scaffold_56-1510915933:789806..789893 | TCONS_00070559-exon-scaffold_56-1510915933:789806..789893 | Clytia hemisphaerica | exon |
| TCONS_00070559-exon-scaffold_56-1510915933:789309..789408 | TCONS_00070559-exon-scaffold_56-1510915933:789309..789408 | Clytia hemisphaerica | exon |
| TCONS_00070559-exon-scaffold_56-1510915933:788809..788878 | TCONS_00070559-exon-scaffold_56-1510915933:788809..788878 | Clytia hemisphaerica | exon |
| TCONS_00070559-exon-scaffold_56-1491911889:793738..794099 | TCONS_00070559-exon-scaffold_56-1491911889:793738..794099 | Clytia hemisphaerica | exon |
| TCONS_00070559-exon-scaffold_56-1491911889:789806..789893 | TCONS_00070559-exon-scaffold_56-1491911889:789806..789893 | Clytia hemisphaerica | exon |
| TCONS_00070559-exon-scaffold_56-1491911889:789309..789408 | TCONS_00070559-exon-scaffold_56-1491911889:789309..789408 | Clytia hemisphaerica | exon |
| TCONS_00070559-exon-scaffold_56-1491911889:788809..788878 | TCONS_00070559-exon-scaffold_56-1491911889:788809..788878 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_56 | supercontig | scaffold_56:788809..794099 - |
Blast
BLAST of TCONS_00070559 vs. Swiss-Prot (Human)
Match: TAF11 (Transcription initiation factor TFIID subunit 11 OS=Homo sapiens GN=TAF11 PE=1 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 5.067e-41 Identity = 67/92 (72.83%), Postives = 81/92 (88.04%), Query Frame = 1
Query: 340 EVERRKLQMLVSAFSEDQLNRYEMYRRASFPKAAIKRLMQTITGGASVPPNVVIAMAGIAKVFVGEVSEEALDVMESWGETGPIEPKHLREA 615
E E +K+Q+LVS+FSE+QLNRYEMYRR++FPKAAIKRL+Q+ITG SV NVVIAM+GI+KVFVGEV EEALDV E WGE P++PKH+REA
Sbjct: 100 EDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITG-TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREA 190
The following BLAST results are available for this feature:
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